Propagation of NifA-1 regulog to Desulfovibrio salexigens DSM 2638

Reference regulog properties
Source regulog:	NifA-1 - Desulfovibrionales
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:
Biological process:	Nitrogen assimilation
Effector:
Phylum:	Proteobacteria/delta
Propagated regulon:
Target genome	Desulfovibrio salexigens DSM 2638
Orthologous TF(s)	Desal_1531
Regulated genes	13

Built upon 101 sites [see more]

Predicted regulatory interactions in *Desulfovibrio salexigens DSM 2638*
	Locus tag	Position	Score	Sequence
Position: -108 Score: 4.8 Sequence: TTTACATAAATGTGAA Locus tag: Desal_0518
	Desal_0518	-108	4.8	TTTACATAAATGTGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifA-2
Ortholog function: transcriptional regulator, NifA, Fis Family
Desulfovibrio salexigens DSM 2638	Desal_0518	-138	4.2	TTTCCATTAATGTTCA
		-108	4.8	TTTACATAAATGTGAA
Desulfovibrio vulgaris str. Miyazaki F	DvMF_2528	-170	3.6	TATTCAAAAATGGTAT
		-138	4.4	TTTCGATAATTGTAAA

Position: -254 Score: 4 Sequence: CTGAAATAAGTGTAAA Position: -197 Score: 4.5 Sequence: TGTACATAAATGGAAA Locus tag: Desal_1519
	Desal_1519	-254	4	CTGAAATAAGTGTAAA
		-197	4.5	TGTACATAAATGGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: ABC-type polar amino acid transport system, ATPase component
Desulfovibrio desulfuricans G20	Dde_1428	-253	5.1	TTTACAATTATGTAAC
		-59	3.7	TTGACAATTTTGAGCA
		23	3.5	TATTCATAAATGGTAC
Desulfovibrio salexigens DSM 2638	Desal_1519	-358	3.9	TTGTCTTTTTTGTATA
		-197	4.5	TGTACATAAATGGAAA
Desulfovibrio vulgaris Hildenborough	DVU2343	-403	3.7	TTGTCTTGTTTGTAAA
		-248	4.1	ATTACTTTTTTGTCAC
Desulfovibrio vulgaris str. Miyazaki F	DvMF_3151	-340	4.6	TTTACGTTTTTGTTAA
		-67	4.7	CTGACAATATGGTAAA

Position: -140 Score: 4.4 Sequence: CTGTCAATTTTGAAAA Locus tag: Desal_1531
	Desal_1531	-140	4.4	CTGTCAATTTTGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifA-1
Ortholog function: transcriptional regulator, NifA subfamily, Fis Family
Desulfomicrobium baculatum DSM 4028	Dbac_1505	-38	5.1	TTTACAATAATGGCAA
Desulfovibrio desulfuricans G20	Dde_1635	-99	4.9	TTGACATTTCTGTAAG
Desulfovibrio salexigens DSM 2638	Desal_1531	-140	4.4	CTGTCAATTTTGAAAA
Desulfovibrio vulgaris Hildenborough	DVU1949	-92	4.9	TTGACATTTCTGTAAG
Desulfovibrio vulgaris str. Miyazaki F	DvMF_0608	-92	4.8	TTGACATTTCTGTAAT

Position: -76 Score: 4.5 Sequence: TTGACCTTTTTGTCAG Locus tag: Desal_1534
	Desal_1534	-76	4.5	TTGACCTTTTTGTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1952
Ortholog function: hypothetical protein
Desulfovibrio salexigens DSM 2638	Desal_1534	-231	3.9	ATTGCAAAAAAGTCAA
		-76	4.5	TTGACCTTTTTGTCAG

Position: -114 Score: 3.4 Sequence: TTAACGCAAAAGTAAA Locus tag: Desal_1630
	Desal_1630	-114	3.4	TTAACGCAAAAGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB-1
Ortholog function: Glutamate synthase, large subunit (gltB-1)
Desulfovibrio desulfuricans G20	Dde_1814	-254	4.9	ATTACAAAATTGTAAT
		-208	3.7	TTCTCAAAAATATAAA
		-46	4.2	TAAACATTTTTGTCAC
Desulfovibrio vulgaris Hildenborough	DVU1823	-240	4.1	GTCTCAAAATTGTAAA
Desulfovibrio vulgaris str. Miyazaki F	DvMF_0546	-403	3.5	AGAACAAAAATGTTAT

Position: -276 Score: 4.7 Sequence: TATACAATTTTGTAAC Position: -225 Score: 4.8 Sequence: ATTACATTTTTGTAAC Position: -182 Score: 4.6 Sequence: TCTACATTTTTGTAAG Locus tag: Desal_2290
	Desal_2290	-276	4.7	TATACAATTTTGTAAC
		-225	4.8	ATTACATTTTTGTAAC
		-182	4.6	TCTACATTTTTGTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnN
Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Desulfomicrobium baculatum DSM 4028	Dbac_1496	-328	4	TTGACATTTATGTGCA
		-208	4.6	TTTGCAAATTTGTAAT
		-155	4.5	ATTTCAAAAATGTAAT
Desulfovibrio desulfuricans G20	Dde_0102	-216	4.1	TTAACAAAAAAGTTAA
		-174	4.7	TAAACATTTATGTAAA
Desulfovibrio magneticus RS-1	DMR_10730	-335	3.7	TTGACACAATTGTTTC
		-236	4.4	TTTACATTATTGCTAG
Desulfovibrio salexigens DSM 2638	Desal_2290	-276	4.7	TATACAATTTTGTAAC
		-225	4.8	ATTACATTTTTGTAAC
		-182	4.6	TCTACATTTTTGTAAG
Desulfovibrio vulgaris Hildenborough	DVU1258	-411	4.3	TTTACATATTTGATAC
		-275	4.7	TATACATTTTTGGAAA
		-230	4.6	ATTACAATAGTGTCAA
		-178	4.3	TTTACTATTTTGAAAG
Desulfovibrio vulgaris str. Miyazaki F	DvMF_1590	-332	3.9	GTTACAAGTTTGCAAA
		-288	3.9	TGAACGAATTTGTAAA
		-54	4	GAAACAAATTTGTAAG

Position: -185 Score: 4.7 Sequence: TTTACCTTTTTGTAAT Locus tag: Desal_3066
	Desal_3066	-185	4.7	TTTACCTTTTTGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB2
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692	Dret_0113	-393	3.9	GTTTCAGAAATGGAAG
		-270	4.5	ATTCCATTTTTGTAAC
		-151	5	TTTTCAATTTTGTCAA
Desulfomicrobium baculatum DSM 4028	Dbac_3049	-284	4.5	CTTCCAAAATTGAAAA
		-176	4.7	TATACATAAATGTTAA
		-64	3.7	TTAACAACTTTGGCAC
Desulfovibrio desulfuricans G20	Dde_3492	-192	4.9	TTTACTTTTTTGTAAA
		-160	5.2	TTGACATATATGTCAA
Desulfovibrio salexigens DSM 2638	Desal_3066	-289	4.4	CTGAAAAAATTGTCAA
		-185	4.7	TTTACCTTTTTGTAAT
		-134	4.4	AATACATTTTTGTAAT

Position: -339 Score: 3.9 Sequence: TTGCCAAAATTGTTTT Locus tag: Desal_3280
	Desal_3280	-339	3.9	TTGCCAAAATTGTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU3290
Ortholog function: putative glutamate synthase, large subunit (domain 1)
Desulfomicrobium baculatum DSM 4028	Dbac_1372	-117	4.4	TCTACATTTTTGTCAT
		-75	4.3	ATGACATTTCTGTCAT
Desulfovibrio salexigens DSM 2638	Desal_3280	-339	3.9	TTGCCAAAATTGTTTT
Desulfovibrio vulgaris Hildenborough	DVU3290	-230	4.2	TAGACAAAAATGTTAC
		-178	4	TTGCCATTTTTGATAT
Desulfovibrio vulgaris str. Miyazaki F	DvMF_2387	-176	4.1	GTGGCAAAAATGTAAT
		-153	4.2	AGTACAAATATGTAAT
		-101	3.8	TTGCCGTTTTTGGAAT

Position: -153 Score: 3.6 Sequence: TTAACAAAAATGATTT Position: -9 Score: 3.6 Sequence: TGTACAAAAGTGATAA Locus tag: Desal_3370
	Desal_3370	-153	3.6	TTAACAAAAATGATTT
		-9	3.6	TGTACAAAAGTGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0751
Ortholog function: amino acid ABC transporter, ATP-binding protein
Desulfovibrio desulfuricans G20	Dde_2763	-139	4.5	ATAACAAATTTGTAAT
Desulfovibrio salexigens DSM 2638	Desal_3370	-153	3.6	TTAACAAAAATGATTT
		-9	3.6	TGTACAAAAGTGATAA
Desulfovibrio vulgaris Hildenborough	DVU0753	-246	4.1	TTGACGTTTTTGAAAT
		-106	4.8	ATGACAGTTTTGTAAA
Desulfovibrio vulgaris str. Miyazaki F	DvMF_2788	-305	4.1	CTGACAATTTCGCAAA
		-177	4.2	GAAACATTAATGTCAA

Position: 10 Score: 3.8 Sequence: TTGAAATAATTGTACG Locus tag: Desal_3437
	Desal_3437	10	3.8	TTGAAATAATTGTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: Nitrogen regulatory protein P-II
Desulfohalobium retbaense DSM 5692	Dret_2268	-173	3.9	GTAACAAATTTGTCCA
		-132	4.2	ATGCCATTTTTGACAA
Desulfomicrobium baculatum DSM 4028	Dbac_3047	-387	4.5	TTTTCAATTTTGGAAG
Desulfovibrio desulfuricans G20	Dde_2310	-207	3.7	TTAACAAAATTGTGTT
		-175	4.3	ATAACAAATATGTATA
Desulfovibrio magneticus RS-1	DMR_34880	-158	4.4	GTTGCAAAAATGTCAA
Desulfovibrio salexigens DSM 2638	Desal_3437	-204	4	TTTCCAATTATGTTTT
		-153	4	TTTTCAGTTTTGGCAC
		-91	3.7	TGTCTAAAATTGTAAA
		-50	4	GAGACGAAATTGTAAA
Desulfovibrio vulgaris Hildenborough	DVU1232	-159	3.9	ACGACAAAAATGCAAA
Desulfovibrio vulgaris str. Miyazaki F	DvMF_0865	-208	4.1	TTTACAAAAAAGAAAC
		-176	4.3	GTTACCAAAATGGAAA
		-175	3.9	TTACCAAAATGGAAAA

Position: -204 Score: 4 Sequence: TTTCCAATTATGTTTT Position: -153 Score: 4 Sequence: TTTTCAGTTTTGGCAC Position: -50 Score: 4 Sequence: GAGACGAAATTGTAAA Locus tag: Desal_3438
	Desal_3438	-204	4	TTTCCAATTATGTTTT
		-153	4	TTTTCAGTTTTGGCAC
		-50	4	GAGACGAAATTGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692	Dret_2267	-173	3.9	GTAACAAATTTGTCCA
		-132	4.2	ATGCCATTTTTGACAA
Desulfomicrobium baculatum DSM 4028	Dbac_3048	-387	4.5	TTTTCAATTTTGGAAG
Desulfovibrio desulfuricans G20	Dde_2311	-207	3.7	TTAACAAAATTGTGTT
		-175	4.3	ATAACAAATATGTATA
Desulfovibrio magneticus RS-1	DMR_34890	-158	4.4	GTTGCAAAAATGTCAA
Desulfovibrio salexigens DSM 2638	Desal_3438	-204	4	TTTCCAATTATGTTTT
		-153	4	TTTTCAGTTTTGGCAC
		-91	3.7	TGTCTAAAATTGTAAA
		-50	4	GAGACGAAATTGTAAA
Desulfovibrio vulgaris Hildenborough	DVU1231	-159	3.9	ACGACAAAAATGCAAA
Desulfovibrio vulgaris str. Miyazaki F	DvMF_0866	-208	4.1	TTTACAAAAAAGAAAC
		-176	4.3	GTTACCAAAATGGAAA
		-175	3.9	TTACCAAAATGGAAAA

Position: -194 Score: 3.8 Sequence: TTACAAATATTGTTAA Position: -92 Score: 4.8 Sequence: TTTACAATATTGATAA Position: -35 Score: 4.3 Sequence: CTAACAGTATTGAAAA Locus tag: Desal_3587
	Desal_3587	-194	3.8	TTACAAATATTGTTAA
		-92	4.8	TTTACAATATTGATAA
		-35	4.3	CTAACAGTATTGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0671
Ortholog function: Ferredoxin-dependent glutamate synthase
Desulfohalobium retbaense DSM 5692	Dret_0402	-87	4.6	TTTACATTTTCGTAAC
Desulfovibrio desulfuricans G20	Dde_1218	-353	4.7	TTGACGTTTATGTCAA
		-198	3.7	ATTGCATTTTTCTCAA
Desulfovibrio salexigens DSM 2638	Desal_3587	-194	3.8	TTACAAATATTGTTAA
		-92	4.8	TTTACAATATTGATAA
		-35	4.3	CTAACAGTATTGAAAA
Desulfovibrio vulgaris Hildenborough	DVU0671	-355	4.8	GTTACATTTTTGTAAT
Desulfovibrio vulgaris str. Miyazaki F	DvMF_2665	-369	3.7	TTCGCGAAATTGTAAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NifA-1 regulog to Desulfovibrio salexigens DSM 2638

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --