Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CymR regulog to Bacillus pumilus SAFR-032

Reference regulog properties
Source regulog: CymR - Bacillales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pumilus SAFR-032
Orthologous TF(s) BPUM_2393
Regulated genes 4
Built upon 65 sites [see more]
Predicted regulatory interactions in Bacillus pumilus SAFR-032
Locus tag Position Score Sequence
Position: -39
Score: 4.6
Sequence: TTAATACAATAAAATTACTCGGAGATA
Locus tag: BPUM_0057
BPUM_0057 -39 4.6 TTAATACAATAAAATTACTCGGAGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysK
Ortholog function: Cysteine synthase (EC 2.5.1.47)
Bacillus subtilis subsp. subtilis str. 168 BSU00730 -39 5.4 TAATACCAATACAAATAGTCGGAAATT
Bacillus amyloliquefaciens FZB42 RBAM_000840 -39 5.8 TAATACCAATAAATTTAGTCGGAAATT
Bacillus pumilus SAFR-032 BPUM_0057 -40 4.6 TtAaTaCaATaAAATTAcTcGGAgaTA
Bacillus licheniformis DSM 13 BLi00089 -38 5.6 TAATCCCAATAAAATTACTCGGAAATT
Anoxybacillus flavithermus WK1 Aflv_0065 -30 5 CAAATTCTATAAAAATACTCGGGATTA
Geobacillus kaustophilus HTA426 GK0065 -38 4.7 CAAAGTCGATAAAATTAATGGGGATTA
Bacillus cereus ATCC 14579 BC0075 -39 5.3 TAAAACCAATAAAAATACTCGGTGTTA
Bacillus halodurans C-125 BH0088 -39 5.2 GAAAACCAATAAATTTACTTGGGATTA
Bacillus clausii KSM-K16 ABC0109 -42 4.9 TAAAACCAATGAAGATACTAGGGATTG
Oceanobacillus iheyensis HTE831 OB0084 -41 6 TAAATCTTATAAAAATACTTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_0074 -44 5.7 AAAAACCAACTAAATTAGTCGGAATAA
Position: -84
Score: 5.5
Sequence: TAAAACCGATTAATTCAATCAGAAAAA
Locus tag: BPUM_0345
BPUM_0345 -84 5.5 TAAAACCGATTAATTCAATCAGAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxeK
Ortholog function: Putative monooxygenase
Bacillus subtilis subsp. subtilis str. 168 BSU39520 -82 5.6 TTATTCATATTAAACGACTAGGAATAT
Bacillus amyloliquefaciens FZB42 RBAM_003900 -85 6 TTATTCTTATAAAATTACTAGGAAATA
Bacillus pumilus SAFR-032 BPUM_0345 -84 5.5 TAAAACCGATTAATTCAATCAGAAAAA
Position: -89
Score: 5.5
Sequence: TAAATCCTATAAGTAAAGTGTGTTTTA
Locus tag: BPUM_2341
BPUM_2341 -89 5.5 TAAATCCTATAAGTAAAGTGTGTTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydbM
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Bacillus subtilis subsp. subtilis str. 168 BSU04520 -45 6.4 TAATACATATTAAATTTATCGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_004850 -82 6 TAATACTTATTAACTTTATCGGAATTA
Bacillus pumilus SAFR-032 BPUM_2341 -89 5.5 TAAATCCTATAAGTAAAGTGTGTTTTA
-61 4.9 TTATTCCGATTGGAAAAATCAGATATG
Bacillus licheniformis DSM 13 BLi00540 -45 5.9 TAATACTTATTAAATCTATCGGAATTT
Oceanobacillus iheyensis HTE831 OB0293 -45 5.5 TTATACCTATTGACTTACTAGGCATTA
Position: -51
Score: 5.4
Sequence: TAAAACATACTATACGCATAGGAATAA
Locus tag: BPUM_2363
BPUM_2363 -51 5.4 TAAAACATACTATACGCATAGGAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yrrT
Ortholog function: SAM-dependent methyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU27280 -49 6.1 TAATCCATAGTATACTTATAGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_024380 -49 5.9 TAATCCATACTATACTCATAGGAATTA
Bacillus pumilus SAFR-032 BPUM_2363 -51 5.4 TAAAACATACTATACGCATAGGAATAA
Bacillus licheniformis DSM 13 BLi02856 -54 5.8 TAAATCATACTATACTTATAGGAATTG
Anoxybacillus flavithermus WK1 Aflv_0758 -36 6.4 TAATTCATACTATACTTATAGGAATTA
Geobacillus kaustophilus HTA426 GK2543 -51 5.9 AAAAACATACTATATTTATAGGAATTA
Bacillus cereus ATCC 14579 BC4369 -29 5.1 TAAAACCGATAAGAAAAAGGGGAATTT
Paenibacillus sp. JDR-2 Pjdr2_5106 -105 5.2 TAAATCCGATTAATAAGGTTGGAAAAA
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