Propagation of Fnr regulog to Escherichia coli UTI89
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Escherichia coli UTI89 |
| Orthologous TF(s) | UTI89_C1605 |
| Regulated genes | 98 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -115
Score: 4.8 Sequence: ATGATTTCAATCAA
Locus tag: UTI89_C0125
|
||||
| UTI89_C0125 | -115 | 4.8 | ATGATTTCAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -116 | 4.7 | CTGATTTCAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0658 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0659 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -115 | 4.8 | ATGATTTCAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2047 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0151 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4012 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0766 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: -131
Score: 4.6 Sequence: ATGTTGTAAATCAA
Locus tag: UTI89_C0127
|
||||
| UTI89_C0127 | -131 | 4.6 | ATGTTGTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceE | ||||
| Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03259 | -133 | 4.6 | ATGTTGTAAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0659 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0660 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3789 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0114 | -131 | 4.6 | ATGTTGTAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00118 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2046 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0152 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4011 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0767 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: -16
Score: 3.3 Sequence: TTGAGGAAGAATAA
Locus tag: UTI89_C0455
|
||||
| UTI89_C0455 | -16 | 3.3 | TTGAGGAAGAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoB | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02730 | -267 | 3.7 | TTGTTGATAATTAA |
| Erwinia amylovora ATCC 49946 | EAM_0984 | -207 | 3.7 | GTTATTTAAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0431 | -241 | 3.7 | TTGTTTTATTTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00393 | -49 | 3.7 | TTGAGGTCGTTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3876 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0107 | 9 | 3.6 | ATGAAATACATAAA |
| Salmonella typhimurium LT2 | STM0442 | -268 | 3.4 | TTTATTGATAATAA |
| Serratia proteamaculans 568 | Spro_1089 | -293 | 3.6 | TTCTTTTACATTAA |
| Yersinia pestis KIM | y1020 | -223 | 3.5 | TTGTTTTTCCTTAA |
|
Position: -201
Score: 3.6 Sequence: TTGAGCTTGAACAT
Locus tag: UTI89_C0615
|
||||
| UTI89_C0615 | -201 | 3.6 | TTGAGCTTGAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citG | ||||
| Ortholog function: 2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02546 | -184 | 4.1 | GTGAAATAAATCAA |
| Enterobacter sp. 638 | Ent638_3370 | 19 | 4.1 | TTTATAAAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2569 | -93 | 3.8 | TTGAGCCAAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b0613 | -179 | 4.1 | GTGAAATAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00038 | -125 | 3.6 | TTAATTAACAACAT |
| Salmonella typhimurium LT2 | STM0063 | -227 | 4.2 | TTGATGGGTAACAA |
| Salmonella typhimurium LT2 | STM0619 | -182 | 4.1 | GTGAAATAAATCAA |
|
Position: -92
Score: 4.1 Sequence: GTGAAATAAATCAA
Locus tag: UTI89_C0622
|
||||
| UTI89_C0622 | -92 | 4.1 | GTGAAATAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citC | ||||
| Ortholog function: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0618 | -179 | 4.1 | GTGAAATAAATCAA |
|
Position: -153
Score: 4.1 Sequence: TTGATTTATTTCAC
Locus tag: UTI89_C0623
|
||||
| UTI89_C0623 | -153 | 4.1 | TTGATTTATTTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citA | ||||
| Ortholog function: Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02540 | -216 | 4.1 | TTGATTTATTTCAC |
| Escherichia coli str. K-12 substr. MG1655 | b0619 | -213 | 4.1 | TTGATTTATTTCAC |
|
Position: -103
Score: 4.7 Sequence: TTGATTTTAATCAG
Locus tag: UTI89_C0625
|
||||
| UTI89_C0625 | -103 | 4.7 | TTGATTTTAATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuC | ||||
| Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02537 | -106 | 4.7 | TTGATTTTAATCAG |
| Edwardsiella tarda EIB202 | ETAE_1192 | -147 | 4.1 | TTGACCAATATCAG |
| Enterobacter sp. 638 | Ent638_1152 | -102 | 4.4 | TTGATTTTAGTCAT |
| Escherichia coli str. K-12 substr. MG1655 | b0621 | -103 | 4.7 | TTGATTTTAATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00654 | -104 | 4.5 | TTGATTTGCATCAG |
| Proteus mirabilis HI4320 | PMI0652 | -127 | 4.5 | TTGATATATGTCAT |
| Salmonella typhimurium LT2 | STM0627 | -138 | 3.6 | TTCATCTTTAGCAA |
| -101 | 4.1 | GTGATTTTAATCAG | ||
| Serratia proteamaculans 568 | Spro_1579 | -107 | 4 | TTGACGGATATCAT |
|
Position: -173
Score: 3.6 Sequence: TTATTCGTCATCAA
Locus tag: UTI89_C0715
|
||||
| UTI89_C0715 | -173 | 3.6 | TTATTCGTCATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltA | ||||
| Ortholog function: Citrate synthase (EC 2.3.3.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02439 | -67 | 3.8 | TTGATTTATGTAAC |
| Enterobacter sp. 638 | Ent638_1221 | -147 | 3.6 | TCGCGCTAGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1167 | -171 | 3.7 | ATGATACTCATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4121 | -185 | 4.8 | TTTATCTAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0720 | -173 | 3.6 | TTATTCGTCATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00489 | 28 | 3.6 | TTGCCGGACAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1425 | -110 | 3.6 | TTGATGACAAAGAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3138 | -56 | 3.8 | CCTATTTAAATCAA |
| Salmonella typhimurium LT2 | STM0730 | -213 | 3.9 | TCGAAATTAATCAA |
|
Position: 25
Score: 3.6 Sequence: ATGTGAAAAAACAA
Locus tag: UTI89_C0717
|
||||
| UTI89_C0717 | 25 | 3.6 | ATGTGAAAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02438 | 25 | 3.6 | ATGTGAAAAAACAA |
| Edwardsiella tarda EIB202 | ETAE_2588 | 10 | 4 | |
| Escherichia coli str. K-12 substr. MG1655 | b0721 | 10 | 3.6 | ATGTGAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00728 | -104 | 3.6 | ATGTGAAAAAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1426 | -127 | 4 | TTGTGAAAAAACAA |
| Proteus mirabilis HI4320 | PMI0565 | -2 | 4 | TTGTGAAAAAACAA |
| Salmonella typhimurium LT2 | STM0732 | 10 | 3.6 | ATGTGAAAAAACAA |
| Serratia proteamaculans 568 | Spro_1263 | -249 | 4.1 | GTGATCTAAATCAC |
| Yersinia pestis KIM | y3071 | -224 | 3.8 | ATGTTATCAATCAG |
|
Position: -348
Score: 5.4 Sequence: TTGATATAAATCAA
Locus tag: UTI89_C0727
|
||||
| UTI89_C0727 | -348 | 5.4 | TTGATATAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0733 | -348 | 5.1 | TTGATATTTATCAA |
| -296 | 4.6 | TTGTTCTCGATCAA | ||
|
Position: -87
Score: 4.8 Sequence: TTGATATACATCAT
Locus tag: UTI89_C0778
|
||||
| UTI89_C0778 | -87 | 4.8 | TTGATATACATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhK | ||||
| Ortholog function: Predicted transferase, NAD(P)-binding | ||||
| Edwardsiella tarda EIB202 | ETAE_2348 | -92 | 3.9 | TTGATACATGTCAC |
| Enterobacter sp. 638 | Ent638_1272 | -90 | 4.5 | TTGATATACGTCAT |
| Erwinia amylovora ATCC 49946 | EAM_1217 | -88 | 4 | TTGATATATAGCGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2818 | -117 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0780 | -147 | 4.8 | TTGATATACATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00809 | -91 | 4 | TTGATGTCGGTCAG |
| Salmonella typhimurium LT2 | STM0801 | -146 | 4.8 | TTGATATATATCAT |
| Yersinia pestis KIM | y3024 | -190 | 4.2 | TTGTTTAAAATCAC |
|
Position: -182
Score: 4.8 Sequence: ATGATGTATATCAA
Locus tag: UTI89_C0780
|
||||
| UTI89_C0780 | -182 | 4.8 | ATGATGTATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02345 | -253 | 4.7 | CTGATGTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2347 | -380 | 3.9 | GTGACATGTATCAA |
| Enterobacter sp. 638 | Ent638_1273 | -236 | 4.4 | ATGACGTATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1218 | -212 | 4.2 | TCGCTATATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2817 | -321 | 3.5 | ATGACCTGAGACAA |
| Escherichia coli str. K-12 substr. MG1655 | b0781 | -263 | 4.9 | ATGATGTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00810 | -257 | 4 | CTGACCGACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1499 | -155 | 3.7 | TCGTTTTACATTAA |
| Salmonella typhimurium LT2 | STM0802 | -264 | 5 | ATGATATATATCAA |
| Serratia proteamaculans 568 | Spro_1320 | -312 | 3.7 | GTGATTCCGGTCAA |
| Yersinia pestis KIM | y3023 | -310 | 4.3 | GTGATTTTAAACAA |
|
Position: 9
Score: 3.9 Sequence: CTGACCCATATCAA
Locus tag: UTI89_C0783
|
||||
| UTI89_C0783 | 9 | 3.9 | CTGACCCATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaC | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaC | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02343 | -253 | 4.7 | CTGATGTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2346 | -380 | 3.9 | GTGACATGTATCAA |
| Enterobacter sp. 638 | Ent638_1275 | -236 | 4.4 | ATGACGTATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1220 | -212 | 4.2 | TCGCTATATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2815 | -321 | 3.5 | ATGACCTGAGACAA |
| Escherichia coli str. K-12 substr. MG1655 | b0783 | -263 | 4.9 | ATGATGTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00812 | -257 | 4 | CTGACCGACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1500 | -155 | 3.7 | TCGTTTTACATTAA |
| Salmonella typhimurium LT2 | STM0804 | -264 | 5 | ATGATATATATCAA |
| Serratia proteamaculans 568 | Spro_1322 | -312 | 3.7 | GTGATTCCGGTCAA |
| Yersinia pestis KIM | y3021 | -222 | 3.7 | GTGATGATCAACAA |
|
Position: -40
Score: 4.4 Sequence: TTGACGCACATCAA
Locus tag: UTI89_C0827
|
||||
| UTI89_C0827 | -40 | 4.4 | TTGACGCACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybiY | ||||
| Ortholog function: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02286 | -70 | 4.1 | TTGACCTGCGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0451 | -71 | 5.2 | TTGATCAAAATCAA |
| Enterobacter sp. 638 | Ent638_1318 | -68 | 4.4 | TTGACGCACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0824 | -67 | 4.4 | TTGACGCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00858 | -69 | 4.7 | TTGATTTGCGTCAA |
| Salmonella typhimurium LT2 | STM0844 | -69 | 4.4 | TTGACGCACATCAA |
| Serratia proteamaculans 568 | Spro_2641 | -76 | 5.1 | TTGATCGAAATCAA |
|
Position: 18
Score: 3.7 Sequence: TTGATGTCGCTCGA
Locus tag: UTI89_C0830
|
||||
| UTI89_C0830 | 18 | 3.7 | TTGATGTCGCTCGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moeA | ||||
| Ortholog function: Molybdopterin biosynthesis protein MoeA | ||||
| Edwardsiella tarda EIB202 | ETAE_1153 | -335 | 3.8 | ATGATACAGATCAC |
| Enterobacter sp. 638 | Ent638_1321 | -155 | 3.3 | TCTATAAATATCAT |
| Erwinia amylovora ATCC 49946 | EAM_1284 | -244 | 3.5 | CTGTGATAAATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2836 | -383 | 3.7 | ATGATGTAAAGCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0827 | 18 | 3.7 | TTGATGTCGCTCGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1540 | -244 | 3.9 | TTGACAGTGGTCAA |
| Proteus mirabilis HI4320 | PMI0637 | -182 | 3.7 | TTAAAATACAACAA |
| Yersinia pestis KIM | y2673 | -202 | 3.8 | TTGATATATATATA |
|
Position: -104
Score: 4.4 Sequence: TTGCGCTAAATCAA
Locus tag: UTI89_C0876
|
||||
| UTI89_C0876 | -104 | 4.4 | TTGCGCTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0873 | -110 | 4.4 | TTGCGCTAAATCAA |
|
Position: -184
Score: 4.2 Sequence: TTGATACCGAACAA
Locus tag: UTI89_C0967
|
||||
| UTI89_C0967 | -184 | 4.2 | TTGATACCGAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsA | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02177 | -117 | 3.6 | CTGATTTTTCTCAT |
| Enterobacter sp. 638 | Ent638_1418 | -3 | 3.8 | TCTATGAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0894 | -184 | 4.3 | TTGATACCGAACAA |
| Salmonella typhimurium LT2 | STM0964 | -96 | 4.2 | |
| Yersinia pestis KIM | y0864 | -199 | 4.2 | TTGATTCCAGACAA |
|
Position: -46
Score: 4.6 Sequence: TTGATCTAACACAA
Locus tag: UTI89_C0970
|
||||
| UTI89_C0970 | -46 | 4.6 | TTGATCTAACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycaC | ||||
| Ortholog function: Nicotinamidase family protein YcaC | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02173 | -145 | 4.7 | TTGACCTAAAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b0897 | -146 | 3.9 | TTGAACTAACACAA |
| 22 | 3.8 | TTGATAAAAATGAT | ||
|
Position: -123
Score: 5.2 Sequence: TTGATTAACATCAA
Locus tag: UTI89_C1237
|
||||
| UTI89_C1237 | -123 | 5.2 | TTGATTAACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01946 | -163 | 5.2 | TTGATGTACATCAA |
| Edwardsiella tarda EIB202 | ETAE_2070 | -162 | 5.1 | TTGATTTGAATCAA |
| Enterobacter sp. 638 | Ent638_1624 | -149 | 5.1 | TTGATTCATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -146 | 4.2 | TTGACCAGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -149 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -150 | 5.2 | TTGATTAACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -148 | 4.8 | TTGATGCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -150 | 4.2 | TTGATGTTGTTCAA |
| Proteus mirabilis HI4320 | PMI0875 | -153 | 5.5 | TTGATATAAATCAA |
| Salmonella typhimurium LT2 | STM1211 | -150 | 4.8 | TTGATGCACATCAA |
| Serratia proteamaculans 568 | Spro_1926 | -149 | 5.2 | TTGATGTACATCAA |
| Yersinia pestis KIM | y1777 | -148 | 5.4 | TTGATATATATCAA |
|
Position: -89
Score: 3.6 Sequence: TTGCTCTAAAGCAT
Locus tag: UTI89_C1266
|
||||
| UTI89_C1266 | -89 | 3.6 | TTGCTCTAAAGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icdA | ||||
| Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42) | ||||
| Edwardsiella tarda EIB202 | ETAE_2050 | -73 | 3.9 | TTTTATTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2439 | -158 | 3.7 | GTGATTTTTAACAG |
| Escherichia coli str. K-12 substr. MG1655 | b1136 | -89 | 3.6 | TTGCTCTAAAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2801 | -249 | 4.8 | TTGTTAAATATCAA |
| Serratia proteamaculans 568 | Spro_2025 | -3 | 4.3 | TTGATGGAAAGCAA |
| Yersinia pestis KIM | y1802 | -106 | 3.7 | GTGATTTTTAACAG |
|
Position: -67
Score: 5.4 Sequence: TTGATTTACATCAA
Locus tag: UTI89_C1420
|
||||
| UTI89_C1420 | -67 | 5.4 | TTGATTTACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01299 | -229 | 5.5 | TTGATTTATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1223 | -111 | 4.7 | ATGATAAATATCAA |
| -73 | 5.4 | TTGATTTACATCAA | ||
| Salmonella typhimurium LT2 | STM1765 | -73 | 5.5 | TTGATTTATATCAA |
|
Position: -105
Score: 4.7 Sequence: TTGATCGTTATCAA
Locus tag: UTI89_C1421
|
||||
| UTI89_C1421 | -105 | 4.7 | TTGATCGTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narG | ||||
| Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01301 | -105 | 4.7 | TTGATCGTTATCAA |
| Enterobacter sp. 638 | Ent638_2315 | -100 | 4.7 | TTGATCGTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1224 | -105 | 4.7 | TTGATCGTTATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02214 | -106 | 4.6 | TTGATCGCTATCAA |
| Salmonella typhimurium LT2 | STM1764 | -105 | 4.7 | TTGATCGTTATCAA |
|
Position: -237
Score: 4.3 Sequence: TTGATTTGGATCAC
Position: -100
Score: 3.9 Sequence: TTGATTTCCATCGG
Locus tag: UTI89_C1438
|
||||
| UTI89_C1438 | -237 | 4.3 | TTGATTTGGATCAC | |
| -100 | 3.9 | TTGATTTCCATCGG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -238 | 4.1 | TTGATCTGGATCAC |
| Enterobacter sp. 638 | Ent638_2304 | -249 | 4.5 | TTGATTCAGATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -311 | 3.6 | TCGATGTTGATCAC |
| -305 | 3.8 | TTGATCACAAAAAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -237 | 4.3 | TTGATTTGGATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -233 | 4.7 | TTGATCTAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -134 | 4.5 | GTGATTAAGATCAA |
| Proteus mirabilis HI4320 | PMI1486 | -242 | 3.8 | GTGATGTAGATCAC |
| Salmonella typhimurium LT2 | STM1749 | -238 | 4.7 | TTGATTTAGATCAC |
| Serratia proteamaculans 568 | Spro_2704 | -274 | 4.4 | ATGATTTAAATCAC |
|
Position: -84
Score: 4.8 Sequence: TTGATTTAAATCAC
Position: -39
Score: 4.1 Sequence: TTAATCCAGATCAA
Locus tag: UTI89_C1456
|
||||
| UTI89_C1456 | -84 | 4.8 | TTGATTTAAATCAC | |
| -39 | 4.1 | TTAATCCAGATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -117 | 4.1 | TTAATCTGGATCAA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -157 | 4.9 | TTGATGTCTATCAA |
| Enterobacter sp. 638 | Ent638_2283 | -117 | 4.1 | TTAATCTGGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1884 | -160 | 5.4 | TTGATCTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -160 | 4.8 | TTGATCTGGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -162 | 4.8 | TTGATTTAAATCAC |
| -117 | 4.1 | TTAATCCAGATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -247 | 4.2 | TTGATTTCACTCAT |
| -80 | 4.1 | TTAATCTGGATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -160 | 5 | TTGATTTGGATCAA |
| Proteus mirabilis HI4320 | PMI1350 | -164 | 4.8 | TTGATGTGGATCAA |
| Salmonella typhimurium LT2 | STM1732 | -117 | 4.1 | TTAATCTGGATCAA |
| Serratia proteamaculans 568 | Spro_2674 | -131 | 5 | TTGATTCAGATCAA |
| Yersinia pestis KIM | y2044 | -171 | 3.6 | ATGATAAATGGCAA |
| -147 | 4.4 | ATGATCCAGATCAA | ||
|
Position: -290
Score: 4.4 Sequence: TTGAGTTATCTCAA
Position: -133
Score: 4 Sequence: TTGCTTTGCCTCAA
Locus tag: UTI89_C1547
|
||||
| UTI89_C1547 | -290 | 4.4 | TTGAGTTATCTCAA | |
| -133 | 4 | TTGCTTTGCCTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnA | ||||
| Ortholog function: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99) | ||||
| Enterobacter sp. 638 | Ent638_2192 | -135 | 4.6 | TTGTTTTATCTCAA |
| Erwinia amylovora ATCC 49946 | EAM_1866 | 37 | 4.4 | TGGATGTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1941 | -98 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1276 | -133 | 3.7 | TTGCTTTGCCACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2432 | 7 | 4.6 | TTGATTTAAAAAAA |
| Salmonella typhimurium LT2 | STM1712 | -301 | 3.9 | TTGATTAAACACAG |
| Yersinia pestis KIM | y2063 | -37 | 3.9 | TTGAATTAAAACAC |
|
Position: -33
Score: 4.7 Sequence: TTGACAAATATCAA
Locus tag: UTI89_C1605
|
||||
| UTI89_C1605 | -33 | 4.7 | TTGACAAATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -59
Score: 4.3 Sequence: TTGATGTTAATTAA
Locus tag: UTI89_C1637
|
||||
| UTI89_C1637 | -59 | 4.3 | TTGATGTTAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aldA | ||||
| Ortholog function: Aldehyde dehydrogenase A (EC 1.2.1.22) / Glycolaldehyde dehydrogenase (EC 1.2.1.21) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01448 | -3 | 4.1 | CCGATGTATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1415 | -59 | 4.3 | TTGATGTTAATTAA |
|
Position: -133
Score: 4.4 Sequence: TTGAGGTAGGTCAA
Position: -78
Score: 3.8 Sequence: TTGATTTCGCGCAA
Locus tag: UTI89_C1689
|
||||
| UTI89_C1689 | -133 | 4.4 | TTGAGGTAGGTCAA | |
| -78 | 3.8 | TTGATTTCGCGCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdnG | ||||
| Ortholog function: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing | ||||
| Enterobacter sp. 638 | Ent638_2055 | -77 | 3.9 | TTGATTTGACGCAA |
| Enterobacter sp. 638 | Ent638_2054 | -77 | 3.9 | TTGATTTGACGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1474 | -133 | 4.4 | TTGAGGTAGGTCAA |
| Salmonella typhimurium LT2 | STM1570 | -126 | 3.9 | TTGATTTGACGCAA |
|
Position: -113
Score: 4.1 Sequence: TTGATATGGATTAA
Locus tag: UTI89_C1774
|
||||
| UTI89_C1774 | -113 | 4.1 | TTGATATGGATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ynfE | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01581 | -114 | 3.7 | TTGACATGGATTAA |
| Escherichia coli str. K-12 substr. MG1655 | b1587 | -113 | 4.1 | TTGATATGGATTAA |
| Salmonella typhimurium LT2 | STM1499 | -116 | 3.7 | TTGACATGGATTAA |
| Serratia proteamaculans 568 | Spro_1687 | -164 | 4.2 | TTGATAGCAGACAA |
| -40 | 4.2 | ATGACGTTTATCAA | ||
|
Position: 0
Score: 3.7 Sequence: ATGATGAAAATCCA
Locus tag: UTI89_C1775
|
||||
| UTI89_C1775 | 0 | 3.7 | ATGATGAAAATCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ynfE | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01582 | -32 | 4.3 | |
| Escherichia coli str. K-12 substr. MG1655 | b1588 | -113 | 4.1 | TTGATATGGATTAA |
| Salmonella typhimurium LT2 | STM1498 | -116 | 3.7 | TTGACATGGATTAA |
|
Position: -215
Score: 4.7 Sequence: TTGATAACGATCAA
Locus tag: UTI89_C1866
|
||||
| UTI89_C1866 | -215 | 4.7 | TTGATAACGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydhY | ||||
| Ortholog function: Predicted oxidoreductase, Fe-S subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01699 | -162 | 4.7 | TTGATAACGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1674 | -214 | 4.7 | TTGATAACGATCAA |
| -60 | 3.7 | ATGCTTAATATCAG | ||
| Proteus mirabilis HI4320 | PMI0070 | -92 | 3.7 | TTTATATACAACGA |
|
Position: -201
Score: 3.7 Sequence: ATCACAAAAATCAA
Position: -180
Score: 4 Sequence: GTGATGTAAATCAC
Locus tag: UTI89_C2105
|
||||
| UTI89_C2105 | -201 | 3.7 | ATCACAAAAATCAA | |
| -180 | 4 | GTGATGTAAATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yecR | ||||
| Ortholog function: putative outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1904 | -179 | 3.7 | GTGATACAAATCAC |
|
Position: -61
Score: 3.8 Sequence: TTGAATCTTAACAA
Locus tag: UTI89_C2437
|
||||
| UTI89_C2437 | -61 | 3.8 | TTGAATCTTAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeiL | ||||
| Ortholog function: Predicted N-ribosylNicotinamide CRP-like regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2163 | -100 | 3.8 | TTGAATCTTAACAA |
|
Position: -46
Score: 3.2 Sequence: TTGGTCGCTCTCAA
Locus tag: UTI89_C2486
|
||||
| UTI89_C2486 | -46 | 3.2 | TTGGTCGCTCTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napF | ||||
| Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2208 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2261 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: -71
Score: 3.6 Sequence: ATGCGCGAAATCAA
Locus tag: UTI89_C2521
|
||||
| UTI89_C2521 | -71 | 3.6 | ATGCGCGAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -30 | 3.8 | ATGATAAAAAACGA |
| Edwardsiella tarda EIB202 | ETAE_3115 | -78 | 4.1 | TTGCTCCTTATCAA |
| Enterobacter sp. 638 | Ent638_2805 | -69 | 4.3 | ATGTTCGAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -84 | 4.5 | TTGCTCTTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -71 | 3.6 | ATGCGCGAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -71 | 4.1 | ATGCTCGAAATCAA |
| Proteus mirabilis HI4320 | PMI3592 | -107 | 4.2 | TTGCTCATTATCAA |
| Salmonella typhimurium LT2 | STM2284 | -30 | 3.8 | ATGATAAAAAACGA |
| Serratia proteamaculans 568 | Spro_0200 | -74 | 4.3 | TTGTTCCTTATCAA |
| Yersinia pestis KIM | y0404 | -145 | 4.3 | TTGATCACAATCAT |
| -91 | 4.4 | TTGTTTCTTATCAA | ||
|
Position: -92
Score: 4.1 Sequence: ATGATGTTAATCAT
Locus tag: UTI89_C2579
|
||||
| UTI89_C2579 | -92 | 4.1 | ATGATGTTAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00498 | -92 | 4.1 | ATGATGTTAATCAT |
| Edwardsiella tarda EIB202 | ETAE_2397 | -93 | 4.1 | ATGATGTTAATCAT |
| Enterobacter sp. 638 | Ent638_2840 | -92 | 4.1 | ATGATGTTAATCAT |
| Erwinia amylovora ATCC 49946 | EAM_2301 | -119 | 3.9 | TTGCTTTCGGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -91 | 4.1 | ATGATGTTAATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2296 | -92 | 4.1 | ATGATGTTAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -91 | 4.1 | ATGATGTTAATCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -117 | 4.1 | ATGATGTTAATCAT |
| Proteus mirabilis HI4320 | PMI1771 | -165 | 3.7 | TTGATGATTGGCAA |
| Salmonella typhimurium LT2 | STM2337 | -92 | 4.1 | ATGATGTTAATCAT |
| Serratia proteamaculans 568 | Spro_3316 | -121 | 4.1 | ATGATGTTAATCAT |
| Yersinia pestis KIM | y1622 | -163 | 4.1 | ATGATGTTAATCAT |
|
Position: -67
Score: 4.5 Sequence: TTGACTAAAGTCAA
Locus tag: UTI89_C2814
|
||||
| UTI89_C2814 | -67 | 4.5 | TTGACTAAAGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: upp | ||||
| Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00293 | -103 | 4.6 | TTGATCCATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_1087 | -97 | 4.5 | TTGATTGAGATCAT |
| Enterobacter sp. 638 | Ent638_2986 | -97 | 4.4 | TTGATCACCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1255 | -169 | 4.3 | TTGATCTGGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2498 | -95 | 4.6 | TTGACTAAAGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02821 | -96 | 5 | TTGATATACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2759 | -103 | 5.1 | TTGATGAAAATCAA |
| Proteus mirabilis HI4320 | PMI1574 | -97 | 5.1 | TTGATCAATATCAA |
| Salmonella typhimurium LT2 | STM2498 | -103 | 4.6 | TTGATCCAGGTCAA |
| Yersinia pestis KIM | y1408 | -98 | 4.4 | TTGATCTGAATCAG |
|
Position: -243
Score: 4.5 Sequence: TTGACTTTAGTCAA
Locus tag: UTI89_C2815
|
||||
| UTI89_C2815 | -243 | 4.5 | TTGACTTTAGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_1086 | -186 | 4.7 | ATGATCTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -198 | 4.3 | CTGATCCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -243 | 4.6 | TTGACTTTAGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -137 | 5.2 | TTGATTTTCATCAA |
| Proteus mirabilis HI4320 | PMI1575 | -148 | 5 | TTGATATTGATCAA |
| Salmonella typhimurium LT2 | STM2499.S | -309 | 4.4 | TTGACCTGGATCAA |
| Yersinia pestis KIM | y1407 | -312 | 4.5 | CTGATTCAGATCAA |
| -274 | 3.7 | ATGCTAAAAATCAG | ||
|
Position: -141
Score: 5.3 Sequence: TTGATATATATCAA
Locus tag: UTI89_C2819
|
||||
| UTI89_C2819 | -141 | 5.3 | TTGATATATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfgF | ||||
| Ortholog function: Predicted cytochrome C-type biogenesis protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00285 | -142 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2503 | -141 | 5.4 | TTGATATATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02828 | -144 | 5.5 | TTGATTTATATCAA |
| Salmonella typhimurium LT2 | STM2503 | -143 | 5.1 | TTGACTTAAATCAA |
|
Position: -41
Score: 4.8 Sequence: TTGAGATACATCAA
Locus tag: UTI89_C2871
|
||||
| UTI89_C2871 | -41 | 4.8 | TTGAGATACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmp | ||||
| Ortholog function: Nitric oxide dioxygenase (EC 1.14.12.17) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00235 | -40 | 4.4 | TTGACATACATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2552 | -40 | 4.8 | TTGAGATACATCAA |
| Salmonella typhimurium LT2 | STM2556 | -40 | 4.8 | TTGATATACATCAT |
|
Position: -121
Score: 5.5 Sequence: TTGATTTAAATCAA
Locus tag: UTI89_C2901
|
||||
| UTI89_C2901 | -121 | 5.5 | TTGATTTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiD | ||||
| Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2579 | -174 | 5.1 | TTGATGTAAAACAA |
| -121 | 5.6 | TTGATTTAAATCAA | ||
|
Position: -197
Score: 5.5 Sequence: TTGATTTAAATCAA
Position: -144
Score: 5.1 Sequence: TTGTTTTACATCAA
Locus tag: UTI89_C2902
|
||||
| UTI89_C2902 | -197 | 5.5 | TTGATTTAAATCAA | |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ung | ||||
| Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00204 | -209 | 5.6 | TTGATTTAAATCAA |
| -156 | 5.1 | TTGTTTTACATCAA | ||
| Edwardsiella tarda EIB202 | ETAE_2734 | -396 | 4.1 | TTGAGATAGAGCAA |
| -280 | 5.4 | TTGATCTAAATCAA | ||
| -227 | 4.7 | ATGTTTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_3065 | -194 | 5 | TTGACCTAAATCAA |
| -142 | 5.1 | TTGTTTTATATCAA | ||
| 34 | 4.2 | CTGATGAAAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2526 | -177 | 4.9 | TTGATGCAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3289 | -228 | 5.1 | TTGACTTAAATCAA |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b2580 | -197 | 5.6 | TTGATTTAAATCAA |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02903 | -206 | 5.5 | TTGATATAAATCAA |
| -153 | 5.1 | TTGTTTTACATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3371 | -233 | 4.1 | TTGATTCAGAACAG |
| Proteus mirabilis HI4320 | PMI1899 | -221 | 5.1 | TTGATAAATATCAA |
| -168 | 5.2 | TTGTTTTAAATCAA | ||
| Salmonella typhimurium LT2 | STM2647 | -208 | 5.6 | TTGATTTAAATCAA |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Serratia proteamaculans 568 | Spro_3683 | -222 | 5 | TTGATTAAAGTCAA |
| -169 | 4.4 | ATGTTTTATGTCAA | ||
| Yersinia pestis KIM | y1281 | -213 | 5.2 | TTGATTCAAATCAA |
| -160 | 4.7 | ATGTTTTATATCAA | ||
|
Position: 3
Score: 4 Sequence: TTTACCTTTATCAA
Locus tag: UTI89_C3083
|
||||
| UTI89_C3083 | 3 | 4 | TTTACCTTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyfH | ||||
| Ortholog function: Hydrogenase-4 component H (EC 1.-.-.-) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1240 | -91 | 3.5 | TTGAATTAAAGAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2488 | -29 | 3.8 | ATGTTTCATATCAT |
| Proteus mirabilis HI4320 | PMI2521 | -114 | 4.9 | TTGATTTTTAACAA |
|
Position: -71
Score: 4.5 Sequence: TTGTTTAACGTCAA
Locus tag: UTI89_C3346
|
||||
| UTI89_C3346 | -71 | 4.5 | TTGTTTAACGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ansB | ||||
| Ortholog function: L-asparaginase (EC 3.5.1.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_2179 | 0 | 3.7 | ATGAAGTTAGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2957 | -71 | 4.5 | TTGTTTAACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1616 | -55 | 3.7 | TTTATTGTTATCAT |
| Proteus mirabilis HI4320 | PMI0708 | -139 | 4.2 | TTGATTTTAAATAA |
| Yersinia pestis KIM | y2787 | 0 | 3.6 | ATGAAATATATAAA |
|
Position: -221
Score: 4 Sequence: TTTATATATTTCAA
Locus tag: UTI89_C3409
|
||||
| UTI89_C3409 | -221 | 4 | TTTATATATTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pitA | ||||
| Ortholog function: Phosphate transporter, low-affinity | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0048 | -140 | 4 | TTGATTTATATTGA |
| Escherichia coli str. K-12 substr. MG1655 | b3493 | -116 | 3.8 | TTGAGTGAAATCCA |
| Salmonella typhimurium LT2 | STM3589 | -116 | 4.2 | GTGATATCAAACAA |
| Yersinia pestis KIM | y3862 | -201 | 4.1 | TTGAATAAAATCAT |
|
Position: -144
Score: 3.8 Sequence: GTATTTTAAATCAA
Position: -100
Score: 4.1 Sequence: GCGATCTAAATCAA
Locus tag: UTI89_C3510
|
||||
| UTI89_C3510 | -144 | 3.8 | GTATTTTAAATCAA | |
| -100 | 4.1 | GCGATCTAAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aer | ||||
| Ortholog function: Aerotaxis sensor receptor | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04485 | -101 | 4.2 | GCGATCTAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3072 | -100 | 4.2 | GCGATCTAAATCAA |
| Proteus mirabilis HI4320 | PMI2813 | -37 | 3.8 | TTGAGATATCTCAT |
|
Position: 0
Score: 3.7 Sequence: ATGCAATACATCAA
Locus tag: UTI89_C3529
|
||||
| UTI89_C3529 | 0 | 3.7 | ATGCAATACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaA | ||||
| Ortholog function: Altronate hydrolase (EC 4.2.1.7) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04493 | -43 | 3.8 | TTGATCCAACTCAC |
| Enterobacter sp. 638 | Ent638_3545 | -105 | 4.2 | TTGATCTAACTCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0647 | -225 | 3.9 | TTGAGTGATATCAC |
| Escherichia coli str. K-12 substr. MG1655 | b3091 | -106 | 4.2 | TTGATCTAACTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03519 | -125 | 4.2 | TTGATCTAACTCAC |
| Serratia proteamaculans 568 | Spro_4320 | -227 | 3.9 | TTGAGTGATATCAC |
| Yersinia pestis KIM | y3598 | -225 | 3.8 | TTGAGTGACATCAC |
|
Position: -43
Score: 4.2 Sequence: TTGATCTAACTCAC
Locus tag: UTI89_C3530
|
||||
| UTI89_C3530 | -43 | 4.2 | TTGATCTAACTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaC | ||||
| Ortholog function: Uronate isomerase (EC 5.3.1.12) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04494 | -43 | 3.8 | TTGATCCAACTCAC |
| Enterobacter sp. 638 | Ent638_3546 | -105 | 4.2 | TTGATCTAACTCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0645 | -225 | 3.9 | TTGAGTGATATCAC |
| Escherichia coli str. K-12 substr. MG1655 | b3092 | -106 | 4.2 | TTGATCTAACTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03520 | -125 | 4.2 | TTGATCTAACTCAC |
|
Position: -94
Score: 3.8 Sequence: TTGTTTTAATTTAA
Locus tag: UTI89_C3552
|
||||
| UTI89_C3552 | -94 | 3.8 | TTGTTTTAATTTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tdcB | ||||
| Ortholog function: Threonine dehydratase, catabolic (EC 4.3.1.19) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04517 | -183 | 4.2 | TTGACAAAAATCAT |
| Edwardsiella tarda EIB202 | ETAE_0894 | -131 | 3.8 | TTGCTCTTTATAAA |
| Enterobacter sp. 638 | Ent638_3564 | -184 | 4.5 | TTGATCAATATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b3117 | -183 | 4.2 | TTGACAAAAATCAG |
| Salmonella typhimurium LT2 | STM3244 | -184 | 4.7 | TTGATTGAAATCAG |
|
Position: -184
Score: 4.2 Sequence: TTGACAAAAATCAG
Locus tag: UTI89_C3553
|
||||
| UTI89_C3553 | -184 | 4.2 | TTGACAAAAATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tdcA | ||||
| Ortholog function: Threonine catabolism transcriptional regulator TdcA, LysR family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04518 | -183 | 4.2 | TTGACAAAAATCAT |
| Edwardsiella tarda EIB202 | ETAE_0893 | -131 | 3.8 | TTGCTCTTTATAAA |
| Enterobacter sp. 638 | Ent638_3565 | -184 | 4.5 | TTGATCAATATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b3118 | -183 | 4.2 | TTGACAAAAATCAG |
| Salmonella typhimurium LT2 | STM3245 | -184 | 4.7 | TTGATTGAAATCAG |
|
Position: -138
Score: 4 Sequence: TTGATCCAGGTCAT
Locus tag: UTI89_C3647
|
||||
| UTI89_C3647 | -138 | 4 | TTGATCCAGGTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcC | ||||
| Ortholog function: COG1242: Predicted Fe-S oxidoreductase | ||||
| Enterobacter sp. 638 | Ent638_3655 | -65 | 3.7 | TTTATTCAAATGAA |
| -32 | 4 | TTGATCCAGGTCAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0313 | -70 | 3.7 | TTGATCGCGGTCAT |
| Escherichia coli str. K-12 substr. MG1655 | b3211 | -75 | 4 | TTGATCCAGGTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03623 | -75 | 4 | TTGATCCAGGTCAT |
| Salmonella typhimurium LT2 | STM3329 | -75 | 4 | TTGATCCAGGTCAT |
| Serratia proteamaculans 568 | Spro_4343 | -74 | 4.2 | TTGATCTCTGTCAT |
| Yersinia pestis KIM | y0127 | -133 | 4.2 | TTGATCTCTGTCAT |
|
Position: -156
Score: 3.9 Sequence: TTGACCTGTATCAG
Locus tag: UTI89_C3649
|
||||
| UTI89_C3649 | -156 | 3.9 | TTGACCTGTATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3212 | -156 | 3.9 | TTGACCTGTATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03624 | -114 | 3.9 | ATGTTGTACGACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4009 | -362 | 4.1 | GTGATATAAATCAC |
| -334 | 4.1 | CTGATCTATATCAC | ||
| Proteus mirabilis HI4320 | PMI3677 | -353 | 3.7 | TTATCTAACATCAA |
| -252 | 4.1 | TTTTTATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_4344 | -330 | 3.6 | ATATTAAATATCAA |
| Yersinia pestis KIM | y0128 | -72 | 3.8 | CTGTCTGATATCAA |
|
Position: -72
Score: 5.4 Sequence: TTGATTTACATCAA
Locus tag: UTI89_C3869
|
||||
| UTI89_C3869 | -72 | 5.4 | TTGATTTACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirB | ||||
| Ortholog function: Nitrite reductase, large subunit (EC 1.7.1.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04789 | -72 | 5.4 | TTGATTTACATCAA |
| Enterobacter sp. 638 | Ent638_3793 | -72 | 5 | TTGATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4079 | -71 | 5.3 | TTGATATACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3365 | -72 | 5.4 | TTGATTTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03752 | -72 | 5 | TTGATTTGCATCAA |
| Proteus mirabilis HI4320 | PMI1479 | -72 | 5.1 | TTGATATTCATCAA |
| Salmonella typhimurium LT2 | STM3474 | -72 | 5.4 | TTGATTTACATCAA |
| Serratia proteamaculans 568 | Spro_4595 | -72 | 5 | TTGATTTGCATCAA |
| Yersinia pestis KIM | y3945 | -71 | 5.4 | TTGATTTACATCAA |
|
Position: -301
Score: 3.6 Sequence: TTAATATTTATCAC
Position: -203
Score: 4.4 Sequence: TTGAGCCATATCAA
Position: -24
Score: 3.6 Sequence: TTAATGAGAAACAA
Locus tag: UTI89_C3909
|
||||
| UTI89_C3909 | -301 | 3.6 | TTAATATTTATCAC | |
| -203 | 4.4 | TTGAGCCATATCAA | ||
| -24 | 3.6 | TTAATGAGAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3821 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -203 | 4.4 | TTGAGCCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -198 | 3.8 | TTGCGGCATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2920 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3505 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4628 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3912 | -93 | 4 | ATTATTTAAATCAT |
|
Position: -3
Score: 3.6 Sequence: TCGATGGAAAGCAA
Locus tag: UTI89_C3917
|
||||
| UTI89_C3917 | -3 | 3.6 | TCGATGGAAAGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malQ | ||||
| Ortholog function: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04837 | -73 | 3.7 | ATGAGGAAGGTCAA |
| Enterobacter sp. 638 | Ent638_3829 | -340 | 3.7 | CTGATACGCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4135 | -251 | 4 | TTGATTACCATGAA |
| Escherichia coli str. K-12 substr. MG1655 | b3416 | -340 | 4 | ATGATCTTAATAAA |
| -75 | 3.7 | ATGAGGAAGGTCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03786 | -370 | 3.6 | TTGTTTTTATTAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0469 | -359 | 3.8 | ATGATTTATTTCAT |
| Salmonella typhimurium LT2 | STM3513 | 16 | 3.7 | TCAATAAAGATCAA |
| Serratia proteamaculans 568 | Spro_4635 | -359 | 3.8 | TTGCTATTGATCAC |
|
Position: -340
Score: 4 Sequence: ATGATCTTAATAAA
Position: -75
Score: 3.7 Sequence: ATGAGGAAGGTCAA
Locus tag: UTI89_C3918
|
||||
| UTI89_C3918 | -340 | 4 | ATGATCTTAATAAA | |
| -75 | 3.7 | ATGAGGAAGGTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malP | ||||
| Ortholog function: Maltodextrin phosphorylase (EC 2.4.1.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04838 | -73 | 3.7 | ATGAGGAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3417 | -340 | 4 | ATGATCTTAATAAA |
| -75 | 3.7 | ATGAGGAAGGTCAA | ||
| Salmonella typhimurium LT2 | STM3514 | 16 | 3.7 | TCAATAAAGATCAA |
| Serratia proteamaculans 568 | Spro_4636 | -359 | 3.8 | TTGCTATTGATCAC |
|
Position: -121
Score: 4.7 Sequence: TTGATTCCTATCAA
Locus tag: UTI89_C4050
|
||||
| UTI89_C4050 | -121 | 4.7 | TTGATTCCTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhjA | ||||
| Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04957 | -73 | 4.7 | TTGATACTTATCAA |
| Edwardsiella tarda EIB202 | ETAE_1715 | -117 | 4.3 | TTGACACTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3518 | -121 | 4.7 | TTGATTCCTATCAA |
| Salmonella typhimurium LT2 | STM3820 | -110 | 4.7 | TTGATACCAATCAA |
| Salmonella typhimurium LT2 | STM3820 | -110 | 4.7 | TTGATACCAATCAA |
| Serratia proteamaculans 568 | Spro_1968 | -89 | 4.6 | TTGATTATCGTCAA |
| Yersinia pestis KIM | y0848 | -152 | 4.7 | TTGATAAAGGTCAA |
|
Position: -271
Score: 4.5 Sequence: ATGTTTTTAATCAA
Locus tag: UTI89_C4280
|
||||
| UTI89_C4280 | -271 | 4.5 | ATGTTTTTAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pstS | ||||
| Ortholog function: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00065 | -243 | 4.4 | CTGTTTTTAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3538 | -93 | 3.8 | TTTACTGTCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4477 | -52 | 3.6 | CTGATTGATAACGA |
| Escherichia coli str. K-12 substr. MG1655 | b3728 | -138 | 3.8 | CTTATTTAAATCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0214 | -33 | 3.9 | TTGTTGATTCTCAA |
| Proteus mirabilis HI4320 | PMI2893 | -46 | 4 | TTGATAGATGTCGA |
|
Position: -111
Score: 4.1 Sequence: TTGTTTGAAATCAC
Locus tag: UTI89_C4294
|
||||
| UTI89_C4294 | -111 | 4.1 | TTGTTTGAAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase protein I | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4125 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3057 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3872 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -69
Score: 3.6 Sequence: GTGATGCAAATCAC
Locus tag: UTI89_C4410
|
||||
| UTI89_C4410 | -69 | 3.6 | GTGATGCAAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ysgA | ||||
| Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00172 | -133 | 4.1 | GTGATTTACATCAC |
| Erwinia amylovora ATCC 49946 | EAM_0199 | -199 | 3.6 | TTAATCAAAATGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0184 | -155 | 3.8 | GTGACTTAAATCAC |
| Salmonella typhimurium LT2 | STM3967 | -169 | 4.2 | ATGACGTAAAACAA |
| Serratia proteamaculans 568 | Spro_0243 | -174 | 3.8 | TTAATGCAGGTCAA |
| Yersinia pestis KIM | y0443 | -296 | 4.2 | GTGATTTAAATCAC |
|
Position: -29
Score: 4 Sequence: CTGACCTGAATCAA
Locus tag: UTI89_C4499
|
||||
| UTI89_C4499 | -29 | 4 | CTGACCTGAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |
|
Position: -102
Score: 4.1 Sequence: TTAATTACGATCAA
Position: -87
Score: 3.8 Sequence: TTGATCTACATCTC
Locus tag: UTI89_C4532
|
||||
| UTI89_C4532 | -102 | 4.1 | TTAATTACGATCAA | |
| -87 | 3.8 | TTGATCTACATCTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: katG | ||||
| Ortholog function: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3942 | -141 | 4.4 | TTAATTAAGATCAA |
| -126 | 3.8 | TTGATCTACATCTC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01819 | -248 | 4.1 | TTGTCATATCTCAA |
| Salmonella typhimurium LT2 | STM4106 | -126 | 3.8 | TTGATCTACATCTC |
| Serratia proteamaculans 568 | Spro_3192 | -139 | 3.7 | TTATTTAAAATCAG |
|
Position: -82
Score: 3.8 Sequence: TCGCTTTACCTCAA
Locus tag: UTI89_C4648
|
||||
| UTI89_C4648 | -82 | 3.8 | TCGCTTTACCTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: soxS | ||||
| Ortholog function: AraC-family transcriptional regulator | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03828 | -83 | 3.8 | TCGCTTTACCTCAA |
| Enterobacter sp. 638 | Ent638_0266 | -217 | 3.8 | ATGCTTTTAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b4062 | -82 | 3.8 | TCGCTTTACCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04462 | -95 | 3.4 | TTCTTTTCCATAAA |
| Salmonella typhimurium LT2 | STM4265 | -83 | 3.8 | TCGCTTTACCTCAA |
|
Position: -17
Score: 3.4 Sequence: TTGAGGTAAAGCGA
Locus tag: UTI89_C4649
|
||||
| UTI89_C4649 | -17 | 3.4 | TTGAGGTAAAGCGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: soxR | ||||
| Ortholog function: redox-sensitive transcriptional activator (MerR-family transcriptional regulator) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03827 | -17 | 3.4 | TTGAGGTAAAGCGA |
| Escherichia coli str. K-12 substr. MG1655 | b4063 | -17 | 3.4 | TTGAGGTAAAGCGA |
| Proteus mirabilis HI4320 | PMI2705 | -69 | 3.4 | TTGTATTGGGACAA |
| 16 | 3.7 | TAGATTTTAATCGA | ||
| Salmonella typhimurium LT2 | STM4266 | -17 | 3.4 | TTGAGGTAAAGCGA |
|
Position: -140
Score: 4.6 Sequence: TTGATTAAAGACAA
Locus tag: UTI89_C4660
|
||||
| UTI89_C4660 | -140 | 4.6 | TTGATTAAAGACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03814 | -146 | 4.7 | TTGATTAAAGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1875 | -135 | 4.8 | TTGATCAAAAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b4070 | -141 | 4.7 | TTGATTAAAGACAA |
| Salmonella typhimurium LT2 | STM4277 | -143 | 4.7 | TTGATTAAAGACAA |
|
Position: -25
Score: 4.5 Sequence: TTGTTAAAAAACAA
Locus tag: UTI89_C4735
|
||||
| UTI89_C4735 | -25 | 4.5 | TTGTTAAAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuA | ||||
| Ortholog function: C4-dicarboxylate transporter DcuA | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4138 | -25 | 4.5 | TTGTTAAAAAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b4138 | -25 | 4.5 | TTGTTAAAAAACAA |
|
Position: -249
Score: 4.8 Sequence: TTGAGCTACATCAA
Locus tag: UTI89_C4842
|
||||
| UTI89_C4842 | -249 | 4.8 | TTGAGCTACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03580 | -235 | 4.2 | TTGATGCAAATCAC |
| Edwardsiella tarda EIB202 | ETAE_0423 | -196 | 4.7 | TTGATTCAGGTCAA |
| Enterobacter sp. 638 | Ent638_0437 | -244 | 4.7 | TTGTTCTGAATCAA |
| -213 | 4.2 | TTGATGCAAATCAC | ||
| Erwinia amylovora ATCC 49946 | EAM_3059 | -106 | 4.2 | TTGCTTCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0375 | -182 | 4.8 | TTGCTCTACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4238 | -249 | 4.8 | TTGAGCTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04646 | -248 | 4.2 | TTGTTCTGGGTCAA |
| -217 | 4.2 | TTGATGCAAATCAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4499 | -160 | 4.7 | TTGTTTCAGATCAA |
| Proteus mirabilis HI4320 | PMI3451 | -184 | 4.9 | TTGATTTAGATCAG |
| Salmonella typhimurium LT2 | STM4452 | -249 | 5 | TTGTTCTACATCAA |
| -218 | 4.2 | TTGATGCAAATCAC | ||
| Serratia proteamaculans 568 | Spro_0525 | -217 | 4.7 | TTGTTCTACGTCAA |
| Yersinia pestis KIM | y0733 | -192 | 4.6 | TTGTTCTAGGTCAA |
|
Position: 7
Score: 3.8 Sequence: TTGTTATGACACAA
Locus tag: UTI89_C5040
|
||||
| UTI89_C5040 | 7 | 3.8 | TTGTTATGACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjiH | ||||
| Ortholog function: putative inner membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4330 | -5 | 3.9 | TTGTTATGACACAA |
| Salmonella typhimurium LT2 | STM4514.S | -283 | 4.4 | TTGACTAACGTCAA |