Propagation of Fnr regulog to Cronobacter turicensis z3032
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Cronobacter turicensis z3032 |
| Orthologous TF(s) | Ctu_20340 |
| Regulated genes | 51 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -39
Score: 3.8 Sequence: TTGCTGTAAGGCAA
Locus tag: Ctu_00090
|
||||
| Ctu_00090 | -39 | 3.8 | TTGCTGTAAGGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpG | ||||
| Ortholog function: ATP synthase gamma chain (EC 3.6.3.14) | ||||
| Enterobacter sp. 638 | Ent638_4131 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3475 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4513 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3733 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04138 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0041 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3063 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3866 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -34
Score: 3.6 Sequence: ATGCGCTAAAACAA
Locus tag: Ctu_02610
|
||||
| Ctu_02610 | -34 | 3.6 | ATGCGCTAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ysgA | ||||
| Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00172 | -133 | 4.1 | GTGATTTACATCAC |
| Erwinia amylovora ATCC 49946 | EAM_0199 | -199 | 3.6 | TTAATCAAAATGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0184 | -155 | 3.8 | GTGACTTAAATCAC |
| Salmonella typhimurium LT2 | STM3967 | -169 | 4.2 | ATGACGTAAAACAA |
| Serratia proteamaculans 568 | Spro_0243 | -174 | 3.8 | TTAATGCAGGTCAA |
| Yersinia pestis KIM | y0443 | -296 | 4.2 | GTGATTTAAATCAC |
|
Position: -73
Score: 4.4 Sequence: TTGATCCATATCAT
Locus tag: Ctu_03680
|
||||
| Ctu_03680 | -73 | 4.4 | TTGATCCATATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcC | ||||
| Ortholog function: COG1242: Predicted Fe-S oxidoreductase | ||||
| Enterobacter sp. 638 | Ent638_3655 | -65 | 3.7 | TTTATTCAAATGAA |
| -32 | 4 | TTGATCCAGGTCAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0313 | -70 | 3.7 | TTGATCGCGGTCAT |
| Escherichia coli str. K-12 substr. MG1655 | b3211 | -75 | 4 | TTGATCCAGGTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03623 | -75 | 4 | TTGATCCAGGTCAT |
| Salmonella typhimurium LT2 | STM3329 | -75 | 4 | TTGATCCAGGTCAT |
| Serratia proteamaculans 568 | Spro_4343 | -74 | 4.2 | TTGATCTCTGTCAT |
| Yersinia pestis KIM | y0127 | -133 | 4.2 | TTGATCTCTGTCAT |
|
Position: -294
Score: 5 Sequence: TTGATATATGTCAA
Locus tag: Ctu_06270
|
||||
| Ctu_06270 | -294 | 5 | TTGATATATGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcA | ||||
| Ortholog function: Aerobic respiration control protein arcA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03387 | -291 | 5.1 | TTGATATATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0561 | -300 | 5.1 | TTGATATATGTCAA |
| Enterobacter sp. 638 | Ent638_0562 | -291 | 5.1 | TTGATATATGTCAA |
| Erwinia amylovora ATCC 49946 | EAM_0640 | -399 | 4.5 | TTGATGCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3893 | -339 | 5.1 | TTGATATATGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4401 | -291 | 5.1 | TTGATATATGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04856 | -291 | 5.1 | TTGATATATGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0562 | -282 | 4.9 | TTGATGTACGTCAA |
| Proteus mirabilis HI4320 | PMI3719 | -343 | 4 | ATTACATAAATCAA |
| -282 | 4.6 | TTGATATGTGTCAA | ||
| Salmonella typhimurium LT2 | STM4598 | -291 | 5.1 | TTGATATATGTCAA |
| Serratia proteamaculans 568 | Spro_0681 | -299 | 5.1 | TTGATATATGTCAA |
| Yersinia pestis KIM | y3721 | -298 | 5.1 | TTGATATATGTCAA |
|
Position: -36
Score: 4.7 Sequence: CTGATTTCAATCAA
Locus tag: Ctu_07480
|
||||
| Ctu_07480 | -36 | 4.7 | CTGATTTCAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -116 | 4.7 | CTGATTTCAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0658 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0659 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -115 | 4.8 | ATGATTTCAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2047 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0151 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4012 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0766 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: -114
Score: 4.3 Sequence: TTGATGTGTATCAG
Locus tag: Ctu_12550
|
||||
| Ctu_12550 | -114 | 4.3 | TTGATGTGTATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuC | ||||
| Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02537 | -106 | 4.7 | TTGATTTTAATCAG |
| Edwardsiella tarda EIB202 | ETAE_1192 | -147 | 4.1 | TTGACCAATATCAG |
| Enterobacter sp. 638 | Ent638_1152 | -102 | 4.4 | TTGATTTTAGTCAT |
| Escherichia coli str. K-12 substr. MG1655 | b0621 | -103 | 4.7 | TTGATTTTAATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00654 | -104 | 4.5 | TTGATTTGCATCAG |
| Proteus mirabilis HI4320 | PMI0652 | -127 | 4.5 | TTGATATATGTCAT |
| Salmonella typhimurium LT2 | STM0627 | -138 | 3.6 | TTCATCTTTAGCAA |
| -101 | 4.1 | GTGATTTTAATCAG | ||
| Serratia proteamaculans 568 | Spro_1579 | -107 | 4 | TTGACGGATATCAT |
|
Position: -303
Score: 3.6 Sequence: TTAACATTTGTCAA
Locus tag: Ctu_13280
|
||||
| Ctu_13280 | -303 | 3.6 | TTAACATTTGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02438 | 25 | 3.6 | ATGTGAAAAAACAA |
| Edwardsiella tarda EIB202 | ETAE_2588 | 10 | 4 | |
| Escherichia coli str. K-12 substr. MG1655 | b0721 | 10 | 3.6 | ATGTGAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00728 | -104 | 3.6 | ATGTGAAAAAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1426 | -127 | 4 | TTGTGAAAAAACAA |
| Proteus mirabilis HI4320 | PMI0565 | -2 | 4 | TTGTGAAAAAACAA |
| Salmonella typhimurium LT2 | STM0732 | 10 | 3.6 | ATGTGAAAAAACAA |
| Serratia proteamaculans 568 | Spro_1263 | -249 | 4.1 | GTGATCTAAATCAC |
| Yersinia pestis KIM | y3071 | -224 | 3.8 | ATGTTATCAATCAG |
|
Position: -164
Score: 3.3 Sequence: TCTATAAATATCAT
Locus tag: Ctu_14330
|
||||
| Ctu_14330 | -164 | 3.3 | TCTATAAATATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moeA | ||||
| Ortholog function: Molybdopterin biosynthesis protein MoeA | ||||
| Edwardsiella tarda EIB202 | ETAE_1153 | -335 | 3.8 | ATGATACAGATCAC |
| Enterobacter sp. 638 | Ent638_1321 | -155 | 3.3 | TCTATAAATATCAT |
| Erwinia amylovora ATCC 49946 | EAM_1284 | -244 | 3.5 | CTGTGATAAATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2836 | -383 | 3.7 | ATGATGTAAAGCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0827 | 18 | 3.7 | TTGATGTCGCTCGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1540 | -244 | 3.9 | TTGACAGTGGTCAA |
| Proteus mirabilis HI4320 | PMI0637 | -182 | 3.7 | TTAAAATACAACAA |
| Yersinia pestis KIM | y2673 | -202 | 3.8 | TTGATATATATATA |
|
Position: -107
Score: 4.4 Sequence: TTGCGTTATATCAA
Locus tag: Ctu_14840
|
||||
| Ctu_14840 | -107 | 4.4 | TTGCGTTATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02206 | -76 | 4.4 | TTGCGCTAAATCAA |
| Enterobacter sp. 638 | Ent638_1390 | -110 | 4.4 | TTGCGCTAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00907 | -76 | 4.4 | TTGCGCTAAATCAA |
|
Position: -43
Score: 3.6 Sequence: TTAATGTTAATTAA
Locus tag: Ctu_15500
|
||||
| Ctu_15500 | -43 | 3.6 | TTAATGTTAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ssuE | ||||
| Ortholog function: FMN reductase (EC 1.5.1.29) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02124 | -43 | 3.7 | TTAATGAAAATCGA |
| Enterobacter sp. 638 | Ent638_1456 | -181 | 3.5 | TTGACCTGAGGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0937 | -278 | 3.6 | GCCATTTAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00973 | -182 | 3.8 | TTGACCTGCGACAA |
| Serratia proteamaculans 568 | Spro_1739 | -256 | 4.6 | TTGATTAAAAGCAA |
| Yersinia pestis KIM | y0246 | -252 | 3.7 | GTGATCTGGCTCAA |
|
Position: -148
Score: 4.8 Sequence: TTGATGCACATCAA
Locus tag: Ctu_16880
|
||||
| Ctu_16880 | -148 | 4.8 | TTGATGCACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01946 | -163 | 5.2 | TTGATGTACATCAA |
| Edwardsiella tarda EIB202 | ETAE_2070 | -162 | 5.1 | TTGATTTGAATCAA |
| Enterobacter sp. 638 | Ent638_1624 | -149 | 5.1 | TTGATTCATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -146 | 4.2 | TTGACCAGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -149 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -150 | 5.2 | TTGATTAACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -148 | 4.8 | TTGATGCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -150 | 4.2 | TTGATGTTGTTCAA |
| Proteus mirabilis HI4320 | PMI0875 | -153 | 5.5 | TTGATATAAATCAA |
| Salmonella typhimurium LT2 | STM1211 | -150 | 4.8 | TTGATGCACATCAA |
| Serratia proteamaculans 568 | Spro_1926 | -149 | 5.2 | TTGATGTACATCAA |
| Yersinia pestis KIM | y1777 | -148 | 5.4 | TTGATATATATCAA |
|
Position: -34
Score: 3.6 Sequence: GTGACCTGAAACAA
Locus tag: Ctu_17040
|
||||
| Ctu_17040 | -34 | 3.6 | GTGACCTGAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepT | ||||
| Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01926 | -42 | 3.3 | TTGCTTATTAATAA |
| Escherichia coli str. K-12 substr. MG1655 | b1127 | -121 | 3.7 | TTTATATTCATTAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01133 | -347 | 3.5 | TTGTTGATGGTCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2810 | -156 | 3.8 | TTGATGAAAAGCAT |
| Proteus mirabilis HI4320 | PMI0882 | -92 | 3.7 | TTGATTTAATTAAT |
| Salmonella typhimurium LT2 | STM1227 | -375 | 4.1 | TTGTTAATGGTCAA |
| Serratia proteamaculans 568 | Spro_2009 | -96 | 3.6 | ATGATTTCCGTTAA |
| Yersinia pestis KIM | y1791 | -23 | 4 | TTGATCATGATCAC |
|
Position: 3
Score: 4 Sequence: TTTACCTTTATCAA
Locus tag: Ctu_18990
|
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| Ctu_18990 | 3 | 4 | TTTACCTTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyfH | ||||
| Ortholog function: Hydrogenase-4 component H (EC 1.-.-.-) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1240 | -91 | 3.5 | TTGAATTAAAGAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2488 | -29 | 3.8 | ATGTTTCATATCAT |
| Proteus mirabilis HI4320 | PMI2521 | -114 | 4.9 | TTGATTTTTAACAA |
|
Position: -33
Score: 4.8 Sequence: TTGACTAATATCAA
Locus tag: Ctu_20340
|
||||
| Ctu_20340 | -33 | 4.8 | TTGACTAATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -7
Score: 3.7 Sequence: GTGAGTAATGTCAA
Locus tag: Ctu_22100
|
||||
| Ctu_22100 | -7 | 3.7 | GTGAGTAATGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsA | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02177 | -117 | 3.6 | CTGATTTTTCTCAT |
| Enterobacter sp. 638 | Ent638_1418 | -3 | 3.8 | TCTATGAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0894 | -184 | 4.3 | TTGATACCGAACAA |
| Salmonella typhimurium LT2 | STM0964 | -96 | 4.2 | |
| Yersinia pestis KIM | y0864 | -199 | 4.2 | TTGATTCCAGACAA |
|
Position: -117
Score: 4.3 Sequence: TTAATTCAGATCAA
Locus tag: Ctu_23630
|
||||
| Ctu_23630 | -117 | 4.3 | TTAATTCAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -117 | 4.1 | TTAATCTGGATCAA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -157 | 4.9 | TTGATGTCTATCAA |
| Enterobacter sp. 638 | Ent638_2283 | -117 | 4.1 | TTAATCTGGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1884 | -160 | 5.4 | TTGATCTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -160 | 4.8 | TTGATCTGGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -162 | 4.8 | TTGATTTAAATCAC |
| -117 | 4.1 | TTAATCCAGATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -247 | 4.2 | TTGATTTCACTCAT |
| -80 | 4.1 | TTAATCTGGATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -160 | 5 | TTGATTTGGATCAA |
| Proteus mirabilis HI4320 | PMI1350 | -164 | 4.8 | TTGATGTGGATCAA |
| Salmonella typhimurium LT2 | STM1732 | -117 | 4.1 | TTAATCTGGATCAA |
| Serratia proteamaculans 568 | Spro_2674 | -131 | 5 | TTGATTCAGATCAA |
| Yersinia pestis KIM | y2044 | -171 | 3.6 | ATGATAAATGGCAA |
| -147 | 4.4 | ATGATCCAGATCAA | ||
|
Position: -233
Score: 4.7 Sequence: TTGATTTAGATCAC
Locus tag: Ctu_23840
|
||||
| Ctu_23840 | -233 | 4.7 | TTGATTTAGATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -238 | 4.1 | TTGATCTGGATCAC |
| Enterobacter sp. 638 | Ent638_2304 | -249 | 4.5 | TTGATTCAGATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -311 | 3.6 | TCGATGTTGATCAC |
| -305 | 3.8 | TTGATCACAAAAAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -237 | 4.3 | TTGATTTGGATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -233 | 4.7 | TTGATCTAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -134 | 4.5 | GTGATTAAGATCAA |
| Proteus mirabilis HI4320 | PMI1486 | -242 | 3.8 | GTGATGTAGATCAC |
| Salmonella typhimurium LT2 | STM1749 | -238 | 4.7 | TTGATTTAGATCAC |
| Serratia proteamaculans 568 | Spro_2704 | -274 | 4.4 | ATGATTTAAATCAC |
|
Position: 37
Score: 4.3 Sequence: TTGTCTTAAATCAT
Locus tag: Ctu_24240
|
||||
| Ctu_24240 | 37 | 4.3 | TTGTCTTAAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemA | ||||
| Ortholog function: Glutamyl-tRNA reductase (EC 1.2.1.70) | ||||
| Enterobacter sp. 638 | Ent638_2338 | -82 | 4.3 | TTGTCTTAAATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2189 | -134 | 4.8 | |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02235 | -143 | 4.4 | TTGTCTGAAATCAA |
| Salmonella typhimurium LT2 | STM1777 | -131 | 4.3 | TTGTCTTAAATCAT |
|
Position: -104
Score: 4.4 Sequence: TTGACAATCATCAA
Position: -82
Score: 3.7 Sequence: TTCTTTAAAATCAG
Locus tag: Ctu_28650
|
||||
| Ctu_28650 | -104 | 4.4 | TTGACAATCATCAA | |
| -82 | 3.7 | TTCTTTAAAATCAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: norV | ||||
| Ortholog function: Anaerobic nitric oxide reductase flavorubredoxin | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04064 | -90 | 4.2 | TTATTTAAAATCAA |
| Enterobacter sp. 638 | Ent638_3182 | -147 | 4.1 | TTGACAGTAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03045 | -53 | 3.7 | TTGATATAAGCCAG |
| Salmonella typhimurium LT2 | STM2840 | -89 | 3.7 | TCAATACAAATCAA |
|
Position: -131
Score: 4.1 Sequence: TCGTTGAAAATCAA
Locus tag: Ctu_29020
|
||||
| Ctu_29020 | -131 | 4.1 | TCGTTGAAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoM | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00519 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2374 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2277 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02667 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3078 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2317 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3297 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1641 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -92
Score: 3.7 Sequence: ATGACGTTAATCAT
Locus tag: Ctu_29220
|
||||
| Ctu_29220 | -92 | 3.7 | ATGACGTTAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00498 | -92 | 4.1 | ATGATGTTAATCAT |
| Edwardsiella tarda EIB202 | ETAE_2397 | -93 | 4.1 | ATGATGTTAATCAT |
| Enterobacter sp. 638 | Ent638_2840 | -92 | 4.1 | ATGATGTTAATCAT |
| Erwinia amylovora ATCC 49946 | EAM_2301 | -119 | 3.9 | TTGCTTTCGGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -91 | 4.1 | ATGATGTTAATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2296 | -92 | 4.1 | ATGATGTTAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -91 | 4.1 | ATGATGTTAATCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -117 | 4.1 | ATGATGTTAATCAT |
| Proteus mirabilis HI4320 | PMI1771 | -165 | 3.7 | TTGATGATTGGCAA |
| Salmonella typhimurium LT2 | STM2337 | -92 | 4.1 | ATGATGTTAATCAT |
| Serratia proteamaculans 568 | Spro_3316 | -121 | 4.1 | ATGATGTTAATCAT |
| Yersinia pestis KIM | y1622 | -163 | 4.1 | ATGATGTTAATCAT |
|
Position: -99
Score: 4.5 Sequence: TTGATCCCGATCAA
Locus tag: Ctu_30810
|
||||
| Ctu_30810 | -99 | 4.5 | TTGATCCCGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: upp | ||||
| Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00293 | -103 | 4.6 | TTGATCCATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_1087 | -97 | 4.5 | TTGATTGAGATCAT |
| Enterobacter sp. 638 | Ent638_2986 | -97 | 4.4 | TTGATCACCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1255 | -169 | 4.3 | TTGATCTGGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2498 | -95 | 4.6 | TTGACTAAAGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02821 | -96 | 5 | TTGATATACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2759 | -103 | 5.1 | TTGATGAAAATCAA |
| Proteus mirabilis HI4320 | PMI1574 | -97 | 5.1 | TTGATCAATATCAA |
| Salmonella typhimurium LT2 | STM2498 | -103 | 4.6 | TTGATCCAGGTCAA |
| Yersinia pestis KIM | y1408 | -98 | 4.4 | TTGATCTGAATCAG |
|
Position: -147
Score: 4.5 Sequence: TTGATCGGGATCAA
Locus tag: Ctu_30820
|
||||
| Ctu_30820 | -147 | 4.5 | TTGATCGGGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_1086 | -186 | 4.7 | ATGATCTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -198 | 4.3 | CTGATCCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -243 | 4.6 | TTGACTTTAGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -137 | 5.2 | TTGATTTTCATCAA |
| Proteus mirabilis HI4320 | PMI1575 | -148 | 5 | TTGATATTGATCAA |
| Salmonella typhimurium LT2 | STM2499.S | -309 | 4.4 | TTGACCTGGATCAA |
| Yersinia pestis KIM | y1407 | -312 | 4.5 | CTGATTCAGATCAA |
| -274 | 3.7 | ATGCTAAAAATCAG | ||
|
Position: -126
Score: 5.5 Sequence: TTGATTTAAATCAA
Position: -73
Score: 4.9 Sequence: TTGCTTTACATCAA
Locus tag: Ctu_31690
|
||||
| Ctu_31690 | -126 | 5.5 | TTGATTTAAATCAA | |
| -73 | 4.9 | TTGCTTTACATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ung | ||||
| Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00204 | -209 | 5.6 | TTGATTTAAATCAA |
| -156 | 5.1 | TTGTTTTACATCAA | ||
| Edwardsiella tarda EIB202 | ETAE_2734 | -396 | 4.1 | TTGAGATAGAGCAA |
| -280 | 5.4 | TTGATCTAAATCAA | ||
| -227 | 4.7 | ATGTTTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_3065 | -194 | 5 | TTGACCTAAATCAA |
| -142 | 5.1 | TTGTTTTATATCAA | ||
| 34 | 4.2 | CTGATGAAAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2526 | -177 | 4.9 | TTGATGCAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3289 | -228 | 5.1 | TTGACTTAAATCAA |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b2580 | -197 | 5.6 | TTGATTTAAATCAA |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02903 | -206 | 5.5 | TTGATATAAATCAA |
| -153 | 5.1 | TTGTTTTACATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3371 | -233 | 4.1 | TTGATTCAGAACAG |
| Proteus mirabilis HI4320 | PMI1899 | -221 | 5.1 | TTGATAAATATCAA |
| -168 | 5.2 | TTGTTTTAAATCAA | ||
| Salmonella typhimurium LT2 | STM2647 | -208 | 5.6 | TTGATTTAAATCAA |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Serratia proteamaculans 568 | Spro_3683 | -222 | 5 | TTGATTAAAGTCAA |
| -169 | 4.4 | ATGTTTTATGTCAA | ||
| Yersinia pestis KIM | y1281 | -213 | 5.2 | TTGATTCAAATCAA |
| -160 | 4.7 | ATGTTTTATATCAA | ||
|
Position: -248
Score: 4.1 Sequence: TTGTCCTGCATCAA
Position: -217
Score: 4.2 Sequence: TTGATGCAAATCAC
Locus tag: Ctu_36130
|
||||
| Ctu_36130 | -248 | 4.1 | TTGTCCTGCATCAA | |
| -217 | 4.2 | TTGATGCAAATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03580 | -235 | 4.2 | TTGATGCAAATCAC |
| Edwardsiella tarda EIB202 | ETAE_0423 | -196 | 4.7 | TTGATTCAGGTCAA |
| Enterobacter sp. 638 | Ent638_0437 | -244 | 4.7 | TTGTTCTGAATCAA |
| -213 | 4.2 | TTGATGCAAATCAC | ||
| Erwinia amylovora ATCC 49946 | EAM_3059 | -106 | 4.2 | TTGCTTCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0375 | -182 | 4.8 | TTGCTCTACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4238 | -249 | 4.8 | TTGAGCTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04646 | -248 | 4.2 | TTGTTCTGGGTCAA |
| -217 | 4.2 | TTGATGCAAATCAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4499 | -160 | 4.7 | TTGTTTCAGATCAA |
| Proteus mirabilis HI4320 | PMI3451 | -184 | 4.9 | TTGATTTAGATCAG |
| Salmonella typhimurium LT2 | STM4452 | -249 | 5 | TTGTTCTACATCAA |
| -218 | 4.2 | TTGATGCAAATCAC | ||
| Serratia proteamaculans 568 | Spro_0525 | -217 | 4.7 | TTGTTCTACGTCAA |
| Yersinia pestis KIM | y0733 | -192 | 4.6 | TTGTTCTAGGTCAA |
|
Position: -2
Score: 3.7 Sequence: TCGTGATTAATCAA
Locus tag: Ctu_37040
|
||||
| Ctu_37040 | -2 | 3.7 | TCGTGATTAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdD | ||||
| Ortholog function: Fumarate reductase subunit D | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03681 | -151 | 4 | TTAATCAGAATCAA |
| Enterobacter sp. 638 | Ent638_0340 | -31 | 3.6 | TTGCGGAATAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4127 | -239 | 4.1 | |
| Proteus mirabilis HI4320 | PMI3585 | -208 | 4 | |
| Salmonella typhimurium LT2 | STM4340 | -191 | 4.4 | TTAATCAAAATCAA |
| Serratia proteamaculans 568 | Spro_0416 | -63 | 3.7 | TTTATAAATATTAA |
|
Position: -60
Score: 4.1 Sequence: TTGATTTTGGTAAA
Locus tag: Ctu_38040
|
||||
| Ctu_38040 | -60 | 4.1 | TTGATTTTGGTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: Malate synthase (EC 2.3.3.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03906 | -162 | 4.2 | TTTATTGTTATCAA |
| Enterobacter sp. 638 | Ent638_0218 | -111 | 4 | TTGATTTTAGAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04395 | -154 | 4.1 | TTCATTGTTATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4396 | -61 | 4 | |
| Proteus mirabilis HI4320 | PMI2764 | -64 | 4.2 | |
|
Position: -72
Score: 5.4 Sequence: TTGATTTACATCAA
Locus tag: Ctu_38830
|
||||
| Ctu_38830 | -72 | 5.4 | TTGATTTACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirB | ||||
| Ortholog function: Nitrite reductase, large subunit (EC 1.7.1.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04789 | -72 | 5.4 | TTGATTTACATCAA |
| Enterobacter sp. 638 | Ent638_3793 | -72 | 5 | TTGATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4079 | -71 | 5.3 | TTGATATACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3365 | -72 | 5.4 | TTGATTTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03752 | -72 | 5 | TTGATTTGCATCAA |
| Proteus mirabilis HI4320 | PMI1479 | -72 | 5.1 | TTGATATTCATCAA |
| Salmonella typhimurium LT2 | STM3474 | -72 | 5.4 | TTGATTTACATCAA |
| Serratia proteamaculans 568 | Spro_4595 | -72 | 5 | TTGATTTGCATCAA |
| Yersinia pestis KIM | y3945 | -71 | 5.4 | TTGATTTACATCAA |
|
Position: 16
Score: 3.8 Sequence: TTGAGTTAACGCAA
Locus tag: Ctu_39190
|
||||
| Ctu_39190 | 16 | 3.8 | TTGAGTTAACGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoB | ||||
| Ortholog function: Ferrous iron transport protein B | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04831 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3822 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3409 | -203 | 4.4 | TTGAGCCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03779 | -198 | 3.8 | TTGCGGCATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0208 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2921 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3506 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4629 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3911 | -93 | 4 | ATTATTTAAATCAT |
|
Position: -56
Score: 4 Sequence: CTGACCTGAATCAA
Locus tag: Ctu_41100
|
||||
| Ctu_41100 | -56 | 4 | CTGACCTGAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |