Propagation of RpoN regulog to Desulfovibrio salexigens DSM 2638
| Source regulog: | RpoN - Desulfovibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | Sigma54 |
| Regulation mode: | |
| Biological process: | Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism |
| Effector: | |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Desulfovibrio salexigens DSM 2638 |
| Orthologous TF(s) | Desal_2255 |
| Regulated genes | 51 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -54
Score: 5 Sequence: TTTGGCAAGGTCATTGCAT
Locus tag: Desal_0181
|
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| Desal_0181 | -54 | 5 | TTTGGCAAGGTCATTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU1032 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_2476 | -47 | 5 | CTTGGCAGGGACTTTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_1455 | -54 | 4.7 | GTTGGCAGACTTATTGCTA |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0763 | -59 | 4.6 | CTTGGCAGCATTTTTGCAT |
| Desulfovibrio magneticus RS-1 | DMR_39260 | -52 | 5.1 | TCTGGCAGGTTTTTTGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_0181 | -54 | 5 | TTTGGCAAGGTCATTGCAT |
| Desulfovibrio vulgaris Hildenborough | DVU1032 | -52 | 4.8 | GGTGGCGTGCTTCTTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0905 | -38 | 5.1 | CATGGCAGGGTTCTTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0887 | -53 | 5.3 | CTTGGCAAGCTTTTTGCTT |
|
Position: -92
Score: 5 Sequence: TTTGGCACACGTCTTGCCC
Locus tag: Desal_0284
|
||||
| Desal_0284 | -92 | 5 | TTTGGCACACGTCTTGCCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adh | ||||
| Ortholog function: alcohol dehydrogenase, iron-containing( EC:1.1.1.1 ) | ||||
| Desulfovibrio desulfuricans G20 | Dde_3523 | -98 | 5.1 | TTTGGCCCGTTCCTTGCCT |
| Desulfovibrio salexigens DSM 2638 | Desal_0284 | -92 | 5 | TTTGGCACACGTCTTGCCC |
|
Position: -20
Score: 4.8 Sequence: TATGGCATGTCTTATGCTA
Locus tag: Desal_0361
|
||||
| Desal_0361 | -20 | 4.8 | TATGGCATGTCTTATGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Desal_0361 | ||||
| Ortholog function: Formate dehydrogenase, alpha subunit | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_0361 | -20 | 4.8 | TATGGCATGTCTTATGCTA |
|
Position: -87
Score: 5.2 Sequence: TCTGGCCCGCCTTTTGCCT
Locus tag: Desal_0416
|
||||
| Desal_0416 | -87 | 5.2 | TCTGGCCCGCCTTTTGCCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0943 | ||||
| Ortholog function: membrane protein, putative | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1220 | -147 | 4.6 | TTTGGTTTGCTTTTTGCTT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2656 | -84 | 4.9 | TGTGGCAGGTCTTTTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_0876 | -116 | 5.2 | TCTGGCACGCTTCTTGTTA |
| Desulfovibrio salexigens DSM 2638 | Desal_0416 | -87 | 5.2 | TCTGGCCCGCCTTTTGCCT |
| Desulfovibrio vulgaris Hildenborough | DVU0943 | -73 | 5.2 | TCTGGCACGCTTCTTGTTC |
| Desulfovibrio vulgaris Hildenborough | DVU2133 | -73 | 4.9 | CATTGCACGCTTCTTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1363 | -85 | 5.3 | TTTGGCACGCCTCTTGATT |
|
Position: -69
Score: 5.1 Sequence: TTTGGCACACCACTTGCCT
Locus tag: Desal_0447
|
||||
| Desal_0447 | -69 | 5.1 | TTTGGCACACCACTTGCCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nifH | ||||
| Ortholog function: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_0834 | -81 | 5.1 | TTTGGCACGCCCGTTGCCC |
| Desulfovibrio magneticus RS-1 | DMR_20560 | -60 | 5 | ACTGGCATGACTCTTGCCT |
| Desulfovibrio salexigens DSM 2638 | Desal_0447 | -69 | 5.1 | TTTGGCACACCACTTGCCT |
| Desulfovibrio vulgaris Hildenborough | DVUA0015 | -326 | 4.7 | CATGGCACATCCCTTGCCC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2613 | -110 | 4.8 | ACTGGCACGGGGTTTGCCC |
|
Position: -58
Score: 4.5 Sequence: TTTGGCATCAATAATGCTT
Locus tag: Desal_0448
|
||||
| Desal_0448 | -58 | 4.5 | TTTGGCATCAATAATGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nifV | ||||
| Ortholog function: Pyruvate carboxyltransferase | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_0833 | -57 | 4.2 | CGTGGCATCGACCATGCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_0448 | -58 | 4.5 | TTTGGCATCAATAATGCTT |
| Desulfovibrio vulgaris Hildenborough | DVUA0016 | 26 | 4.3 | CTTGGCATCGGGTCTGCAA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2612 | -117 | 4.2 | GTTGGCATCGGCGATGCAT |
|
Position: -29
Score: 4.8 Sequence: GCTGGCACTTACTTTGCTT
Locus tag: Desal_0518
|
||||
| Desal_0518 | -29 | 4.8 | GCTGGCACTTACTTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nifA-2 | ||||
| Ortholog function: transcriptional regulator, NifA subfamily, Fis Family | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_0518 | -29 | 4.8 | GCTGGCACTTACTTTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2528 | -29 | 4 | GGCGGAACCATCCTTGCAA |
|
Position: -97
Score: 4.3 Sequence: TTTGGCACCCAAATTGAAT
Locus tag: Desal_0581
|
||||
| Desal_0581 | -97 | 4.3 | TTTGGCACCCAAATTGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Dde_0439 | ||||
| Ortholog function: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12) | ||||
| Desulfovibrio desulfuricans G20 | Dde_0439 | -73 | 5.1 | CGTGGCATGCAACTTGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_0581 | -97 | 4.3 | TTTGGCACCCAAATTGAAT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1840 | -253 | 4.4 | GCTTGCACACTACTTGCAT |
|
Position: -30
Score: 4.7 Sequence: CATGGCACGGACTATGCCT
Locus tag: Desal_0622
|
||||
| Desal_0622 | -30 | 4.7 | CATGGCACGGACTATGCCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU2107 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0446 | -67 | 4.8 | ATCGGCACGGACATTGCTA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2301 | -43 | 4.7 | GGCGGCACGGCTCATGCTT |
| Desulfovibrio desulfuricans G20 | Dde_3197 | -49 | 4.2 | GTCGGCATCATTCCTGCCT |
| Desulfovibrio magneticus RS-1 | DMR_11290 | -42 | 4.9 | TTCGGCACGGTTCCTGCCT |
| Desulfovibrio salexigens DSM 2638 | Desal_0622 | -30 | 4.7 | CATGGCACGGACTATGCCT |
| Desulfovibrio vulgaris Hildenborough | DVU2107 | -51 | 4.4 | CACGGCATCATTCCTGCTT |
|
Position: -67
Score: 4.9 Sequence: TTTGGCACAGCACGTGCTT
Locus tag: Desal_0680
|
||||
| Desal_0680 | -67 | 4.9 | TTTGGCACAGCACGTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zraP | ||||
| Ortholog function: Zinc resistance-associated protein | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_0680 | -67 | 4.9 | TTTGGCACAGCACGTGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_0681 | -67 | 5.2 | TTTGGCACGGGCCATGCTT |
|
Position: -67
Score: 5.2 Sequence: TTTGGCACGGGCCATGCTT
Locus tag: Desal_0681
|
||||
| Desal_0681 | -67 | 5.2 | TTTGGCACGGGCCATGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zraP | ||||
| Ortholog function: Zinc resistance-associated protein | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_0680 | -67 | 4.9 | TTTGGCACAGCACGTGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_0681 | -67 | 5.2 | TTTGGCACGGGCCATGCTT |
|
Position: -80
Score: 4.3 Sequence: GTAGGTACGGATTCTGCTT
Locus tag: Desal_0829
|
||||
| Desal_0829 | -80 | 4.3 | GTAGGTACGGATTCTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Dde_0657 | ||||
| Ortholog function: 4Fe-4S ferredoxin iron-sulfur binding domain protein | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0164 | -82 | 4.6 | ATCGGAACGGATATTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_0657 | -83 | 4.6 | ACCGGCACGGTTTGTGCTG |
| Desulfovibrio salexigens DSM 2638 | Desal_0829 | -80 | 4.3 | GTAGGTACGGATTCTGCTT |
|
Position: -71
Score: 5 Sequence: TTTGGCCTGCACTTTGCAA
Locus tag: Desal_1008
|
||||
| Desal_1008 | -71 | 5 | TTTGGCCTGCACTTTGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flgF | ||||
| Ortholog function: Flagellar basal-body rod protein FlgF | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0593 | -92 | 4.2 | GACGGAACGGTATTTGCCC |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2410 | -46 | 4.8 | ACTGGCCTGGTATTTGCTC |
| Desulfovibrio desulfuricans G20 | Dde_3159 | -66 | 4.9 | GCTGGCCCGCATGTTGCAT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0391 | -101 | 5.3 | TTTGGCCCGCACTTTGCAT |
| Desulfovibrio magneticus RS-1 | DMR_31570 | -46 | 4.8 | GCTGGCCCGCATGTTGCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_1008 | -71 | 5 | TTTGGCCTGCACTTTGCAA |
| Desulfovibrio vulgaris Hildenborough | DVU0512 | -68 | 4.1 | CGTGGTCTGCATATTGCAA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2517 | -58 | 4.5 | TGTGGCCCATGCCTTGCAA |
| Lawsonia intracellularis PHE/MN1-00 | LI0740 | -147 | 4.6 | CTTGGTATAACTTTTGCTA |
|
Position: -87
Score: 4.3 Sequence: GACGGTATGCAATTTGCTT
Locus tag: Desal_1014
|
||||
| Desal_1014 | -87 | 4.3 | GACGGTATGCAATTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flgJ | ||||
| Ortholog function: Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0598 | -92 | 4.2 | GACGGAACGGTATTTGCCC |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2405 | -46 | 4.8 | ACTGGCCTGGTATTTGCTC |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_2003 | -57 | 4.9 | TTCGGCACGCTTTCTGCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_1014 | -87 | 4.3 | GACGGTATGCAATTTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0745 | -147 | 4.6 | CTTGGTATAACTTTTGCTA |
|
Position: -50
Score: 4.8 Sequence: AATGGCCCACCATTTGCTT
Locus tag: Desal_1153
|
||||
| Desal_1153 | -50 | 4.8 | AATGGCCCACCATTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fliF | ||||
| Ortholog function: Flagellar M-ring protein FliF | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0569 | -290 | 4.5 | ATTGGAGCACTTTTTGCTC |
| -130 | 4.7 | TATGGCGTGGTATTTGCAT | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3029 | -91 | 4.7 | TCTGGAATGGTCATTGCAA |
| Desulfovibrio desulfuricans G20 | Dde_0353 | -75 | 4.9 | CATGGAACACACCTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1573 | -79 | 4.5 | TTAGGCATGAATGTTGCTA |
| Desulfovibrio magneticus RS-1 | DMR_45050 | -82 | 4.9 | GCTGGAACGCTTTTTGCCC |
| Desulfovibrio salexigens DSM 2638 | Desal_1153 | -50 | 4.8 | AATGGCCCACCATTTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU0313 | -91 | 4.9 | CGTGGAACCCTTTTTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0857 | -68 | 5 | TATGGCATATGTTTTGCTT |
|
Position: -240
Score: 3.5 Sequence: TAATGCACACCCCGTGCCA
Position: -96
Score: 4.9 Sequence: AATGGAACACCTTTTGCTA
Locus tag: Desal_1156
|
||||
| Desal_1156 | -240 | 3.5 | TAATGCACACCCCGTGCCA | |
| -96 | 4.9 | AATGGAACACCTTTTGCTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flgB | ||||
| Ortholog function: Flagellar basal-body rod protein FlgB | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0653 | -159 | 3.5 | TAGGGCTCAGGTGTTGCCT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3026 | -91 | 4.7 | TCTGGAATGGTCATTGCAA |
| Desulfovibrio desulfuricans G20 | Dde_0356 | -75 | 4.9 | CATGGAACACACCTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1576 | -59 | 4.8 | TTTGGAACAAATGTTGCTT |
| Desulfovibrio magneticus RS-1 | DMR_45020 | -82 | 4.9 | GCTGGAACGCTTTTTGCCC |
| Desulfovibrio salexigens DSM 2638 | Desal_1156 | -96 | 4.9 | AATGGAACACCTTTTGCTA |
| Desulfovibrio vulgaris Hildenborough | DVU0316 | -91 | 4.9 | CGTGGAACCCTTTTTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2284 | -106 | 4.8 | GCTGGAACACCTCTTGCTG |
| Lawsonia intracellularis PHE/MN1-00 | LI0860 | -68 | 5 | TATGGCATATGTTTTGCTT |
|
Position: -100
Score: 4.9 Sequence: TTTGGCACGGGGTGTGCAT
Locus tag: Desal_1157
|
||||
| Desal_1157 | -100 | 4.9 | TTTGGCACGGGGTGTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0318 | ||||
| Ortholog function: TPR repeat-containing protein | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_1157 | -100 | 4.9 | TTTGGCACGGGGTGTGCAT |
|
Position: -38
Score: 4.6 Sequence: TACGGCACAAATATTGCTT
Locus tag: Desal_1243
|
||||
| Desal_1243 | -38 | 4.6 | TACGGCACAAATATTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0858 | ||||
| Ortholog function: lipoprotein, putative | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_0245 | -46 | 4.6 | CTTGGTATCTATCTTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_2573 | -132 | 4.2 | CATGGCCCTTCTTTTGCCG |
| -65 | 4.3 | CACGGCACTCAATTTGCAT | ||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0596 | -177 | 4.9 | TTTGGCACGTTTCTGGCAT |
| -148 | 4.3 | AATGGCACACACTGTGCCG | ||
| -54 | 4 | GTTGGCAAGGTGAATGCCA | ||
| Desulfovibrio salexigens DSM 2638 | Desal_1243 | -38 | 4.6 | TACGGCACAAATATTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU0858 | -79 | 5 | TCCGGCATCGTTCTTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2906 | -127 | 4.7 | TACGGCACCATTCTTGCTG |
|
Position: -67
Score: 4.9 Sequence: TTTGGCATCCTGATTGCAT
Locus tag: Desal_1249
|
||||
| Desal_1249 | -67 | 4.9 | TTTGGCATCCTGATTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fliD | ||||
| Ortholog function: Flagellar hook-associated protein FliD | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_2386 | -64 | 4.7 | TCTGGCACCAGGTTTGCTC |
| Desulfovibrio desulfuricans G20 | Dde_1120 | -70 | 4.7 | CATGGCATTTTCCTTGCAT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0530 | -82 | 4.5 | AGTTGCACGCATTTTGCAA |
| Desulfovibrio magneticus RS-1 | DMR_03980 | -71 | 4.9 | GTTGGCATCCGCCTTGCTC |
| Desulfovibrio salexigens DSM 2638 | Desal_1249 | -67 | 4.9 | TTTGGCATCCTGATTGCAT |
| Desulfovibrio vulgaris Hildenborough | DVU0863 | -71 | 4.2 | CGTGGCATCTGGATTGCAT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2912 | -73 | 4.7 | TCTGGCACCAGCCTTGCAG |
|
Position: -51
Score: 5.1 Sequence: TTTGGCACCCCTTATGCTT
Locus tag: Desal_1330
|
||||
| Desal_1330 | -51 | 5.1 | TTTGGCACCCCTTATGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0617 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_1330 | -51 | 5.1 | TTTGGCACCCCTTATGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU0617 | -60 | 4.8 | TCTGGCCCGTTTCCTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1509 | -29 | 4 | TATGGCGCGGAAAGTGCTG |
|
Position: -282
Score: 3.4 Sequence: GCTGGCACAATTTGTACCG
Position: -192
Score: 3.7 Sequence: GCTTGAATAAGCTTTGCAT
Position: -181
Score: 3.3 Sequence: CTTTGCATACCTGTTTTTT
Position: -88
Score: 5 Sequence: TGTGGCACAGCGTTTGCTC
Position: -13
Score: 3.3 Sequence: AATGGAAACGAATATGCAG
Locus tag: Desal_2196
|
||||
| Desal_2196 | -282 | 3.4 | GCTGGCACAATTTGTACCG | |
| -192 | 3.7 | GCTTGAATAAGCTTTGCAT | ||
| -181 | 3.3 | CTTTGCATACCTGTTTTTT | ||
| -88 | 5 | TGTGGCACAGCGTTTGCTC | ||
| -13 | 3.3 | AATGGAAACGAATATGCAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0139 | ||||
| Ortholog function: integral membrane sensor signal transduction histidine kinase | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_2196 | -88 | 5 | TGTGGCACAGCGTTTGCTC |
| Desulfovibrio vulgaris Hildenborough | DVU0139 | -79 | 4.8 | AATGGTACGCTGTTTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2333 | -57 | 3.4 | GGCGGCATCATGTCTGTTC |
|
Position: -102
Score: 5 Sequence: TACGGCACGCCTCCTGCTT
Locus tag: Desal_2290
|
||||
| Desal_2290 | -102 | 5 | TACGGCACGCCTCCTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnN | ||||
| Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2) | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_1496 | -89 | 4.4 | TGTGGCATCTGAATTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_0102 | -96 | 4.7 | GTTGGCACCGACTCTGCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_2290 | -102 | 5 | TACGGCACGCCTCCTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU1258 | -100 | 5.2 | ATTGGCCCGCTCTTTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1590 | -201 | 4.9 | AGTGGACCGCTTCTTGCTT |
|
Position: -59
Score: 4.6 Sequence: CATGGCACCAATTATGCTT
Locus tag: Desal_2292
|
||||
| Desal_2292 | -59 | 4.6 | CATGGCACCAATTATGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0750 | ||||
| Ortholog function: methyl-accepting chemotaxis protein | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_2292 | -59 | 4.6 | CATGGCACCAATTATGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU0750 | -201 | 4.9 | AATGGCACTGCTCTTGCTG |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2785 | -63 | 5.3 | CATGGCACGGCCCTTGCTG |
|
Position: -77
Score: 4.8 Sequence: ATTGGCATTACCCTTGCTT
Locus tag: Desal_2461
|
||||
| Desal_2461 | -77 | 4.8 | ATTGGCATTACCCTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Dbac_2976 | ||||
| Ortholog function: OmpA/MotB domain protein | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_2976 | -40 | 4.4 | GTTGGCATGAATCTGGCTC |
| Desulfovibrio salexigens DSM 2638 | Desal_2461 | -77 | 4.8 | ATTGGCATTACCCTTGCTT |
|
Position: -41
Score: 3.4 Sequence: ATGGGTCCTGATTTTGCAG
Locus tag: Desal_2592
|
||||
| Desal_2592 | -41 | 3.4 | ATGGGTCCTGATTTTGCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fliR | ||||
| Ortholog function: Flagellar biosynthesis protein FliR | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0586 | -51 | 4.5 | GCTGGCATAATTTATGCTA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3473 | -30 | 4.7 | TCTGGTCCGCGTTTTGCTG |
| Desulfovibrio desulfuricans G20 | Dde_0378 | -30 | 4.6 | GATGGTCTGTTTTTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0193 | -29 | 4.7 | TTTGGCAACCATTTTGCAA |
| Desulfovibrio magneticus RS-1 | DMR_23860 | -29 | 4.6 | CTTGGTCCAGCTTTTGCTA |
| Desulfovibrio salexigens DSM 2638 | Desal_2592 | -41 | 3.4 | ATGGGTCCTGATTTTGCAG |
| Desulfovibrio vulgaris Hildenborough | DVU3234 | -29 | 4.8 | CGTGGCCCGTATTTTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2016 | -29 | 5.1 | CATGGCCCGCATCTTGCTG |
|
Position: -77
Score: 4.3 Sequence: GCTGGCGCACCTATTGCCC
Locus tag: Desal_2601
|
||||
| Desal_2601 | -77 | 4.3 | GCTGGCGCACCTATTGCCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU3225 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3464 | -95 | 4.8 | CCTGGCCCGTTTTTTGCCA |
| Desulfovibrio desulfuricans G20 | Dde_0387 | -145 | 4.8 | GCTGGCACGGGCCTTGTAT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0321 | -96 | 4.5 | CTTGGCCCCTAATTTGCAT |
| Desulfovibrio magneticus RS-1 | DMR_23950 | -156 | 4.7 | CTTGGCACAGGCCTTGTAT |
| Desulfovibrio salexigens DSM 2638 | Desal_2601 | -77 | 4.3 | GCTGGCGCACCTATTGCCC |
| Desulfovibrio vulgaris Hildenborough | DVU3225 | -199 | 4.8 | GCTGGCACGGGCCTTGTAT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2007 | -177 | 4.6 | GCTGGCACAGGCTTTGTAT |
|
Position: -43
Score: 4.6 Sequence: GATGGCATATTATTTGCTG
Locus tag: Desal_2604
|
||||
| Desal_2604 | -43 | 4.6 | GATGGCATATTATTTGCTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpxC | ||||
| Ortholog function: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2081 | -40 | 4.9 | CGTGGAATGATTTTTGCTT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2789 | -29 | 4.4 | TCTGGCATGAAGTTTGATA |
| Desulfovibrio desulfuricans G20 | Dde_2986 | -41 | 4.8 | AACGGCACGATTATTGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_2604 | -43 | 4.6 | GATGGCATATTATTTGCTG |
| Desulfovibrio vulgaris Hildenborough | DVU2917 | -196 | 4 | GACGGCAAGCCGCCTGCTG |
| -40 | 5.3 | TCTGGCACATCTTTTGCTT | ||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1446 | -38 | 5.3 | TTTGGCACGGTTCATGCTC |
| Lawsonia intracellularis PHE/MN1-00 | LI0627 | -40 | 4.3 | TTTGGATCGTTTATTGCAT |
|
Position: -59
Score: 4.3 Sequence: GTTGGTACGTTTGCTGCAA
Locus tag: Desal_2614
|
||||
| Desal_2614 | -59 | 4.3 | GTTGGTACGTTTGCTGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU3387 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_1772 | -70 | 4.4 | GCTGGCCCGAAATCTGCTA |
| Desulfovibrio desulfuricans G20 | Dde_0108 | -57 | 4.2 | ATCGGCACTATGGTTGCTA |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0311 | -61 | 4.8 | CTTGGCACTGTACTTGCTG |
| Desulfovibrio magneticus RS-1 | DMR_05460 | -13 | 4.1 | GTCGGCACAAGGGTTGCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_2614 | -59 | 4.3 | GTTGGTACGTTTGCTGCAA |
| Desulfovibrio vulgaris Hildenborough | DVU3387 | -92 | 4.1 | GCAGGTGCGGTTCTTGCTA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2067 | -67 | 5 | GCTGGCATTCCCCTTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0507 | -62 | 3.9 | TAAGGCCTAAAATTTGCAT |
|
Position: -81
Score: 4.8 Sequence: GTTGGCATGACTCTTGTAT
Locus tag: Desal_2827
|
||||
| Desal_2827 | -81 | 4.8 | GTTGGCATGACTCTTGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0410 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0313 | -75 | 4.9 | AATGGCATACAGTTTGCTT |
| Desulfovibrio magneticus RS-1 | DMR_25590 | -78 | 4.9 | TTTGGCACGGTTGTTGTAA |
| Desulfovibrio salexigens DSM 2638 | Desal_2827 | -81 | 4.8 | GTTGGCATGACTCTTGTAT |
| Desulfovibrio vulgaris Hildenborough | DVU0410 | -70 | 5.1 | GTTGGCCCGGAATTTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1546 | -75 | 4.8 | CATGGTCCGTTTCTTGCTT |
|
Position: -115
Score: 5.2 Sequence: TTAGGCACGCCCCTTGCTT
Locus tag: Desal_2938
|
||||
| Desal_2938 | -115 | 5.2 | TTAGGCACGCCCCTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flgE | ||||
| Ortholog function: Flagellar hook protein FlgE | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_1614 | -84 | 4.1 | CATGGACCCATTCCTGCAT |
| Desulfovibrio desulfuricans G20 | Dde_0298 | -86 | 5.3 | TCTGGCACGGTCCATGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_2091 | -76 | 5.3 | TCTGGCACGCTCTCTGCAT |
| Desulfovibrio salexigens DSM 2638 | Desal_2938 | -115 | 5.2 | TTAGGCACGCCCCTTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU0307 | -59 | 5.3 | TCTGGCACGGCTCGTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1808 | -128 | 5.2 | GCTGGCACGGCTCGTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0348 | -77 | 5.2 | CTTGGCATGGCTTCTGCTT |
|
Position: -73
Score: 3.9 Sequence: GTAGGCAGGAATATTGCAA
Locus tag: Desal_2983
|
||||
| Desal_2983 | -73 | 3.9 | GTAGGCAGGAATATTGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU2896 | ||||
| Ortholog function: Tetratricopeptide domain protein | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_2983 | -73 | 3.9 | GTAGGCAGGAATATTGCAA |
|
Position: -69
Score: 5.1 Sequence: TTTGGCACACGCTCTGCTT
Locus tag: Desal_3004
|
||||
| Desal_3004 | -69 | 5.1 | TTTGGCACACGCTCTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flaB1 | ||||
| Ortholog function: Flagellin (flaB1) | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_2430 | -53 | 4.1 | AATGGCATTCTGTGTGCAA |
| Desulfovibrio desulfuricans G20 | Dde_1709 | -53 | 5.1 | TTTGGCACCACCTTTGCTC |
| Desulfovibrio salexigens DSM 2638 | Desal_3004 | -69 | 5.1 | TTTGGCACACGCTCTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU1441 | -54 | 4.9 | ATTGGCATCGTGTTTGCTG |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0244 | -54 | 4.9 | GTTGGCACCAACATTGCTT |
|
Position: -43
Score: 4.7 Sequence: TTTGGCACGCCTCGTGAAT
Locus tag: Desal_3007
|
||||
| Desal_3007 | -43 | 4.7 | TTTGGCACGCCTCGTGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fliK | ||||
| Ortholog function: Flagellar hook-length control protein FliK | ||||
| Desulfovibrio magneticus RS-1 | DMR_13730 | -43 | 4.4 | TTTGGAACGGGTCTTGAAG |
| Desulfovibrio salexigens DSM 2638 | Desal_3007 | -43 | 4.7 | TTTGGCACGCCTCGTGAAT |
|
Position: -67
Score: 3.9 Sequence: ATTGGCACGAATAGAGCTT
Locus tag: Desal_3028
|
||||
| Desal_3028 | -67 | 3.9 | ATTGGCACGAATAGAGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Ddes_2346 | ||||
| Ortholog function: OsmC family protein | ||||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_2346 | -62 | 4.3 | TCTGGCATCATTAGTGCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_3028 | -67 | 3.9 | ATTGGCACGAATAGAGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_3544 | -184 | 5.2 | TTTGGCCCGCTTATTGCTC |
|
Position: -65
Score: 5.1 Sequence: TTTGGCACAGTCCATGCTT
Locus tag: Desal_3066
|
||||
| Desal_3066 | -65 | 5.1 | TTTGGCACAGTCCATGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt | ||||
| Ortholog function: Ammonium transporter | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0113 | -70 | 4.8 | ATTGGCCCCATCCTTGCTA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3049 | -56 | 4.8 | TTTGGCACTGCCTGTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_3492 | -71 | 4.9 | TTTGGCCCTCCTTTTGCTC |
| Desulfovibrio salexigens DSM 2638 | Desal_3066 | -65 | 5.1 | TTTGGCACAGTCCATGCTT |
|
Position: -65
Score: 4 Sequence: TCAGGCATAATTACTGCAT
Locus tag: Desal_3185
|
||||
| Desal_3185 | -65 | 4 | TCAGGCATAATTACTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU1880 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfovibrio salexigens DSM 2638 | Desal_3185 | -65 | 4 | TCAGGCATAATTACTGCAT |
|
Position: -111
Score: 4.8 Sequence: TTTGGCATGCGGATTGCCT
Locus tag: Desal_3303
|
||||
| Desal_3303 | -111 | 4.8 | TTTGGCATGCGGATTGCCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ald | ||||
| Ortholog function: Alanine dehydrogenase (EC 1.4.1.1) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1485 | -210 | 4.6 | TTTGGCAAAGTTTGTGCAT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3071 | -67 | 4.4 | TGTGGTAAGCTTTTTGCCA |
| Desulfovibrio desulfuricans G20 | Dde_1553 | -84 | 5.1 | TCTGGCAAGGTGTTTGCTT |
| Desulfovibrio magneticus RS-1 | DMR_45640 | -76 | 4.6 | CCTGGCAAGGGACTTGCTA |
| Desulfovibrio salexigens DSM 2638 | Desal_3303 | -111 | 4.8 | TTTGGCATGCGGATTGCCT |
| Desulfovibrio vulgaris Hildenborough | DVU0571 | -124 | 5 | GTTGGCAAGGCCTTTGCTA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2154 | -120 | 5 | GTTGGCAAGGCGTTTGCTT |
|
Position: -145
Score: 4.8 Sequence: TTTGGCACAATGCGTGCTT
Locus tag: Desal_3438
|
||||
| Desal_3438 | -145 | 4.8 | TTTGGCACAATGCGTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt | ||||
| Ortholog function: Ammonium transporter | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2267 | -53 | 5.1 | TTTGGCACCTCTCTTGCCT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3048 | -45 | 5.2 | TATGGCACCGTCCTTGCTC |
| Desulfovibrio desulfuricans G20 | Dde_2311 | -75 | 5.2 | TCTGGCCTGCTGCTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1147 | -126 | 4.7 | CTTGGCACAGATAGTGCTT |
| Desulfovibrio piger ATCC 29098 | DESPIG_00642 | -127 | 5.1 | TATGGCACAGGGCTTGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_3438 | -145 | 4.8 | TTTGGCACAATGCGTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU1231 | -81 | 5 | GTTGGCACGCGACTTGCCT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0866 | -98 | 5.3 | GATGGCACGCTCCTTGCCT |
|
Position: -81
Score: 4.3 Sequence: TCTGGCATAACGAGTGCTT
Locus tag: Desal_3506
|
||||
| Desal_3506 | -81 | 4.3 | TCTGGCATAACGAGTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||