Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PaaR regulog to Ralstonia pickettii 12J

Reference regulog properties
Source regulog: PaaR - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Betaproteobacteria
Propagated regulon:
Target genome Ralstonia pickettii 12J
Orthologous TF(s) Rpic_4562
Regulated genes 3
Built upon 18 sites [see more]
Predicted regulatory interactions in Ralstonia pickettii 12J
Locus tag Position Score Sequence
Position: -96
Score: 6.3
Sequence: ATTGACCGACCGGTCGGACGGT
Locus tag: Rpic_4567
Rpic_4567 -96 6.3 ATTGACCGACCGGTCGGACGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: Phenylacetate-CoA oxygenase, PaaA subunit
Cupriavidus taiwanensis RALTA_A2973 -83 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia eutropha H16 H16_A3520 -79 5.7 ATTGACCGACCGGTCGGCATAT
Ralstonia eutropha JMP134 Reut_A3206 -95 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia metallidurans CH34 Rmet_3369 -113 6.8 ATTGACCGACCGGTCGGTTTAT
Ralstonia pickettii 12J Rpic_4567 -96 6.3 ATTGACCGACCGGTCGGACGGT
Ralstonia solanacearum GMI1000 RSp0604 -97 6.3 ATTGACCGACCGGTCGGACGAT
Position: -53
Score: 6.5
Sequence: ATTAACCGACCGGTTGGTCGGC
Locus tag: Rpic_3114
Rpic_3114 -53 6.5 ATTAACCGACCGGTTGGTCGGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaF2
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17)
Ralstonia metallidurans CH34 Rmet_3162 -149 6.1 ATTAACCGACCAGTCGGTCGGC
Ralstonia pickettii 12J Rpic_3114 -53 6.5 ATTAACCGACCGGTTGGTCGGC
Ralstonia solanacearum GMI1000 RSc2872 -53 6.5 ATTAACCGACCGGTTGGTCGGC
Position: -52
Score: 6.2
Sequence: GCCGACCAACCGGTCGGTTAAT
Locus tag: Rpic_3115
Rpic_3115 -52 6.2 GCCGACCAACCGGTCGGTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaF
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17)
Cupriavidus taiwanensis RALTA_A2763 -89 5.7 GCCGACCGACTGGTCGGTTTAT
Ralstonia eutropha H16 H16_A3311 -90 5.7 GCCGACCGACTGGTCGGTTTAT
Ralstonia eutropha JMP134 Reut_A3015 -61 6.2 ACCGACCGATCGGTCGGTTAAT
Ralstonia metallidurans CH34 Rmet_3163 -100 5.8 GCCGACCGACTGGTCGGTTAAT
Ralstonia pickettii 12J Rpic_3115 -52 6.2 GCCGACCAACCGGTCGGTTAAT
Ralstonia solanacearum GMI1000 RSc2873 -48 6.2 GCCGACCAACCGGTCGGTTAAT
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