Propagation of NifA-1 regulog to Desulfovibrio vulgaris str. DP4

Reference regulog properties
Source regulog:	NifA-1 - Desulfovibrionales
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:
Biological process:	Nitrogen assimilation
Effector:
Phylum:	Proteobacteria/delta
Propagated regulon:
Target genome	Desulfovibrio vulgaris str. DP4
Orthologous TF(s)	Dvul_1219
Regulated genes	7

Built upon 101 sites [see more]

Predicted regulatory interactions in *Desulfovibrio vulgaris str. DP4*
	Locus tag	Position	Score	Sequence
Position: -176 Score: 3.9 Sequence: TGAACAACATTGTCAA Position: -135 Score: 4.8 Sequence: CTTCCAATAATGTAAG Locus tag: Dvul_0009
	Dvul_0009	-176	3.9	TGAACAACATTGTCAA
		-135	4.8	CTTCCAATAATGTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Desulfohalobium retbaense DSM 5692	Dret_2389	-182	4.5	TTTTCGTTTTTGTCAA
		-173	3.9	TTGTCAATATTGGATC
		-141	5	TTGACAAAAATGAAAA
Desulfomicrobium baculatum DSM 4028	Dbac_2819	-89	4.6	TTTCCAATTTTGCAAA
Desulfovibrio desulfuricans G20	Dde_0104	-140	4	TTTGCAAAAATGTGAT
Desulfovibrio vulgaris Hildenborough	DVU3392	-176	3.9	TGAACAACATTGTCAA
		-135	4.8	CTTCCAATAATGTAAG
Desulfovibrio vulgaris str. Miyazaki F	DvMF_2099	-203	4.9	TTTACAATGATGTCAA

Position: -158 Score: 4.2 Sequence: TAGACAAAAATGTTAC Position: -106 Score: 4 Sequence: TTGCCATTTTTGATAT Locus tag: Dvul_0104
	Dvul_0104	-158	4.2	TAGACAAAAATGTTAC
		-106	4	TTGCCATTTTTGATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU3290
Ortholog function: putative glutamate synthase, large subunit (domain 1)
Desulfomicrobium baculatum DSM 4028	Dbac_1372	-117	4.4	TCTACATTTTTGTCAT
		-75	4.3	ATGACATTTCTGTCAT
Desulfovibrio salexigens DSM 2638	Desal_3280	-339	3.9	TTGCCAAAATTGTTTT
Desulfovibrio vulgaris Hildenborough	DVU3290	-230	4.2	TAGACAAAAATGTTAC
		-178	4	TTGCCATTTTTGATAT
Desulfovibrio vulgaris str. Miyazaki F	DvMF_2387	-176	4.1	GTGGCAAAAATGTAAT
		-153	4.2	AGTACAAATATGTAAT
		-101	3.8	TTGCCGTTTTTGGAAT

Position: -248 Score: 4.1 Sequence: ATTACTTTTTTGTCAC Locus tag: Dvul_0916
	Dvul_0916	-248	4.1	ATTACTTTTTTGTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: ABC-type polar amino acid transport system, ATPase component
Desulfovibrio desulfuricans G20	Dde_1428	-253	5.1	TTTACAATTATGTAAC
		-59	3.7	TTGACAATTTTGAGCA
		23	3.5	TATTCATAAATGGTAC
Desulfovibrio salexigens DSM 2638	Desal_1519	-358	3.9	TTGTCTTTTTTGTATA
		-197	4.5	TGTACATAAATGGAAA
Desulfovibrio vulgaris Hildenborough	DVU2343	-403	3.7	TTGTCTTGTTTGTAAA
		-248	4.1	ATTACTTTTTTGTCAC
Desulfovibrio vulgaris str. Miyazaki F	DvMF_3151	-340	4.6	TTTACGTTTTTGTTAA
		-67	4.7	CTGACAATATGGTAAA

Position: -92 Score: 4.9 Sequence: TTGACATTTCTGTAAG Locus tag: Dvul_1216
	Dvul_1216	-92	4.9	TTGACATTTCTGTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1952
Ortholog function: hypothetical protein
Desulfovibrio vulgaris Hildenborough	DVU1952	-92	4.9	TTGACATTTCTGTAAG

Position: -275 Score: 4.7 Sequence: TATACATTTTTGGAAA Position: -230 Score: 4.6 Sequence: ATTACAATAGTGTCAA Position: -178 Score: 4.3 Sequence: TTTACTATTTTGAAAG Locus tag: Dvul_1805
	Dvul_1805	-275	4.7	TATACATTTTTGGAAA
		-230	4.6	ATTACAATAGTGTCAA
		-178	4.3	TTTACTATTTTGAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnN
Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Desulfomicrobium baculatum DSM 4028	Dbac_1496	-328	4	TTGACATTTATGTGCA
		-208	4.6	TTTGCAAATTTGTAAT
		-155	4.5	ATTTCAAAAATGTAAT
Desulfovibrio desulfuricans G20	Dde_0102	-216	4.1	TTAACAAAAAAGTTAA
		-174	4.7	TAAACATTTATGTAAA
Desulfovibrio magneticus RS-1	DMR_10730	-335	3.7	TTGACACAATTGTTTC
		-236	4.4	TTTACATTATTGCTAG
Desulfovibrio salexigens DSM 2638	Desal_2290	-276	4.7	TATACAATTTTGTAAC
		-225	4.8	ATTACATTTTTGTAAC
		-182	4.6	TCTACATTTTTGTAAG
Desulfovibrio vulgaris Hildenborough	DVU1258	-411	4.3	TTTACATATTTGATAC
		-275	4.7	TATACATTTTTGGAAA
		-230	4.6	ATTACAATAGTGTCAA
		-178	4.3	TTTACTATTTTGAAAG
Desulfovibrio vulgaris str. Miyazaki F	DvMF_1590	-332	3.9	GTTACAAGTTTGCAAA
		-288	3.9	TGAACGAATTTGTAAA
		-54	4	GAAACAAATTTGTAAG

Position: -159 Score: 3.9 Sequence: ACGACAAAAATGCAAA Locus tag: Dvul_1831
	Dvul_1831	-159	3.9	ACGACAAAAATGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692	Dret_2267	-173	3.9	GTAACAAATTTGTCCA
		-132	4.2	ATGCCATTTTTGACAA
Desulfomicrobium baculatum DSM 4028	Dbac_3048	-387	4.5	TTTTCAATTTTGGAAG
Desulfovibrio desulfuricans G20	Dde_2311	-207	3.7	TTAACAAAATTGTGTT
		-175	4.3	ATAACAAATATGTATA
Desulfovibrio magneticus RS-1	DMR_34890	-158	4.4	GTTGCAAAAATGTCAA
Desulfovibrio salexigens DSM 2638	Desal_3438	-204	4	TTTCCAATTATGTTTT
		-153	4	TTTTCAGTTTTGGCAC
		-91	3.7	TGTCTAAAATTGTAAA
		-50	4	GAGACGAAATTGTAAA
Desulfovibrio vulgaris Hildenborough	DVU1231	-159	3.9	ACGACAAAAATGCAAA
Desulfovibrio vulgaris str. Miyazaki F	DvMF_0866	-208	4.1	TTTACAAAAAAGAAAC
		-176	4.3	GTTACCAAAATGGAAA
		-175	3.9	TTACCAAAATGGAAAA

Position: -105 Score: 4.8 Sequence: ATGACAGTTTTGTAAA Locus tag: Dvul_2217
	Dvul_2217	-105	4.8	ATGACAGTTTTGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0751
Ortholog function: amino acid ABC transporter, ATP-binding protein
Desulfovibrio desulfuricans G20	Dde_2763	-139	4.5	ATAACAAATTTGTAAT
Desulfovibrio salexigens DSM 2638	Desal_3370	-153	3.6	TTAACAAAAATGATTT
		-9	3.6	TGTACAAAAGTGATAA
Desulfovibrio vulgaris Hildenborough	DVU0753	-246	4.1	TTGACGTTTTTGAAAT
		-106	4.8	ATGACAGTTTTGTAAA
Desulfovibrio vulgaris str. Miyazaki F	DvMF_2788	-305	4.1	CTGACAATTTCGCAAA
		-177	4.2	GAAACATTAATGTCAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NifA-1 regulog to Desulfovibrio vulgaris str. DP4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --