Propagation of CodY regulog to Bacillus pumilus SAFR-032

Reference regulog properties
Source regulog:	CodY - Bacillales
Regulator type:	Transcription factor
Regulator family:	CodY
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Guanosine triphosphate; Branched-chain amino acids
Phylum:	Firmicutes
Propagated regulon:
Target genome	Bacillus pumilus SAFR-032
Orthologous TF(s)	BPUM_1515
Regulated genes	68

Built upon 445 sites [see more]

Predicted regulatory interactions in *Bacillus pumilus SAFR-032*
	Locus tag	Position	Score	Sequence
Position: -131 Score: 4.5 Sequence: TATTTTCTAACTATT Locus tag: BPUM_0158
	BPUM_0158	-131	4.5	TATTTTCTAACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: murQ
Ortholog function: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
Bacillus subtilis subsp. subtilis str. 168	BSU01700	-95	4.4	AAATTTCAAAAATTT
		-48	4.6	AATATACTGAATATT
Bacillus pumilus SAFR-032	BPUM_0158	-131	4.5	TATTTTCTAACTATT
Bacillus licheniformis DSM 13	BLi00191	-53	4.8	AATATACTGAAAATT

Position: -116 Score: 5 Sequence: AATTTTCAGAATAAT Locus tag: BPUM_0275
	BPUM_0275	-116	5	AATTTTCAGAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amhX
Ortholog function: Amidohydrolase amhX (EC 3.5.1.-)
Bacillus subtilis subsp. subtilis str. 168	BSU03010	-116	4.3	ATTATTCTGAATAGT
Bacillus amyloliquefaciens FZB42	RBAM_003250	-104	4.6	ACTATTCAGAAAATA
Bacillus pumilus SAFR-032	BPUM_0275	-116	5	AATTTTCAGAATAAT

Position: -52 Score: 5 Sequence: ATTATTCTGAAAATT Locus tag: BPUM_0276
	BPUM_0276	-52	5	ATTATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycgA
Ortholog function: Putative integral inner membrane protein
Bacillus amyloliquefaciens FZB42	RBAM_003260	-182	4.6	TATTTTCTGAATAGT
Bacillus pumilus SAFR-032	BPUM_0276	-52	5	ATTATTCTGAAAATT

Position: -187 Score: 4.5 Sequence: AATTTTAAATAAATT Locus tag: BPUM_0343
	BPUM_0343	-187	4.5	AATTTTAAATAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclF
Ortholog function: POT family proton (H+)-dependent oligopeptide transporter
Bacillus pumilus SAFR-032	BPUM_0343	-187	4.5	AATTTTAAATAAATT
Geobacillus kaustophilus HTA426	GK2020	-118	4.4	TTTTTTCTTAATATT
		-68	4.4	ATTTTTTTGACAATA

Position: -252 Score: 5 Sequence: AATTTTCTAAAAATA Position: -230 Score: 4.4 Sequence: AATAGTATGAAAATA Locus tag: BPUM_0421
	BPUM_0421	-252	5	AATTTTCTAAAAATA
		-230	4.4	AATAGTATGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltO
Ortholog function: Proton/sodium-glutamate symport protein
Bacillus pumilus SAFR-032	BPUM_0421	-252	5	AATTTTCTAAAAATA
		-230	4.4	AATAGTATGAAAATA
Anoxybacillus flavithermus WK1	Aflv_1459	-140	4.9	ATTTTTCTGACAATT
Bacillus cereus ATCC 14579	BC1389	-88	4.6	AAAATTCAGAAAATA
Bacillus halodurans C-125	BH3820	-258	4.4	TATTTTTTGAAAAAA
Bacillus clausii KSM-K16	ABC3908	-77	4.3	AATTTTTAATAAAAT
Oceanobacillus iheyensis HTE831	OB0021	-36	4.9	AATTTTCTGAAAAAA

Position: -44 Score: 4.5 Sequence: AAAATTCTTAAAATT Locus tag: BPUM_0501
	BPUM_0501	-44	4.5	AAAATTCTTAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltP
Ortholog function: Proton/glutamate symport protein @ Proton/aspartate symport protein
Bacillus amyloliquefaciens FZB42	RBAM_002750	-229	4.4	AATTATCAAAATTTT
Bacillus pumilus SAFR-032	BPUM_0501	-44	4.5	AAAATTCTTAAAATT

Position: -36 Score: 5 Sequence: AATTTTTAGAAAATA Locus tag: BPUM_0503
	BPUM_0503	-36	5	AATTTTTAGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yaaC
Ortholog function: Conserved hypothetical protein
Bacillus pumilus SAFR-032	BPUM_0503	-36	5	AATTTTTAGAAAATA
Bacillus licheniformis DSM 13	BLi00013	-36	5	AATTTTTAGAAAATA
Bacillus cereus ATCC 14579	BC0012	-30	4.7	AATTTTTAGACAATA

Position: -231 Score: 4.5 Sequence: AAATTTCAGAATAAT Position: -42 Score: 4.2 Sequence: AAAATTTAAAATATT Position: -33 Score: 4.3 Sequence: AATATTCTAAAAACA Locus tag: BPUM_0543
	BPUM_0543	-231	4.5	AAATTTCAGAATAAT
		-42	4.2	AAAATTTAAAATATT
		-33	4.3	AATATTCTAAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabP
Ortholog function: Gamma-aminobutyrate (GABA) permease
Bacillus subtilis subsp. subtilis str. 168	BSU06310	-48	4.7	AATTATCATAATATT
Bacillus amyloliquefaciens FZB42	RBAM_006710	-160	4.3	AAATAACAGAAAATT
		-45	4	ACTTGTCGGAATATT
Bacillus pumilus SAFR-032	BPUM_0543	-231	4.5	AAATTTCAGAATAAT
		-33	4.3	AATATTCTAAAAACA

Position: -231 Score: 4.9 Sequence: ATTTATCAGAAAATT Locus tag: BPUM_0643
	BPUM_0643	-231	4.9	ATTTATCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: opuE
Ortholog function: Sodium/proline symporter
Bacillus subtilis subsp. subtilis str. 168	BSU06660	-256	5	ATTTTTCTGAATATT
Bacillus amyloliquefaciens FZB42	RBAM_007060	-273	4.5	ATATGTCAGAAAATT
Bacillus pumilus SAFR-032	BPUM_0643	-231	4.9	ATTTATCAGAAAATT
Bacillus licheniformis DSM 13	BLi00728	-289	5.1	AATATTCAGAATATT
Bacillus cereus ATCC 14579	BC3644	-214	5.3	AATTTTCTGAATATT

Position: -182 Score: 4.9 Sequence: AATTTTCTGATAAAT Locus tag: BPUM_0644
	BPUM_0644	-182	4.9	AATTTTCTGATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gatC
Ortholog function: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)
Bacillus subtilis subsp. subtilis str. 168	BSU06670	-172	5	AATATTCAGAAAAAT
Bacillus amyloliquefaciens FZB42	RBAM_007070	-163	4.5	AATTTTCTGACATAT
Bacillus pumilus SAFR-032	BPUM_0644	-182	4.9	AATTTTCTGATAAAT
Bacillus licheniformis DSM 13	BLi00730	-167	5.1	AATATTCTGAATATT

Position: -80 Score: 4.7 Sequence: AATTTTCTGAAATAT Locus tag: BPUM_0697
	BPUM_0697	-80	4.7	AATTTTCTGAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfmB
Ortholog function: Hypothetical protein
Bacillus pumilus SAFR-032	BPUM_0697	-80	4.7	AATTTTCTGAAATAT
Bacillus licheniformis DSM 13	BLi00778	-83	4.6	AATTTTCAGACAAAA

Position: -153 Score: 5 Sequence: AATAATCTGAAAATT Locus tag: BPUM_0905
	BPUM_0905	-153	5	AATAATCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cueR
Ortholog function: Transcriptional regulator, MerR family
Bacillus subtilis subsp. subtilis str. 168	BSU09560	-139	4.4	AAAAATTTGAAAATT
Bacillus pumilus SAFR-032	BPUM_0905	-153	5	AATAATCTGAAAATT
Bacillus licheniformis DSM 13	BLi01027	-112	4.5	AATATTTAGATAAAT

Position: -196 Score: 5 Sequence: AATTTTCAGATTATT Locus tag: BPUM_0906
	BPUM_0906	-196	5	AATTTTCAGATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhdT
Ortholog function: Hemolysins and related proteins containing CBS domains
Bacillus subtilis subsp. subtilis str. 168	BSU09590	-200	4.4	AAAAGTCTAAAAATT
Bacillus pumilus SAFR-032	BPUM_0906	-196	5	AATTTTCAGATTATT
Bacillus licheniformis DSM 13	BLi01028	-217	4.5	ATTTATCTAAATATT

Position: -273 Score: 4.6 Sequence: TTTTTTCTGAAAAAT Locus tag: BPUM_0965
	BPUM_0965	-273	4.6	TTTTTTCTGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltT
Ortholog function: Proton/sodium-glutamate symport protein
Bacillus pumilus SAFR-032	BPUM_0965	-273	4.6	TTTTTTCTGAAAAAT
		-140	4.4	TTTTTTCAAACAATT
Bacillus licheniformis DSM 13	BLi01100	-124	4.6	AATTTTCAATATATT

Position: -222 Score: 5 Sequence: AATTTTTAGACAATT Locus tag: BPUM_0978
	BPUM_0978	-222	5	AATTTTTAGACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: comK
Ortholog function: Competence transcription factor
Bacillus subtilis subsp. subtilis str. 168	BSU10420	-225	4.5	AATTTTTAGACAACT
Bacillus amyloliquefaciens FZB42	RBAM_010600	-88	4.2	TATATTCAAAAAAAA
Bacillus pumilus SAFR-032	BPUM_0978	-222	5	AATTTTTAGACAATT
Bacillus licheniformis DSM 13	BLi01119	-205	5.3	AATTTTTAGAAAATT
Oceanobacillus iheyensis HTE831	OB1177	-94	4.5	TTTATTCTAAAAATT

Position: -38 Score: 4.4 Sequence: AATATACAGAAAAGT Locus tag: BPUM_1071
	BPUM_1071	-38	4.4	AATATACAGAAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppB
Ortholog function: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Bacillus pumilus SAFR-032	BPUM_1071	-38	4.4	AATATACAGAAAAGT
Anoxybacillus flavithermus WK1	Aflv_2132	-102	4.6	AAATGTTAGAAAATT
Bacillus cereus ATCC 14579	BC1180	-65	4.4	TATTTTAAAAAAATA

Position: -140 Score: 4.4 Sequence: AATTTTCTGTATTTT Locus tag: BPUM_1118
	BPUM_1118	-140	4.4	AATTTTCTGTATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycjH
Ortholog function: Putative acetyl esterase YjcH (EC 3.1.1.-)
Bacillus subtilis subsp. subtilis str. 168	BSU11860	-73	4.6	AAATTTCTAATAATT
Bacillus amyloliquefaciens FZB42	RBAM_011920	-70	4.6	AAATTTCTAATAATT
Bacillus pumilus SAFR-032	BPUM_1118	-140	4.4	AATTTTCTGTATTTT
Geobacillus kaustophilus HTA426	GK0865	-172	4.5	AATTTTTTTAAATTT

Position: -297 Score: 4.4 Sequence: AAAATACAGAAAATT Position: -287 Score: 4.1 Sequence: AAATTTCAATTAATT Locus tag: BPUM_1119
	BPUM_1119	-297	4.4	AAAATACAGAAAATT
		-287	4.1	AAATTTCAATTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168	BSU11870	-297	4.6	AATTATTAGAAATTT
		-214	4.3	AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_011930	-314	4.6	AATTATTAGAAATTT
Bacillus pumilus SAFR-032	BPUM_1119	-297	4.4	AAAATACAGAAAATT
		-287	4.1	AAATTTCAATTAATT
Bacillus licheniformis DSM 13	BLi01289	-164	4	AACAATCAGAATATT
Anoxybacillus flavithermus WK1	Aflv_2067	-228	4.4	ATTTTTCGGAAAATA
		-200	4.6	AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426	GK0866	-341	4.5	AAATTTAAAAAAATT
Bacillus cereus ATCC 14579	BC4253	-344	4.4	AATTTTTTAATAAAT
Paenibacillus sp. JDR-2	Pjdr2_4798	-6	4.4	AACTTTATGAAAATT

Position: -55 Score: 5 Sequence: ATTTTTTAGAAAATT Locus tag: BPUM_1184
	BPUM_1184	-55	5	ATTTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: D-aminopeptidase (EC 3.4.11.-)
Bacillus subtilis subsp. subtilis str. 168	BSU12920	-43	4.5	ATTTGTTAGAATATT
Bacillus amyloliquefaciens FZB42	RBAM_012770	-58	4.5	ATTTGTTAGAATATT
Bacillus pumilus SAFR-032	BPUM_1184	-55	5	ATTTTTTAGAAAATT
Bacillus licheniformis DSM 13	BLi01392	-61	4.5	ATTTGTTAGAATATT
Oceanobacillus iheyensis HTE831	OB2971	-96	4.5	AATATTCAGATTAAT
		-41	4.5	AATTAATAGAAAATT

Position: -136 Score: 4.4 Sequence: TTTTTTTAGAAAAAT Locus tag: BPUM_1603
	BPUM_1603	-136	4.4	TTTTTTTAGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdh
Ortholog function: L-threonine 3-dehydrogenase (EC 1.1.1.103)
Bacillus amyloliquefaciens FZB42	RBAM_016830	-137	4.5	AATATTCAAAAAAAA
Bacillus pumilus SAFR-032	BPUM_1603	-136	4.4	TTTTTTTAGAAAAAT

Position: -103 Score: 4.6 Sequence: AAATTTCAGAAATTT Locus tag: BPUM_1672
	BPUM_1672	-103	4.6	AAATTTCAGAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutA
Ortholog function: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
Bacillus pumilus SAFR-032	BPUM_1672	-103	4.6	AAATTTCAGAAATTT
Bacillus cereus ATCC 14579	BC1303	-165	4.5	AATCTTTTAAAAATT
		-149	4.6	AATTTTCTGATAAAA
Bacillus halodurans C-125	BH1832	-123	4.4	ATTTATCAGTAAATT

Position: -183 Score: 4.6 Sequence: AATTCTCAGAAAAAT Position: -152 Score: 4.7 Sequence: AATTTTCTCACAATT Locus tag: BPUM_1698
	BPUM_1698	-183	4.6	AATTCTCAGAAAAAT
		-152	4.7	AATTTTCTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sspO
Ortholog function: Small, acid-soluble spore protein O
Bacillus subtilis subsp. subtilis str. 168	BSU17990	-170	4.7	AATTTTCTCACAATT
Bacillus amyloliquefaciens FZB42	RBAM_017790	-169	4.7	AATTTTCTCACAATT
Bacillus pumilus SAFR-032	BPUM_1698	-183	4.6	AATTCTCAGAAAAAT
		-152	4.7	AATTTTCTCACAATT
Bacillus licheniformis DSM 13	BLi02046	-171	4.7	AATTTTCTCACAATT
Oceanobacillus iheyensis HTE831	OB0266	-227	4.5	AATATTCTGTTAATT

Position: -83 Score: 4.7 Sequence: AATTGTGAGAAAATT Locus tag: BPUM_1699
	BPUM_1699	-83	4.7	AATTGTGAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citB
Ortholog function: Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Bacillus subtilis subsp. subtilis str. 168	BSU18000	-72	4.7	AATTGTGAGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_017800	-77	4.7	AATTGTGAGAAAATT
Bacillus pumilus SAFR-032	BPUM_1699	-83	4.7	AATTGTGAGAAAATT
		-52	4.6	ATTTTTCTGAGAATT
Bacillus licheniformis DSM 13	BLi02047	-78	4.7	AATTGTGAGAAAATT

Position: -62 Score: 4.9 Sequence: TTTTTTCAGAAAATT Locus tag: BPUM_1860
	BPUM_1860	-62	4.9	TTTTTTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yocS
Ortholog function: Sodium-dependent transporter
Bacillus pumilus SAFR-032	BPUM_1860	-62	4.9	TTTTTTCAGAAAATT
Bacillus halodurans C-125	BH0858	26	4.4	ATTTTTCAGTAAATA
Oceanobacillus iheyensis HTE831	OB0994	-56	4.4	TATTATCAGATTATT

Position: -27 Score: 4.4 Sequence: AAATTACAAAAAATT Locus tag: BPUM_1877
	BPUM_1877	-27	4.4	AAATTACAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yoyD
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168	BSU19579	-80	4.4	TTTTTTCTAATAATT
Bacillus pumilus SAFR-032	BPUM_1877	-27	4.4	AAATTACAAAAAATT
Bacillus licheniformis DSM 13	BLi02277	-81	4.4	TTTTTTCTAATAATT

Position: -64 Score: 4.8 Sequence: TATTTTTTGAATATT Locus tag: BPUM_1911
	BPUM_1911	-64	4.8	TATTTTTTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvA
Ortholog function: Threonine dehydratase biosynthetic (EC 4.3.1.19)
Bacillus subtilis subsp. subtilis str. 168	BSU21770	-68	4.8	TATTTTTTGAATATT
Bacillus amyloliquefaciens FZB42	RBAM_019920	-75	4.4	AATTGTCTTATTATT
		-67	4.5	TATTATTTGAATATT
Bacillus pumilus SAFR-032	BPUM_1911	-64	4.8	TATTTTTTGAATATT
Bacillus licheniformis DSM 13	BLi02315	-97	4.6	AATATTCTGTAAATA
Anoxybacillus flavithermus WK1	Aflv_1453	-99	5	ATTTTTTAGAAAATT

Position: -229 Score: 4.6 Sequence: ATTATTTTGAATATT Position: -83 Score: 4.5 Sequence: AATAAACAGAAAATT Locus tag: BPUM_1922
	BPUM_1922	-229	4.6	ATTATTTTGAATATT
		-83	4.5	AATAAACAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvD
Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Bacillus subtilis subsp. subtilis str. 168	BSU21870	-64	4.5	AATAAACTGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_020010	-56	4.5	AATAAACTGAAAATT
Bacillus pumilus SAFR-032	BPUM_1922	-83	4.5	AATAAACAGAAAATT
Bacillus licheniformis DSM 13	BLi02324	-51	4.8	AATATTCAGAATATA
Bacillus halodurans C-125	BH3062	-217	4.3	AATAGTCAAATTATT
		-111	4.5	TATTTTTTGACTATT

Position: -45 Score: 4.5 Sequence: AATTATCAGATATTT Locus tag: BPUM_2039
	BPUM_2039	-45	4.5	AATTATCAGATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Bacillus subtilis subsp. subtilis str. 168	BSU23070	-44	4.5	AATTATCAGATATTT
Bacillus amyloliquefaciens FZB42	RBAM_021220	-44	4.5	AATTATCAGATATTT
Bacillus pumilus SAFR-032	BPUM_2039	-45	4.5	AATTATCAGATATTT
Bacillus licheniformis DSM 13	BLi02446	-43	4.5	AATTATCAGATATTT
Anoxybacillus flavithermus WK1	Aflv_1055	-47	4.8	AATTATCAGAAATTT
Geobacillus kaustophilus HTA426	GK2247	-86	4.8	AATTATCAGAAATTT

Position: -111 Score: 4.4 Sequence: ATTATTCGGAAAATT Locus tag: BPUM_2154
	BPUM_2154	-111	4.4	ATTATTCGGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spo0A
Ortholog function: Stage 0 sporulation two-component response regulator (Spo0A)
Bacillus pumilus SAFR-032	BPUM_2154	-111	4.4	ATTATTCGGAAAATT
Anoxybacillus flavithermus WK1	Aflv_0953	-120	4.6	TATTTTATGAAAAAT
Geobacillus kaustophilus HTA426	GK2387	-96	4.7	TATTTTTTGAAAAAT
Bacillus cereus ATCC 14579	BC4170	-84	4.7	AATTTTCACACAATT
Bacillus halodurans C-125	BH2773	-89	5	AATTTTTTTAAAATT

Position: -166 Score: 4.7 Sequence: AATTGTCTAATAATT Locus tag: BPUM_2473
	BPUM_2473	-166	4.7	AATTGTCTAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus pumilus SAFR-032	BPUM_2473	-166	4.7	AATTGTCTAATAATT
		-54	4.6	AAGTGTCTGAAAATT
Bacillus licheniformis DSM 13	BLi02962	-192	4.7	AATTGTCTAATAATT
Anoxybacillus flavithermus WK1	Aflv_0590	-136	4.8	AATAATCAAAAAATT
		-79	4.7	AATTTTCAAATAAAT
Bacillus cereus ATCC 14579	BC1396	-167	4.4	AATTTTTTGACTTTT
		-88	5.3	AATTTTCTAAAAATT

Position: -161 Score: 4.5 Sequence: AAATTTCGGAAAATT Position: -94 Score: 4.5 Sequence: AATTGTCAATAAATT Locus tag: BPUM_2503
	BPUM_2503	-161	4.5	AAATTTCGGAAAATT
		-94	4.5	AATTGTCAATAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase, cytochrome b subunit
Bacillus amyloliquefaciens FZB42	RBAM_025520	-98	4.5	AATTGTCAATAAATT
Bacillus pumilus SAFR-032	BPUM_2503	-161	4.5	AAATTTCGGAAAATT
		-94	4.5	AATTGTCAATAAATT
Bacillus licheniformis DSM 13	BLi02994	-184	4.5	AATTTTCAAAAATAT
		-165	4.9	AAATTTTAGAAAATT

Position: -201 Score: 4.5 Sequence: AATTTATTGACAATT Position: -134 Score: 4.5 Sequence: AATTTTCCGAAATTT Locus tag: BPUM_2504
	BPUM_2504	-201	4.5	AATTTATTGACAATT
		-134	4.5	AATTTTCCGAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yslB
Ortholog function: Predicted hydrocarbon binding protein (V4R domain)
Bacillus amyloliquefaciens FZB42	RBAM_025530	-213	4.5	AATTTATTGACAATT
Bacillus pumilus SAFR-032	BPUM_2504	-201	4.5	AATTTATTGACAATT
		-134	4.5	AATTTTCCGAAATTT
Bacillus licheniformis DSM 13	BLi02995	-151	4.9	AATTTTCTAAAATTT
		-132	4.5	ATATTTTTGAAAATT

Position: -206 Score: 4.7 Sequence: ATTATTCAGAAAATA Locus tag: BPUM_2579
	BPUM_2579	-206	4.7	ATTATTCAGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Bacillus subtilis subsp. subtilis str. 168	BSU29470	-182	4	atgTgTCtGAaAata
Bacillus amyloliquefaciens FZB42	RBAM_026400	-172	4.6	ATTTATCAGAAAATA
Bacillus pumilus SAFR-032	BPUM_2579	-206	4.7	ATTATTCAGAAAATA
Bacillus licheniformis DSM 13	BLi03086	-194	4.8	TATATTCAGAAAATA

Position: -158 Score: 4.6 Sequence: AATAGTTTGAATATT Locus tag: BPUM_2600
	BPUM_2600	-158	4.6	AATAGTTTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcI
Ortholog function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Bacillus pumilus SAFR-032	BPUM_2600	-158	4.6	AATAGTTTGAATATT
Bacillus cereus ATCC 14579	BC4645	-58	4.7	AATTAACTGAAAATT
Oceanobacillus iheyensis HTE831	OB2643	-96	4.5	TATAATCAGAATATT

Position: -44 Score: 4.5 Sequence: AATTAACAGAATATT Locus tag: BPUM_2605
	BPUM_2605	-44	4.5	AATTAACAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: braB
Ortholog function: Branched-chain amino acid transport system carrier protein
Bacillus subtilis subsp. subtilis str. 168	BSU29600	-59	4.7	TATTATCTGACAATT
		-44	4.6	AATTGACAGAATATT
Bacillus amyloliquefaciens FZB42	RBAM_026530	-56	4.7	TATTATCTGACAATT
		-41	4.6	AATTGACAGAATATT
Bacillus pumilus SAFR-032	BPUM_2605	-44	4.5	AATTAACAGAATATT

Position: -77 Score: 4.6 Sequence: AGTTTTTTAAAAATT Locus tag: BPUM_2616
	BPUM_2616	-77	4.6	AGTTTTTTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Bacillus subtilis subsp. subtilis str. 168	BSU29680	-78	4.6	TATATTTTAAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_026800	-73	4.6	TATATTTTAAAAATT
Bacillus pumilus SAFR-032	BPUM_2616	-77	4.6	AGTTTTTTAAAAATT
Bacillus licheniformis DSM 13	BLi03119	-74	4.8	TATTTTTTAAAAATT
Anoxybacillus flavithermus WK1	Aflv_0462	-77	5.1	AATTTTTTAAAAATT
Geobacillus kaustophilus HTA426	GK2806	-102	4.4	AAATTTCAAAAAAGT
		-77	4.9	AATATTTTAAAAATT
Bacillus cereus ATCC 14579	BC4659	-69	4.8	AATATACTGAAAATT

Position: -93 Score: 4.6 Sequence: AATTTTTAAAAAACT Locus tag: BPUM_2617
	BPUM_2617	-93	4.6	AATTTTTAAAAAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Bacillus subtilis subsp. subtilis str. 168	BSU29690	-97	4.6	AATTTTTAAAATATA
Bacillus amyloliquefaciens FZB42	RBAM_026810	-100	4.6	AATTTTTAAAATATA
Bacillus pumilus SAFR-032	BPUM_2617	-93	4.6	AATTTTTAAAAAACT
Bacillus licheniformis DSM 13	BLi03120	-96	4.8	AATTTTTAAAAAATA
Anoxybacillus flavithermus WK1	Aflv_0461	-101	5.1	AATTTTTAAAAAATT
Geobacillus kaustophilus HTA426	GK2807	-112	4.9	AATTTTTAAAATATT
		-87	4.4	ACTTTTTTGAAATTT
Bacillus cereus ATCC 14579	BC4660	-110	4.8	AATTTTCAGTATATT
Oceanobacillus iheyensis HTE831	OB2221	-85	4.6	AAATTTCAAAAAATA

Position: -233 Score: 4.5 Sequence: ATTTTTTTAAAAATA Position: -39 Score: 4.4 Sequence: ACTTTTCTGAAACTT Locus tag: BPUM_2823
	BPUM_2823	-233	4.5	ATTTTTTTAAAAATA
		-39	4.4	ACTTTTCTGAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupN
Ortholog function: Guanosine ABC transport system, substrate-binding component
Bacillus subtilis subsp. subtilis str. 168	BSU31540	-102	4.9	TATTATCAGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_028640	-244	4.5	TATTTTTTAAAAAAT
		-243	4.5	ATTTTTTAAAAAATA
Bacillus pumilus SAFR-032	BPUM_2823	-233	4.5	ATTTTTTTAAAAATA

Position: -185 Score: 4.8 Sequence: AATATTTTGAAAATA Locus tag: BPUM_2888
	BPUM_2888	-185	4.8	AATATTTTGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hom
Ortholog function: Homoserine dehydrogenase (EC 1.1.1.3)
Bacillus subtilis subsp. subtilis str. 168	BSU32260	-183	4.5	AATAATTAGAAAATA
Bacillus amyloliquefaciens FZB42	RBAM_029370	-185	4.8	AATATTTAGAAAATA
Bacillus pumilus SAFR-032	BPUM_2888	-185	4.8	AATATTTTGAAAATA
Anoxybacillus flavithermus WK1	Aflv_2414	-88	4.7	TTTTTTTAGAAAATT

Position: -43 Score: 5 Sequence: AATTTTCTGAATATA Locus tag: BPUM_3043
	BPUM_3043	-43	5	AATTTTCTGAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: opuCA
Ortholog function: Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA
Bacillus subtilis subsp. subtilis str. 168	BSU33830	-42	5	ACTTTTCAGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_031100	-41	4.7	ACTTTTCAGAAAAAT
Bacillus pumilus SAFR-032	BPUM_3043	-43	5	AATTTTCTGAATATA

Position: -109 Score: 4.6 Sequence: GATTTTTTGAAAATT Locus tag: BPUM_3062
	BPUM_3062	-109	4.6	GATTTTTTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutR
Ortholog function: Transcriptional regulator of L-lactate utilization, GntR family
Bacillus pumilus SAFR-032	BPUM_3062	-109	4.6	GATTTTTTGAAAATT
Anoxybacillus flavithermus WK1	Aflv_2010	-60	4.4	AATATTTAAAAATTT
Bacillus halodurans C-125	BH1835	-123	4.4	ATTTATCAGTAAATT

Position: -43 Score: 4.6 Sequence: TATTTTTTGAAAAGT Locus tag: BPUM_3302
	BPUM_3302	-43	4.6	TATTTTTTGAAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spoIIQ
Ortholog function: Stage II sporulation protein related to metaloproteases (SpoIIQ)
Bacillus pumilus SAFR-032	BPUM_3302	-43	4.6	TATTTTTTGAAAAGT

Position: -226 Score: 4.4 Sequence: AATTGTCAGATTAAT Position: -35 Score: 4.3 Sequence: AATTTTCAAATAATC Locus tag: BPUM_3500
	BPUM_3500	-226	4.4	AATTGTCAGATTAAT
		-35	4.3	AATTTTCAAATAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybgE
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus subtilis subsp. subtilis str. 168	BSU02390	-118	4.9	AATATTCTGAAATTT
		-38	4.6	AATATTTAAACAATT
Bacillus amyloliquefaciens FZB42	RBAM_002760	-152	4.4	AAAATTTTGATAATT
Bacillus amyloliquefaciens FZB42	RBAM_035750	-48	4.3	TATTTTCAAATAAGT
Bacillus pumilus SAFR-032	BPUM_3500	-226	4.4	AATTGTCAGATTAAT

Position: -227 Score: 4.4 Sequence: TTTATTAAGAAAATT Locus tag: BPUM_3562
	BPUM_3562	-227	4.4	TTTATTAAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metE2
Ortholog function: Methionine synthase II (cobalamin-independent)
Bacillus subtilis subsp. subtilis str. 168	BSU38950	-225	4.7	AATATTAAGATAATT
Bacillus amyloliquefaciens FZB42	RBAM_036120	-188	4.4	TTTATTCTGAAAAAT
Bacillus pumilus SAFR-032	BPUM_3562	-227	4.4	TTTATTAAGAAAATT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CodY regulog to Bacillus pumilus SAFR-032

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --