Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NifA-1 regulog to Desulfovibrio desulfuricans G20

Reference regulog properties
Source regulog: NifA-1 - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process: Nitrogen assimilation
Effector:
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio desulfuricans G20
Orthologous TF(s) Dde_1635
Regulated genes 9
Built upon 101 sites [see more]
Predicted regulatory interactions in Desulfovibrio desulfuricans G20
Locus tag Position Score Sequence
Position: -216
Score: 4.1
Sequence: TTAACAAAAAAGTTAA
Position: -174
Score: 4.7
Sequence: TAAACATTTATGTAAA
Locus tag: Dde_0102
Dde_0102 -216 4.1 TTAACAAAAAAGTTAA
-174 4.7 TAAACATTTATGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnN
Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Desulfomicrobium baculatum DSM 4028 Dbac_1496 -328 4 TTGACATTTATGTGCA
-208 4.6 TTTGCAAATTTGTAAT
-155 4.5 ATTTCAAAAATGTAAT
Desulfovibrio desulfuricans G20 Dde_0102 -216 4.1 TTAACAAAAAAGTTAA
-174 4.7 TAAACATTTATGTAAA
Desulfovibrio magneticus RS-1 DMR_10730 -335 3.7 TTGACACAATTGTTTC
-236 4.4 TTTACATTATTGCTAG
Desulfovibrio salexigens DSM 2638 Desal_2290 -276 4.7 TATACAATTTTGTAAC
-225 4.8 ATTACATTTTTGTAAC
-182 4.6 TCTACATTTTTGTAAG
Desulfovibrio vulgaris Hildenborough DVU1258 -411 4.3 TTTACATATTTGATAC
-275 4.7 TATACATTTTTGGAAA
-230 4.6 ATTACAATAGTGTCAA
-178 4.3 TTTACTATTTTGAAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_1590 -332 3.9 GTTACAAGTTTGCAAA
-288 3.9 TGAACGAATTTGTAAA
-54 4 GAAACAAATTTGTAAG
Position: -140
Score: 4
Sequence: TTTGCAAAAATGTGAT
Locus tag: Dde_0104
Dde_0104 -140 4 TTTGCAAAAATGTGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Desulfohalobium retbaense DSM 5692 Dret_2389 -182 4.5 TTTTCGTTTTTGTCAA
-173 3.9 TTGTCAATATTGGATC
-141 5 TTGACAAAAATGAAAA
Desulfomicrobium baculatum DSM 4028 Dbac_2819 -89 4.6 TTTCCAATTTTGCAAA
Desulfovibrio desulfuricans G20 Dde_0104 -140 4 TTTGCAAAAATGTGAT
Desulfovibrio vulgaris Hildenborough DVU3392 -176 3.9 TGAACAACATTGTCAA
-135 4.8 CTTCCAATAATGTAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_2099 -203 4.9 TTTACAATGATGTCAA
Position: -198
Score: 3.7
Sequence: ATTGCATTTTTCTCAA
Locus tag: Dde_1218
Dde_1218 -198 3.7 ATTGCATTTTTCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0671
Ortholog function: Ferredoxin-dependent glutamate synthase
Desulfohalobium retbaense DSM 5692 Dret_0402 -87 4.6 TTTACATTTTCGTAAC
Desulfovibrio desulfuricans G20 Dde_1218 -353 4.7 TTGACGTTTATGTCAA
-198 3.7 ATTGCATTTTTCTCAA
Desulfovibrio salexigens DSM 2638 Desal_3587 -194 3.8 TTACAAATATTGTTAA
-92 4.8 TTTACAATATTGATAA
-35 4.3 CTAACAGTATTGAAAA
Desulfovibrio vulgaris Hildenborough DVU0671 -355 4.8 GTTACATTTTTGTAAT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2665 -369 3.7 TTCGCGAAATTGTAAA
Position: -253
Score: 5.1
Sequence: TTTACAATTATGTAAC
Locus tag: Dde_1428
Dde_1428 -253 5.1 TTTACAATTATGTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: ABC-type polar amino acid transport system, ATPase component
Desulfovibrio desulfuricans G20 Dde_1428 -253 5.1 TTTACAATTATGTAAC
-59 3.7 TTGACAATTTTGAGCA
23 3.5 TATTCATAAATGGTAC
Desulfovibrio salexigens DSM 2638 Desal_1519 -358 3.9 TTGTCTTTTTTGTATA
-197 4.5 TGTACATAAATGGAAA
Desulfovibrio vulgaris Hildenborough DVU2343 -403 3.7 TTGTCTTGTTTGTAAA
-248 4.1 ATTACTTTTTTGTCAC
Desulfovibrio vulgaris str. Miyazaki F DvMF_3151 -340 4.6 TTTACGTTTTTGTTAA
-67 4.7 CTGACAATATGGTAAA
Position: -99
Score: 4.9
Sequence: TTGACATTTCTGTAAG
Locus tag: Dde_1634
Dde_1634 -99 4.9 TTGACATTTCTGTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1952
Ortholog function: hypothetical protein
Desulfovibrio desulfuricans G20 Dde_1634 -99 4.9 TTGACATTTCTGTAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_0611 -92 4.8 TTGACATTTCTGTAAT
Position: -208
Score: 3.7
Sequence: TTCTCAAAAATATAAA
Position: -126
Score: 3.6
Sequence: TTGACATTTTTTATAC
Position: -115
Score: 3.5
Sequence: TATACTTTTACGTTAA
Position: -46
Score: 4.2
Sequence: TAAACATTTTTGTCAC
Locus tag: Dde_1814
Dde_1814 -208 3.7 TTCTCAAAAATATAAA
-126 3.6 TTGACATTTTTTATAC
-115 3.5 TATACTTTTACGTTAA
-46 4.2 TAAACATTTTTGTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB-1
Ortholog function: Glutamate synthase, large subunit (gltB-1)
Desulfovibrio desulfuricans G20 Dde_1814 -254 4.9 ATTACAAAATTGTAAT
-208 3.7 TTCTCAAAAATATAAA
-46 4.2 TAAACATTTTTGTCAC
Desulfovibrio vulgaris Hildenborough DVU1823 -240 4.1 GTCTCAAAATTGTAAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_0546 -403 3.5 AGAACAAAAATGTTAT
Position: -175
Score: 4.3
Sequence: ATAACAAATATGTATA
Locus tag: Dde_2311
Dde_2311 -175 4.3 ATAACAAATATGTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692 Dret_2267 -173 3.9 GTAACAAATTTGTCCA
-132 4.2 ATGCCATTTTTGACAA
Desulfomicrobium baculatum DSM 4028 Dbac_3048 -387 4.5 TTTTCAATTTTGGAAG
Desulfovibrio desulfuricans G20 Dde_2311 -207 3.7 TTAACAAAATTGTGTT
-175 4.3 ATAACAAATATGTATA
Desulfovibrio magneticus RS-1 DMR_34890 -158 4.4 GTTGCAAAAATGTCAA
Desulfovibrio salexigens DSM 2638 Desal_3438 -204 4 TTTCCAATTATGTTTT
-153 4 TTTTCAGTTTTGGCAC
-91 3.7 TGTCTAAAATTGTAAA
-50 4 GAGACGAAATTGTAAA
Desulfovibrio vulgaris Hildenborough DVU1231 -159 3.9 ACGACAAAAATGCAAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_0866 -208 4.1 TTTACAAAAAAGAAAC
-176 4.3 GTTACCAAAATGGAAA
-175 3.9 TTACCAAAATGGAAAA
Position: -304
Score: 3.7
Sequence: TTTACAACACTGTTCA
Position: -139
Score: 4.5
Sequence: ATAACAAATTTGTAAT
Locus tag: Dde_2763
Dde_2763 -304 3.7 TTTACAACACTGTTCA
-139 4.5 ATAACAAATTTGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0751
Ortholog function: amino acid ABC transporter, ATP-binding protein
Desulfovibrio desulfuricans G20 Dde_2763 -139 4.5 ATAACAAATTTGTAAT
Desulfovibrio salexigens DSM 2638 Desal_3370 -153 3.6 TTAACAAAAATGATTT
-9 3.6 TGTACAAAAGTGATAA
Desulfovibrio vulgaris Hildenborough DVU0753 -246 4.1 TTGACGTTTTTGAAAT
-106 4.8 ATGACAGTTTTGTAAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2788 -305 4.1 CTGACAATTTCGCAAA
-177 4.2 GAAACATTAATGTCAA
Position: -192
Score: 4.9
Sequence: TTTACTTTTTTGTAAA
Position: -160
Score: 5.2
Sequence: TTGACATATATGTCAA
Locus tag: Dde_3492
Dde_3492 -192 4.9 TTTACTTTTTTGTAAA
-160 5.2 TTGACATATATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB2
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692 Dret_0113 -393 3.9 GTTTCAGAAATGGAAG
-270 4.5 ATTCCATTTTTGTAAC
-151 5 TTTTCAATTTTGTCAA
Desulfomicrobium baculatum DSM 4028 Dbac_3049 -284 4.5 CTTCCAAAATTGAAAA
-176 4.7 TATACATAAATGTTAA
-64 3.7 TTAACAACTTTGGCAC
Desulfovibrio desulfuricans G20 Dde_3492 -192 4.9 TTTACTTTTTTGTAAA
-160 5.2 TTGACATATATGTCAA
Desulfovibrio salexigens DSM 2638 Desal_3066 -289 4.4 CTGAAAAAATTGTCAA
-185 4.7 TTTACCTTTTTGTAAT
-134 4.4 AATACATTTTTGTAAT
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