Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RpoN regulog to Lawsonia intracellularis PHE/MN1-00

Reference regulog properties
Source regulog: RpoN - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Phylum: Proteobacteria
Propagated regulon:
Target genome Lawsonia intracellularis PHE/MN1-00
Orthologous TF(s) LI0457
Regulated genes 21
Built upon 487 sites [see more]
Predicted regulatory interactions in Lawsonia intracellularis PHE/MN1-00
Locus tag Position Score Sequence
Position: -57
Score: 4.4
Sequence: TTAGGCATAGTTTTTGATT
Locus tag: LI0277
LI0277 -57 4.4 TTAGGCATAGTTTTTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU3020
Ortholog function: hypothetical protein
Desulfovibrio desulfuricans G20 Dde_3230 -95 4.4 AATGGCAGAACCTTTGCAT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0695 -76 4.9 TTTGGCAAGACCTTTGCAT
Desulfovibrio magneticus RS-1 DMR_25570 -89 5 CTTGGCAGGCTCTTTGCTA
Desulfovibrio vulgaris Hildenborough DVU3020 -56 5.1 CATGGCATGTGCCTTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_1856 -71 4.7 CTCGGCAAGGCTCTTGCAT
Lawsonia intracellularis PHE/MN1-00 LI0277 -57 4.4 TTAGGCATAGTTTTTGATT
Position: -77
Score: 5.2
Sequence: CTTGGCATGGCTTCTGCTT
Locus tag: LI0348
LI0348 -77 5.2 CTTGGCATGGCTTCTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: flgE
Ortholog function: Flagellar hook protein FlgE
Desulfomicrobium baculatum DSM 4028 Dbac_1614 -84 4.1 CATGGACCCATTCCTGCAT
Desulfovibrio desulfuricans G20 Dde_0298 -86 5.3 TCTGGCACGGTCCATGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_2091 -76 5.3 TCTGGCACGCTCTCTGCAT
Desulfovibrio salexigens DSM 2638 Desal_2938 -115 5.2 TTAGGCACGCCCCTTGCTT
Desulfovibrio vulgaris Hildenborough DVU0307 -59 5.3 TCTGGCACGGCTCGTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_1808 -128 5.2 GCTGGCACGGCTCGTGCTT
Lawsonia intracellularis PHE/MN1-00 LI0348 -77 5.2 CTTGGCATGGCTTCTGCTT
Position: -62
Score: 3.9
Sequence: TAAGGCCTAAAATTTGCAT
Locus tag: LI0507
LI0507 -62 3.9 TAAGGCCTAAAATTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU3387
Ortholog function: hypothetical protein
Desulfomicrobium baculatum DSM 4028 Dbac_1772 -70 4.4 GCTGGCCCGAAATCTGCTA
Desulfovibrio desulfuricans G20 Dde_0108 -57 4.2 ATCGGCACTATGGTTGCTA
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0311 -61 4.8 CTTGGCACTGTACTTGCTG
Desulfovibrio magneticus RS-1 DMR_05460 -13 4.1 GTCGGCACAAGGGTTGCAA
Desulfovibrio salexigens DSM 2638 Desal_2614 -59 4.3 GTTGGTACGTTTGCTGCAA
Desulfovibrio vulgaris Hildenborough DVU3387 -92 4.1 GCAGGTGCGGTTCTTGCTA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2067 -67 5 GCTGGCATTCCCCTTGCTT
Lawsonia intracellularis PHE/MN1-00 LI0507 -62 3.9 TAAGGCCTAAAATTTGCAT
Position: -44
Score: 4.5
Sequence: TTTGGAACACTCCTTGTAC
Locus tag: LI0568
LI0568 -44 4.5 TTTGGAACACTCCTTGTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fliK
Ortholog function: Flagellar hook-length control protein FliK
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1259 -43 4.6 TTTGGAACACTCTTTGTAT
Desulfovibrio vulgaris Hildenborough DVU1445 -82 3.9 TATGGCGCGGGAAATGCAA
-43 4.5 ATTGGAACACTCCTTGTAT
Desulfovibrio vulgaris str. Miyazaki F DvMF_0248 -44 4.7 TTTGGAACGGTCCTTGTAA
Lawsonia intracellularis PHE/MN1-00 LI0568 -44 4.5 TTTGGAACACTCCTTGTAC
Position: -56
Score: 4.2
Sequence: ATTGGTATATCCATTGCAT
Locus tag: LI0570
LI0570 -56 4.2 ATTGGTATATCCATTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fliC
Ortholog function: flagellin
Lawsonia intracellularis PHE/MN1-00 LI0570 -56 4.2 ATTGGTATATCCATTGCAT
Position: -40
Score: 4.3
Sequence: TTTGGATCGTTTATTGCAT
Locus tag: LI0627
LI0627 -40 4.3 TTTGGATCGTTTATTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpxC
Ortholog function: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
Desulfohalobium retbaense DSM 5692 Dret_2081 -40 4.9 CGTGGAATGATTTTTGCTT
Desulfomicrobium baculatum DSM 4028 Dbac_2789 -29 4.4 TCTGGCATGAAGTTTGATA
Desulfovibrio desulfuricans G20 Dde_2986 -41 4.8 AACGGCACGATTATTGCTT
Desulfovibrio salexigens DSM 2638 Desal_2604 -43 4.6 GATGGCATATTATTTGCTG
Desulfovibrio vulgaris Hildenborough DVU2917 -196 4 GACGGCAAGCCGCCTGCTG
-40 5.3 TCTGGCACATCTTTTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_1446 -38 5.3 TTTGGCACGGTTCATGCTC
Lawsonia intracellularis PHE/MN1-00 LI0627 -40 4.3 TTTGGATCGTTTATTGCAT
Position: -80
Score: 5.1
Sequence: TTTGGCATGTGCATTGCTT
Locus tag: LI0700
LI0700 -80 5.1 TTTGGCATGTGCATTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0318
Ortholog function: TPR repeat-containing protein
Desulfomicrobium baculatum DSM 4028 Dbac_3025 -73 4.2 GGTGGCATCAAAGTTGCTA
Desulfovibrio vulgaris Hildenborough DVU0318 -115 4.9 TTGGGCATGGCGCTTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2283 -211 4.6 CGTGGCACATGGTTTGCTA
-158 4.7 AATGGCACGCATAGTGCTA
Lawsonia intracellularis PHE/MN1-00 LI0700 -80 5.1 TTTGGCATGTGCATTGCTT
Position: -147
Score: 4.6
Sequence: CTTGGTATAACTTTTGCTA
Locus tag: LI0740
LI0740 -147 4.6 CTTGGTATAACTTTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: flgF
Ortholog function: Flagellar basal-body rod protein FlgF
Desulfohalobium retbaense DSM 5692 Dret_0593 -92 4.2 GACGGAACGGTATTTGCCC
Desulfomicrobium baculatum DSM 4028 Dbac_2410 -46 4.8 ACTGGCCTGGTATTTGCTC
Desulfovibrio desulfuricans G20 Dde_3159 -66 4.9 GCTGGCCCGCATGTTGCAT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0391 -101 5.3 TTTGGCCCGCACTTTGCAT
Desulfovibrio magneticus RS-1 DMR_31570 -46 4.8 GCTGGCCCGCATGTTGCAA
Desulfovibrio salexigens DSM 2638 Desal_1008 -71 5 TTTGGCCTGCACTTTGCAA
Desulfovibrio vulgaris Hildenborough DVU0512 -68 4.1 CGTGGTCTGCATATTGCAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2517 -58 4.5 TGTGGCCCATGCCTTGCAA
Lawsonia intracellularis PHE/MN1-00 LI0740 -147 4.6 CTTGGTATAACTTTTGCTA
Position: -137
Score: 3.7
Sequence: TCTGGCATAAAAGCTGATT
Position: -62
Score: 3.8
Sequence: TTTGGTATAAAAGCTGCAT
Locus tag: LI0746
LI0746 -137 3.7 TCTGGCATAAAAGCTGATT
-62 3.8 TTTGGTATAAAAGCTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0518
Ortholog function: FlgN family protein
Desulfomicrobium baculatum DSM 4028 Dbac_2404 -106 4 ACTGGTCGGGATTTTGCAA
Desulfovibrio desulfuricans G20 Dde_3153 -164 4.1 GCTGGCAGGAAAATTGCTG
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_2002 -84 4.4 CGAGGCACGGAAATTGCTT
Desulfovibrio magneticus RS-1 DMR_31510 -71 4.7 ACTGGCCCGCAATTTGCCT
Desulfovibrio salexigens DSM 2638 Desal_1015 -104 4.5 ATTGGCAAGAAACTTGCTG
Desulfovibrio vulgaris Hildenborough DVU0518 -68 4.1 CGTGGTCTGCATATTGCAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2523 -220 4.4 ACTGGCACGGTGTTGGCAA
-150 3.8 TGCGGAATGCTTGTTTCTT
Lawsonia intracellularis PHE/MN1-00 LI0746 -62 3.8 TTTGGTATAAAAGCTGCAT
Position: -108
Score: 4.4
Sequence: ATAGGCATGCAGATTGCAT
Locus tag: LI0856
LI0856 -108 4.4 ATAGGCATGCAGATTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fliG
Ortholog function: Flagellar motor switch protein FliG
Desulfohalobium retbaense DSM 5692 Dret_0570 -290 4.5 ATTGGAGCACTTTTTGCTC
-130 4.7 TATGGCGTGGTATTTGCAT
Desulfomicrobium baculatum DSM 4028 Dbac_3030 -91 4.7 TCTGGAATGGTCATTGCAA
Desulfovibrio desulfuricans G20 Dde_0352 -75 4.9 CATGGAACACACCTTGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1571 -79 4.5 TTAGGCATGAATGTTGCTA
Desulfovibrio magneticus RS-1 DMR_45060 -82 4.9 GCTGGAACGCTTTTTGCCC
Desulfovibrio salexigens DSM 2638 Desal_1152 -50 4.8 AATGGCCCACCATTTGCTT
Desulfovibrio vulgaris Hildenborough DVU0312 -91 4.9 CGTGGAACCCTTTTTGCTT
Lawsonia intracellularis PHE/MN1-00 LI0856 -108 4.4 ATAGGCATGCAGATTGCAT
Position: -68
Score: 5
Sequence: TATGGCATATGTTTTGCTT
Locus tag: LI0860
LI0860 -68 5 TATGGCATATGTTTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: flgB
Ortholog function: Flagellar basal-body rod protein FlgB
Desulfohalobium retbaense DSM 5692 Dret_0653 -159 3.5 TAGGGCTCAGGTGTTGCCT
Desulfomicrobium baculatum DSM 4028 Dbac_3026 -91 4.7 TCTGGAATGGTCATTGCAA
Desulfovibrio desulfuricans G20 Dde_0356 -75 4.9 CATGGAACACACCTTGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1576 -59 4.8 TTTGGAACAAATGTTGCTT
Desulfovibrio magneticus RS-1 DMR_45020 -82 4.9 GCTGGAACGCTTTTTGCCC
Desulfovibrio salexigens DSM 2638 Desal_1156 -96 4.9 AATGGAACACCTTTTGCTA
Desulfovibrio vulgaris Hildenborough DVU0316 -91 4.9 CGTGGAACCCTTTTTGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2284 -106 4.8 GCTGGAACACCTCTTGCTG
Lawsonia intracellularis PHE/MN1-00 LI0860 -68 5 TATGGCATATGTTTTGCTT
Position: -53
Score: 5.3
Sequence: CTTGGCAAGCTTTTTGCTT
Locus tag: LI0887
LI0887 -53 5.3 CTTGGCAAGCTTTTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1032
Ortholog function: hypothetical protein
Desulfomicrobium baculatum DSM 4028 Dbac_2476 -47 5 CTTGGCAGGGACTTTGCTT
Desulfovibrio desulfuricans G20 Dde_1455 -54 4.7 GTTGGCAGACTTATTGCTA
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0763 -59 4.6 CTTGGCAGCATTTTTGCAT
Desulfovibrio magneticus RS-1 DMR_39260 -52 5.1 TCTGGCAGGTTTTTTGCTT
Desulfovibrio salexigens DSM 2638 Desal_0181 -54 5 TTTGGCAAGGTCATTGCAT
Desulfovibrio vulgaris Hildenborough DVU1032 -52 4.8 GGTGGCGTGCTTCTTGCTC
Desulfovibrio vulgaris str. Miyazaki F DvMF_0905 -38 5.1 CATGGCAGGGTTCTTGCTT
Lawsonia intracellularis PHE/MN1-00 LI0887 -53 5.3 CTTGGCAAGCTTTTTGCTT
Position: -60
Score: 3.5
Sequence: AATAGTATGAATATTGCAT
Locus tag: LI0899
LI0899 -60 3.5 AATAGTATGAATATTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1880
Ortholog function: hypothetical protein
Desulfovibrio desulfuricans G20 Dde_1654 -87 4.8 GGTGGCATGCTTTATGCTC
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1559 -66 4.4 TATGGACCATATTTTGCAT
Desulfovibrio vulgaris Hildenborough DVU1880 -68 5 ATTGGCATGATTCATGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_0574 -68 4.4 GCTGGCATGGGCGATGCAT
Lawsonia intracellularis PHE/MN1-00 LI0899 -60 3.5 AATAGTATGAATATTGCAT
Position: -73
Score: 4.3
Sequence: TTAGGAATATTTTTTGCAT
Locus tag: LI1060
LI1060 -73 4.3 TTAGGAATATTTTTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fliJ
Ortholog function: Flagellar biosynthesis chaperone FliJ
Desulfohalobium retbaense DSM 5692 Dret_0573 -290 4.5 ATTGGAGCACTTTTTGCTC
-130 4.7 TATGGCGTGGTATTTGCAT
Desulfomicrobium baculatum DSM 4028 Dbac_2249 -29 4.5 TTGTGCACGCTTTTTGCTA
Desulfovibrio desulfuricans G20 Dde_2705 -112 5.1 TCTGGCCTGATCTTTGCTT
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0698 -119 3.9 CGTGGCATGGTGGCTGCGC
-63 5 CTTGGCCCGCTGTTTGCAC
Desulfovibrio magneticus RS-1 DMR_42100 -58 4.7 ACTGGCCCGTGTCTTGCAA
Desulfovibrio vulgaris Hildenborough DVU0913 -72 4.6 AACGGCCCGTTCCTTGCTA
Desulfovibrio vulgaris str. Miyazaki F DvMF_1393 -93 4.8 TTCGGCCCGGTATTTGCTA
Lawsonia intracellularis PHE/MN1-00 LI1060 -73 4.3 TTAGGAATATTTTTTGCAT
Position: -151
Score: 4.6
Sequence: ATTGGTATACTCTTTGCTG
Locus tag: LI1156
LI1156 -151 4.6 ATTGGTATACTCTTTGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_2421
Ortholog function: hypothetical protein
Desulfovibrio piger ATCC 29098 DESPIG_00157 -59 4.6 CATGGTACGTTTTATGCTT
Desulfovibrio piger ATCC 29098 DESPIG_00158 -59 4.6 CATGGTACGTTTTATGCTT
Desulfovibrio piger ATCC 29098 DESPIG_00691 -54 5.2 CATGGCACGCTTTATGCTT
Desulfovibrio piger ATCC 29098 DESPIG_00692 -54 5.2 CATGGCACGCTTTATGCTT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2421 -56 4.6 TTTGGCATCCTTGCTGCAA
Lawsonia intracellularis PHE/MN1-00 LI1156 -151 4.6 ATTGGTATACTCTTTGCTG
Position: -193
Score: 4.7
Sequence: TTTGGCATAGTCTCTGCAG
Locus tag: LI1157
LI1157 -193 4.7 TTTGGCATAGTCTCTGCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_2422
Ortholog function: Type III secretion chaperone protein for YopD (SycD)
Lawsonia intracellularis PHE/MN1-00 LI1157 -193 4.7 TTTGGCATAGTCTCTGCAG
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