Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of UxuR regulog to Yersinia pestis FV-1

Reference regulog properties
Source regulog: UxuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: Glucuronate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pestis FV-1
Orthologous TF(s) YpesF_010100015724
Regulated genes 5
Built upon 44 sites [see more]
Predicted regulatory interactions in Yersinia pestis FV-1
Locus tag Position Score Sequence
Position: -226
Score: 5.2
Sequence: AACTTGGTTAACCAATAC
Locus tag: YpesF_010100006139
YpesF_010100006139 -226 5.2 AACTTGGTTAACCAATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntP
Ortholog function: Fructuronate transporter GntP
Escherichia coli str. K-12 substr. MG1655 b4321 -177 5.4 AAATTGGTTAACCACATC
-71 5.6 ACAATGGTTGACCAATTT
Yersinia pestis KIM y3426 -226 5.2 AACTTGGTTAACCAATAC
Edwardsiella tarda EIB202 ETAE_1036 -70 5.1 TTATTGGTCAACCAAAAA
-29 5.8 AAATTGGTTGACCAAATG
Position: -217
Score: 5.2
Sequence: ATTTTGGTGAACCAATAT
Locus tag: YpesF_010100010624
YpesF_010100010624 -217 5.2 ATTTTGGTGAACCAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaT
Ortholog function: Putative MFS superfamily hexuronate transporter
Yersinia pestis KIM y3232 -217 5.2 ATTTTGGTGAACCAATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1967 -162 5.9 AATTTGGTAAACCAATTT
Position: -194
Score: 5.4
Sequence: ATATTGGTTCACCAAAAT
Locus tag: YpesF_010100010629
YpesF_010100010629 -194 5.4 ATATTGGTTCACCAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaR
Ortholog function: periplasmic binding protein/LacI transcriptional regulator
Yersinia pestis KIM y3231 -194 5.4 ATATTGGTTCACCAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -176 6 AAATTGGTTTACCAAATT
Position: -105
Score: 4.5
Sequence: TAAGTGGTATAACAAATC
Locus tag: YpesF_010100018074
YpesF_010100018074 -105 4.5 TAAGTGGTATAACAAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuR
Ortholog function: exu regulon transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b3094 -47 4.7 AAAGTGGTATAACAAATA
Yersinia pestis KIM y3602 -105 4.5 TAAGTGGTATAACAAATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0643 -98 4.5 TAAGTGGTATAACAAATC
Edwardsiella tarda EIB202 ETAE_0434 -68 4.2 AAAGTGGTATAACAACTC
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