Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PaaR regulog to Ralstonia metallidurans CH34

Reference regulog properties
Source regulog: PaaR - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Betaproteobacteria
Propagated regulon:
Target genome Ralstonia metallidurans CH34
Orthologous TF(s) Rmet_3375
Regulated genes 3
Built upon 18 sites [see more]
Predicted regulatory interactions in Ralstonia metallidurans CH34
Locus tag Position Score Sequence
Position: -149
Score: 6.1
Sequence: ATTAACCGACCAGTCGGTCGGC
Locus tag: Rmet_3162
Rmet_3162 -149 6.1 ATTAACCGACCAGTCGGTCGGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaF2
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17)
Ralstonia metallidurans CH34 Rmet_3162 -149 6.1 ATTAACCGACCAGTCGGTCGGC
Ralstonia pickettii 12J Rpic_3114 -53 6.5 ATTAACCGACCGGTTGGTCGGC
Ralstonia solanacearum GMI1000 RSc2872 -53 6.5 ATTAACCGACCGGTTGGTCGGC
Position: -100
Score: 5.8
Sequence: GCCGACCGACTGGTCGGTTAAT
Locus tag: Rmet_3163
Rmet_3163 -100 5.8 GCCGACCGACTGGTCGGTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaF
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17)
Cupriavidus taiwanensis RALTA_A2763 -89 5.7 GCCGACCGACTGGTCGGTTTAT
Ralstonia eutropha H16 H16_A3311 -90 5.7 GCCGACCGACTGGTCGGTTTAT
Ralstonia eutropha JMP134 Reut_A3015 -61 6.2 ACCGACCGATCGGTCGGTTAAT
Ralstonia metallidurans CH34 Rmet_3163 -100 5.8 GCCGACCGACTGGTCGGTTAAT
Ralstonia pickettii 12J Rpic_3115 -52 6.2 GCCGACCAACCGGTCGGTTAAT
Ralstonia solanacearum GMI1000 RSc2873 -48 6.2 GCCGACCAACCGGTCGGTTAAT
Position: -113
Score: 6.8
Sequence: ATTGACCGACCGGTCGGTTTAT
Locus tag: Rmet_3369
Rmet_3369 -113 6.8 ATTGACCGACCGGTCGGTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: Phenylacetate-CoA oxygenase, PaaA subunit
Cupriavidus taiwanensis RALTA_A2973 -83 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia eutropha H16 H16_A3520 -79 5.7 ATTGACCGACCGGTCGGCATAT
Ralstonia eutropha JMP134 Reut_A3206 -95 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia metallidurans CH34 Rmet_3369 -113 6.8 ATTGACCGACCGGTCGGTTTAT
Ralstonia pickettii 12J Rpic_4567 -96 6.3 ATTGACCGACCGGTCGGACGGT
Ralstonia solanacearum GMI1000 RSp0604 -97 6.3 ATTGACCGACCGGTCGGACGAT
© 2009-2020 RegPrecise