Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PaaR regulog to Burkholderia oklahomensis C6786

Reference regulog properties
Source regulog: PaaR - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Betaproteobacteria
Propagated regulon:
Target genome Burkholderia oklahomensis C6786
Orthologous TF(s) BoklC_010100017203
Regulated genes 2
Built upon 18 sites [see more]
Predicted regulatory interactions in Burkholderia oklahomensis C6786
Locus tag Position Score Sequence
Position: -88
Score: 6.6
Locus tag: BoklC_010100016094
BoklC_010100016094 -88 6.6 ATTAACCGACCGGTTGGTCGGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaF2
Ortholog function: Enoyl-CoA hydratase (EC
Ralstonia metallidurans CH34 Rmet_3162 -149 6.1 ATTAACCGACCAGTCGGTCGGC
Ralstonia pickettii 12J Rpic_3114 -53 6.5 ATTAACCGACCGGTTGGTCGGC
Ralstonia solanacearum GMI1000 RSc2872 -53 6.5 ATTAACCGACCGGTTGGTCGGC
Position: -62
Score: 6.7
Locus tag: BoklC_010100017173
BoklC_010100017173 -62 6.7 ATTAACCGACCGGTCGGTTGGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: Phenylacetate-CoA oxygenase, PaaA subunit
Cupriavidus taiwanensis RALTA_A2973 -83 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia eutropha H16 H16_A3520 -79 5.7 ATTGACCGACCGGTCGGCATAT
Ralstonia eutropha JMP134 Reut_A3206 -95 6.2 ATTGACCGACCGGTCGGCTTAT
Ralstonia metallidurans CH34 Rmet_3369 -113 6.8 ATTGACCGACCGGTCGGTTTAT
Ralstonia pickettii 12J Rpic_4567 -96 6.3 ATTGACCGACCGGTCGGACGGT
Ralstonia solanacearum GMI1000 RSp0604 -97 6.3 ATTGACCGACCGGTCGGACGAT