Propagation of NifA-1 regulog to Desulfovibrio vulgaris str. DP4
| Source regulog: | NifA-1 - Desulfovibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | |
| Biological process: | Nitrogen assimilation |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Propagated regulon: | |
| Target genome | Desulfovibrio vulgaris str. DP4 |
| Orthologous TF(s) | Dvul_1219 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -176
Score: 3.9 Sequence: TGAACAACATTGTCAA
Position: -135
Score: 4.8 Sequence: CTTCCAATAATGTAAG
Locus tag: Dvul_0009
|
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| Dvul_0009 | -176 | 3.9 | TGAACAACATTGTCAA | |
| -135 | 4.8 | CTTCCAATAATGTAAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: Glutamine synthetase type I (EC 6.3.1.2) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2389 | -182 | 4.5 | TTTTCGTTTTTGTCAA |
| -173 | 3.9 | TTGTCAATATTGGATC | ||
| -141 | 5 | TTGACAAAAATGAAAA | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_2819 | -89 | 4.6 | TTTCCAATTTTGCAAA |
| Desulfovibrio desulfuricans G20 | Dde_0104 | -140 | 4 | TTTGCAAAAATGTGAT |
| Desulfovibrio vulgaris Hildenborough | DVU3392 | -176 | 3.9 | TGAACAACATTGTCAA |
| -135 | 4.8 | CTTCCAATAATGTAAG | ||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2099 | -203 | 4.9 | TTTACAATGATGTCAA |
|
Position: -158
Score: 4.2 Sequence: TAGACAAAAATGTTAC
Position: -106
Score: 4 Sequence: TTGCCATTTTTGATAT
Locus tag: Dvul_0104
|
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| Dvul_0104 | -158 | 4.2 | TAGACAAAAATGTTAC | |
| -106 | 4 | TTGCCATTTTTGATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU3290 | ||||
| Ortholog function: putative glutamate synthase, large subunit (domain 1) | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_1372 | -117 | 4.4 | TCTACATTTTTGTCAT |
| -75 | 4.3 | ATGACATTTCTGTCAT | ||
| Desulfovibrio salexigens DSM 2638 | Desal_3280 | -339 | 3.9 | TTGCCAAAATTGTTTT |
| Desulfovibrio vulgaris Hildenborough | DVU3290 | -230 | 4.2 | TAGACAAAAATGTTAC |
| -178 | 4 | TTGCCATTTTTGATAT | ||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2387 | -176 | 4.1 | GTGGCAAAAATGTAAT |
| -153 | 4.2 | AGTACAAATATGTAAT | ||
| -101 | 3.8 | TTGCCGTTTTTGGAAT | ||
|
Position: -248
Score: 4.1 Sequence: ATTACTTTTTTGTCAC
Locus tag: Dvul_0916
|
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| Dvul_0916 | -248 | 4.1 | ATTACTTTTTTGTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnQ | ||||
| Ortholog function: ABC-type polar amino acid transport system, ATPase component | ||||
| Desulfovibrio desulfuricans G20 | Dde_1428 | -253 | 5.1 | TTTACAATTATGTAAC |
| -59 | 3.7 | TTGACAATTTTGAGCA | ||
| 23 | 3.5 | TATTCATAAATGGTAC | ||
| Desulfovibrio salexigens DSM 2638 | Desal_1519 | -358 | 3.9 | TTGTCTTTTTTGTATA |
| -197 | 4.5 | TGTACATAAATGGAAA | ||
| Desulfovibrio vulgaris Hildenborough | DVU2343 | -403 | 3.7 | TTGTCTTGTTTGTAAA |
| -248 | 4.1 | ATTACTTTTTTGTCAC | ||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_3151 | -340 | 4.6 | TTTACGTTTTTGTTAA |
| -67 | 4.7 | CTGACAATATGGTAAA | ||
|
Position: -92
Score: 4.9 Sequence: TTGACATTTCTGTAAG
Locus tag: Dvul_1216
|
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| Dvul_1216 | -92 | 4.9 | TTGACATTTCTGTAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU1952 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfovibrio vulgaris Hildenborough | DVU1952 | -92 | 4.9 | TTGACATTTCTGTAAG |
|
Position: -275
Score: 4.7 Sequence: TATACATTTTTGGAAA
Position: -230
Score: 4.6 Sequence: ATTACAATAGTGTCAA
Position: -178
Score: 4.3 Sequence: TTTACTATTTTGAAAG
Locus tag: Dvul_1805
|
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| Dvul_1805 | -275 | 4.7 | TATACATTTTTGGAAA | |
| -230 | 4.6 | ATTACAATAGTGTCAA | ||
| -178 | 4.3 | TTTACTATTTTGAAAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnN | ||||
| Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2) | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_1496 | -328 | 4 | TTGACATTTATGTGCA |
| -208 | 4.6 | TTTGCAAATTTGTAAT | ||
| -155 | 4.5 | ATTTCAAAAATGTAAT | ||
| Desulfovibrio desulfuricans G20 | Dde_0102 | -216 | 4.1 | TTAACAAAAAAGTTAA |
| -174 | 4.7 | TAAACATTTATGTAAA | ||
| Desulfovibrio magneticus RS-1 | DMR_10730 | -335 | 3.7 | TTGACACAATTGTTTC |
| -236 | 4.4 | TTTACATTATTGCTAG | ||
| Desulfovibrio salexigens DSM 2638 | Desal_2290 | -276 | 4.7 | TATACAATTTTGTAAC |
| -225 | 4.8 | ATTACATTTTTGTAAC | ||
| -182 | 4.6 | TCTACATTTTTGTAAG | ||
| Desulfovibrio vulgaris Hildenborough | DVU1258 | -411 | 4.3 | TTTACATATTTGATAC |
| -275 | 4.7 | TATACATTTTTGGAAA | ||
| -230 | 4.6 | ATTACAATAGTGTCAA | ||
| -178 | 4.3 | TTTACTATTTTGAAAG | ||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1590 | -332 | 3.9 | GTTACAAGTTTGCAAA |
| -288 | 3.9 | TGAACGAATTTGTAAA | ||
| -54 | 4 | GAAACAAATTTGTAAG | ||
|
Position: -159
Score: 3.9 Sequence: ACGACAAAAATGCAAA
Locus tag: Dvul_1831
|
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| Dvul_1831 | -159 | 3.9 | ACGACAAAAATGCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amtB | ||||
| Ortholog function: Ammonium transporter | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2267 | -173 | 3.9 | GTAACAAATTTGTCCA |
| -132 | 4.2 | ATGCCATTTTTGACAA | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3048 | -387 | 4.5 | TTTTCAATTTTGGAAG |
| Desulfovibrio desulfuricans G20 | Dde_2311 | -207 | 3.7 | TTAACAAAATTGTGTT |
| -175 | 4.3 | ATAACAAATATGTATA | ||
| Desulfovibrio magneticus RS-1 | DMR_34890 | -158 | 4.4 | GTTGCAAAAATGTCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_3438 | -204 | 4 | TTTCCAATTATGTTTT |
| -153 | 4 | TTTTCAGTTTTGGCAC | ||
| -91 | 3.7 | TGTCTAAAATTGTAAA | ||
| -50 | 4 | GAGACGAAATTGTAAA | ||
| Desulfovibrio vulgaris Hildenborough | DVU1231 | -159 | 3.9 | ACGACAAAAATGCAAA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0866 | -208 | 4.1 | TTTACAAAAAAGAAAC |
| -176 | 4.3 | GTTACCAAAATGGAAA | ||
| -175 | 3.9 | TTACCAAAATGGAAAA | ||
|
Position: -105
Score: 4.8 Sequence: ATGACAGTTTTGTAAA
Locus tag: Dvul_2217
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| Dvul_2217 | -105 | 4.8 | ATGACAGTTTTGTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0751 | ||||
| Ortholog function: amino acid ABC transporter, ATP-binding protein | ||||
| Desulfovibrio desulfuricans G20 | Dde_2763 | -139 | 4.5 | ATAACAAATTTGTAAT |
| Desulfovibrio salexigens DSM 2638 | Desal_3370 | -153 | 3.6 | TTAACAAAAATGATTT |
| -9 | 3.6 | TGTACAAAAGTGATAA | ||
| Desulfovibrio vulgaris Hildenborough | DVU0753 | -246 | 4.1 | TTGACGTTTTTGAAAT |
| -106 | 4.8 | ATGACAGTTTTGTAAA | ||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2788 | -305 | 4.1 | CTGACAATTTCGCAAA |
| -177 | 4.2 | GAAACATTAATGTCAA | ||