Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NifA-1 regulog to Desulfomicrobium baculatum DSM 4028

Reference regulog properties
Source regulog: NifA-1 - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process: Nitrogen assimilation
Effector:
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfomicrobium baculatum DSM 4028
Orthologous TF(s) Dbac_1505
Regulated genes 7
Built upon 101 sites [see more]
Predicted regulatory interactions in Desulfomicrobium baculatum DSM 4028
Locus tag Position Score Sequence
Position: -117
Score: 4.4
Sequence: TCTACATTTTTGTCAT
Position: -75
Score: 4.3
Sequence: ATGACATTTCTGTCAT
Locus tag: Dbac_1372
Dbac_1372 -117 4.4 TCTACATTTTTGTCAT
-75 4.3 ATGACATTTCTGTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU3290
Ortholog function: putative glutamate synthase, large subunit (domain 1)
Desulfomicrobium baculatum DSM 4028 Dbac_1372 -117 4.4 TCTACATTTTTGTCAT
-75 4.3 ATGACATTTCTGTCAT
Desulfovibrio salexigens DSM 2638 Desal_3280 -339 3.9 TTGCCAAAATTGTTTT
Desulfovibrio vulgaris Hildenborough DVU3290 -230 4.2 TAGACAAAAATGTTAC
-178 4 TTGCCATTTTTGATAT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2387 -176 4.1 GTGGCAAAAATGTAAT
-153 4.2 AGTACAAATATGTAAT
-101 3.8 TTGCCGTTTTTGGAAT
Position: -328
Score: 4
Sequence: TTGACATTTATGTGCA
Position: -208
Score: 4.6
Sequence: TTTGCAAATTTGTAAT
Position: -155
Score: 4.5
Sequence: ATTTCAAAAATGTAAT
Locus tag: Dbac_1496
Dbac_1496 -328 4 TTGACATTTATGTGCA
-208 4.6 TTTGCAAATTTGTAAT
-155 4.5 ATTTCAAAAATGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnN
Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Desulfomicrobium baculatum DSM 4028 Dbac_1496 -328 4 TTGACATTTATGTGCA
-208 4.6 TTTGCAAATTTGTAAT
-155 4.5 ATTTCAAAAATGTAAT
Desulfovibrio desulfuricans G20 Dde_0102 -216 4.1 TTAACAAAAAAGTTAA
-174 4.7 TAAACATTTATGTAAA
Desulfovibrio magneticus RS-1 DMR_10730 -335 3.7 TTGACACAATTGTTTC
-236 4.4 TTTACATTATTGCTAG
Desulfovibrio salexigens DSM 2638 Desal_2290 -276 4.7 TATACAATTTTGTAAC
-225 4.8 ATTACATTTTTGTAAC
-182 4.6 TCTACATTTTTGTAAG
Desulfovibrio vulgaris Hildenborough DVU1258 -411 4.3 TTTACATATTTGATAC
-275 4.7 TATACATTTTTGGAAA
-230 4.6 ATTACAATAGTGTCAA
-178 4.3 TTTACTATTTTGAAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_1590 -332 3.9 GTTACAAGTTTGCAAA
-288 3.9 TGAACGAATTTGTAAA
-54 4 GAAACAAATTTGTAAG
Position: -38
Score: 5.1
Sequence: TTTACAATAATGGCAA
Locus tag: Dbac_1504
Dbac_1504 -38 5.1 TTTACAATAATGGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1952
Ortholog function: hypothetical protein
Desulfomicrobium baculatum DSM 4028 Dbac_1504 -38 5.1 TTTACAATAATGGCAA
Position: -89
Score: 4.6
Sequence: TTTCCAATTTTGCAAA
Locus tag: Dbac_2819
Dbac_2819 -89 4.6 TTTCCAATTTTGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Desulfohalobium retbaense DSM 5692 Dret_2389 -182 4.5 TTTTCGTTTTTGTCAA
-173 3.9 TTGTCAATATTGGATC
-141 5 TTGACAAAAATGAAAA
Desulfomicrobium baculatum DSM 4028 Dbac_2819 -89 4.6 TTTCCAATTTTGCAAA
Desulfovibrio desulfuricans G20 Dde_0104 -140 4 TTTGCAAAAATGTGAT
Desulfovibrio vulgaris Hildenborough DVU3392 -176 3.9 TGAACAACATTGTCAA
-135 4.8 CTTCCAATAATGTAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_2099 -203 4.9 TTTACAATGATGTCAA
Position: -176
Score: 4.7
Sequence: TATACATAAATGTTAA
Locus tag: Dbac_3049
Dbac_3049 -176 4.7 TATACATAAATGTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB2
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692 Dret_0113 -393 3.9 GTTTCAGAAATGGAAG
-270 4.5 ATTCCATTTTTGTAAC
-151 5 TTTTCAATTTTGTCAA
Desulfomicrobium baculatum DSM 4028 Dbac_3049 -284 4.5 CTTCCAAAATTGAAAA
-176 4.7 TATACATAAATGTTAA
-64 3.7 TTAACAACTTTGGCAC
Desulfovibrio desulfuricans G20 Dde_3492 -192 4.9 TTTACTTTTTTGTAAA
-160 5.2 TTGACATATATGTCAA
Desulfovibrio salexigens DSM 2638 Desal_3066 -289 4.4 CTGAAAAAATTGTCAA
-185 4.7 TTTACCTTTTTGTAAT
-134 4.4 AATACATTTTTGTAAT
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