Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RhaS regulog to Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433

Reference regulog properties
Source regulog: RhaS - Enterobacteriales
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator
Biological process: Rhamnose utilization
Effector: Rhamnose
Phylum: Proteobacteria
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
Orthologous TF(s) Sententeric_010100015296
Regulated genes 2
Built upon 31 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
Locus tag Position Score Sequence
Position: -106
Score: 10.7
Sequence: ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT
Locus tag: Sententeric_010100015346
Sententeric_010100015346 -106 10.7 ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiA
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Salmonella typhimurium LT2 STM4054 -106 10.7 ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT
Position: -146
Score: 11.1
Sequence: CTCTTTGCGTTTTTGCCA-(15)-TGGCAGAAACAAAAAGGT
Locus tag: Sententeric_010100017521
Sententeric_010100017521 -146 11.1 CTCTTTGCGTTTTTGCCA-(15)-TGGCAGAAACAAAAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiN2
Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Salmonella typhimurium LT2 STM1911 -146 11.1 CTCTTTGCGTTTTTGCCA-(15)-TGGCAGAAACAAAAAGGT