Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PaaR regulog to Cupriavidus taiwanensis

Reference regulog properties
Source regulog: PaaR - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Betaproteobacteria
Propagated regulon:
Target genome Cupriavidus taiwanensis
Orthologous TF(s) RALTA_A2979
Regulated genes 3
Built upon 18 sites [see more]
Predicted regulatory interactions in Cupriavidus taiwanensis
Locus tag Position Score Sequence
Position: -31
Score: 6.6
Sequence: ATTAACCGACCGATCGGTTGGT
Locus tag: RALTA_A0085
RALTA_A0085 -31 6.6 ATTAACCGACCGATCGGTTGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaG
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17)
Cupriavidus taiwanensis RALTA_A0085 -31 6.6 ATTAACCGACCGATCGGTTGGT
Ralstonia eutropha H16 H16_A0142 -72 6.2 ATTAACCGACCGATCGGTTGGC
Ralstonia eutropha JMP134 Reut_A0110 -73 6.4 ATTTACCGACCGGCCGGTTGGT
Position: -89
Score: 5.7
Sequence: GCCGACCGACTGGTCGGTTTAT
Locus tag: RALTA_A2763
RALTA_A2763 -89 5.7 GCCGACCGACTGGTCGGTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaF
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17)
Cupriavidus taiwanensis RALTA_A2763 -89 5.7 GCCGACCGACTGGTCGGTTTAT
Ralstonia eutropha H16 H16_A3311 -90 5.7 GCCGACCGACTGGTCGGTTTAT
Ralstonia eutropha JMP134 Reut_A3015 -61 6.2 ACCGACCGATCGGTCGGTTAAT
Ralstonia metallidurans CH34 Rmet_3163 -100 5.8 GCCGACCGACTGGTCGGTTAAT
Ralstonia pickettii 12J Rpic_3115 -52 6.2 GCCGACCAACCGGTCGGTTAAT
Ralstonia solanacearum GMI1000 RSc2873 -48 6.2 GCCGACCAACCGGTCGGTTAAT
Position: -83
Score: 6.2
Sequence: ATTGACCGACCGGTCGGCTTAT
Locus tag: RALTA_A2973
RALTA_A2973 -83 6.2 ATTGACCGACCGGTCGGCTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: Phenylacetate-CoA oxygenase, PaaA subunit
Cupriavidus taiwanensis RALTA_A2973 -83 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia eutropha H16 H16_A3520 -79 5.7 ATTGACCGACCGGTCGGCATAT
Ralstonia eutropha JMP134 Reut_A3206 -95 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia metallidurans CH34 Rmet_3369 -113 6.8 ATTGACCGACCGGTCGGTTTAT
Ralstonia pickettii 12J Rpic_4567 -96 6.3 ATTGACCGACCGGTCGGACGGT
Ralstonia solanacearum GMI1000 RSp0604 -97 6.3 ATTGACCGACCGGTCGGACGAT
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