Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PaaR regulog to Burkholderia sp. CCGE1002

Reference regulog properties
Source regulog: PaaR - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Betaproteobacteria
Propagated regulon:
Target genome Burkholderia sp. CCGE1002
Orthologous TF(s) BC1002_2921
Regulated genes 3
Built upon 18 sites [see more]
Predicted regulatory interactions in Burkholderia sp. CCGE1002
Locus tag Position Score Sequence
Position: -91
Score: 6.5
Sequence: ATTGACCGACCGGTTGGTTGGG
Locus tag: BC1002_2744
BC1002_2744 -91 6.5 ATTGACCGACCGGTTGGTTGGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaF2
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17)
Ralstonia metallidurans CH34 Rmet_3162 -149 6.1 ATTAACCGACCAGTCGGTCGGC
Ralstonia pickettii 12J Rpic_3114 -53 6.5 ATTAACCGACCGGTTGGTCGGC
Ralstonia solanacearum GMI1000 RSc2872 -53 6.5 ATTAACCGACCGGTTGGTCGGC
Position: -66
Score: 7.1
Sequence: ATTAACCGACCGGTCGGTTGAT
Locus tag: BC1002_2915
BC1002_2915 -66 7.1 ATTAACCGACCGGTCGGTTGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: Phenylacetate-CoA oxygenase, PaaA subunit
Cupriavidus taiwanensis RALTA_A2973 -83 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia eutropha H16 H16_A3520 -79 5.7 ATTGACCGACCGGTCGGCATAT
Ralstonia eutropha JMP134 Reut_A3206 -95 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia metallidurans CH34 Rmet_3369 -113 6.8 ATTGACCGACCGGTCGGTTTAT
Ralstonia pickettii 12J Rpic_4567 -96 6.3 ATTGACCGACCGGTCGGACGGT
Ralstonia solanacearum GMI1000 RSp0604 -97 6.3 ATTGACCGACCGGTCGGACGAT
Position: -62
Score: 6.4
Sequence: ATTGACCGGCCGGTCGGTTAAT
Locus tag: BC1002_6728
BC1002_6728 -62 6.4 ATTGACCGGCCGGTCGGTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: Phenylacetate-CoA oxygenase, PaaA subunit
Cupriavidus taiwanensis RALTA_A2973 -83 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia eutropha H16 H16_A3520 -79 5.7 ATTGACCGACCGGTCGGCATAT
Ralstonia eutropha JMP134 Reut_A3206 -95 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia metallidurans CH34 Rmet_3369 -113 6.8 ATTGACCGACCGGTCGGTTTAT
Ralstonia pickettii 12J Rpic_4567 -96 6.3 ATTGACCGACCGGTCGGACGGT
Ralstonia solanacearum GMI1000 RSp0604 -97 6.3 ATTGACCGACCGGTCGGACGAT
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