Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of KdgR regulog to Escherichia coli O157:H7 str. EC4045

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli O157:H7 str. EC4045
Orthologous TF(s) EschericoliO157_010100022586
Regulated genes 6
Built upon 159 sites [see more]
Predicted regulatory interactions in Escherichia coli O157:H7 str. EC4045
Locus tag Position Score Sequence
Position: -130
Score: 6.3
Sequence: AAATGAAACATTGTTTTATTT
Position: -63
Score: 5.4
Sequence: AAACGAAACAGTGTTTCACTA
Locus tag: EschericoliO157_010100011934
EschericoliO157_010100011934 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655 b2843 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3018 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04220 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638 Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM y1887 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2400 -209 6.1 AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202 ETAE_1898 -129 5.6 AATCAAAACAGCATTTCATTT
Position: -64
Score: 5.4
Sequence: ATAAAAAACGGCGTTTCATAA
Locus tag: EschericoliO157_010100013504
EschericoliO157_010100013504 -64 5.4 ATAAAAAACGGCGTTTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655 b3090 -64 5.4 ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM y3597 -133 5.2 ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0648 -70 6.2 AAATAAAACGGCGTTTCATTT
Position: -86
Score: 5.3
Sequence: TAATGGAACACTGTTTTAATA
Locus tag: EschericoliO157_010100016072
EschericoliO157_010100016072 -86 5.3 TAATGGAACACTGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Escherichia coli str. K-12 substr. MG1655 b3526 -86 5.3 TAATGGAACACTGTTTTAATA
Position: -286
Score: 5
Sequence: TTTTGAAACGCTGTTTTTGTT
Locus tag: EschericoliO157_010100021691
EschericoliO157_010100021691 -286 5 TTTTGAAACGCTGTTTTTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655 b1676 -286 5 TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2 STM1378 -286 4.7 TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01709 -286 5 TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02133 -285 5 ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638 Ent638_1768 -286 5.1 TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568 Spro_2187 -203 4.1 AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1867 -259 5.1 ATACGGAACGTCGTTTCAATT
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