Propagation of RpoN regulog to Lawsonia intracellularis PHE/MN1-00
| Source regulog: | RpoN - Desulfovibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | Sigma54 |
| Regulation mode: | |
| Biological process: | Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism |
| Effector: | |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Lawsonia intracellularis PHE/MN1-00 |
| Orthologous TF(s) | LI0457 |
| Regulated genes | 21 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -57
Score: 4.4 Sequence: TTAGGCATAGTTTTTGATT
Locus tag: LI0277
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| LI0277 | -57 | 4.4 | TTAGGCATAGTTTTTGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU3020 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfovibrio desulfuricans G20 | Dde_3230 | -95 | 4.4 | AATGGCAGAACCTTTGCAT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0695 | -76 | 4.9 | TTTGGCAAGACCTTTGCAT |
| Desulfovibrio magneticus RS-1 | DMR_25570 | -89 | 5 | CTTGGCAGGCTCTTTGCTA |
| Desulfovibrio vulgaris Hildenborough | DVU3020 | -56 | 5.1 | CATGGCATGTGCCTTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1856 | -71 | 4.7 | CTCGGCAAGGCTCTTGCAT |
| Lawsonia intracellularis PHE/MN1-00 | LI0277 | -57 | 4.4 | TTAGGCATAGTTTTTGATT |
|
Position: -77
Score: 5.2 Sequence: CTTGGCATGGCTTCTGCTT
Locus tag: LI0348
|
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| LI0348 | -77 | 5.2 | CTTGGCATGGCTTCTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flgE | ||||
| Ortholog function: Flagellar hook protein FlgE | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_1614 | -84 | 4.1 | CATGGACCCATTCCTGCAT |
| Desulfovibrio desulfuricans G20 | Dde_0298 | -86 | 5.3 | TCTGGCACGGTCCATGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_2091 | -76 | 5.3 | TCTGGCACGCTCTCTGCAT |
| Desulfovibrio salexigens DSM 2638 | Desal_2938 | -115 | 5.2 | TTAGGCACGCCCCTTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU0307 | -59 | 5.3 | TCTGGCACGGCTCGTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1808 | -128 | 5.2 | GCTGGCACGGCTCGTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0348 | -77 | 5.2 | CTTGGCATGGCTTCTGCTT |
|
Position: -62
Score: 3.9 Sequence: TAAGGCCTAAAATTTGCAT
Locus tag: LI0507
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| LI0507 | -62 | 3.9 | TAAGGCCTAAAATTTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU3387 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_1772 | -70 | 4.4 | GCTGGCCCGAAATCTGCTA |
| Desulfovibrio desulfuricans G20 | Dde_0108 | -57 | 4.2 | ATCGGCACTATGGTTGCTA |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0311 | -61 | 4.8 | CTTGGCACTGTACTTGCTG |
| Desulfovibrio magneticus RS-1 | DMR_05460 | -13 | 4.1 | GTCGGCACAAGGGTTGCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_2614 | -59 | 4.3 | GTTGGTACGTTTGCTGCAA |
| Desulfovibrio vulgaris Hildenborough | DVU3387 | -92 | 4.1 | GCAGGTGCGGTTCTTGCTA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2067 | -67 | 5 | GCTGGCATTCCCCTTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0507 | -62 | 3.9 | TAAGGCCTAAAATTTGCAT |
|
Position: -44
Score: 4.5 Sequence: TTTGGAACACTCCTTGTAC
Locus tag: LI0568
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| LI0568 | -44 | 4.5 | TTTGGAACACTCCTTGTAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fliK | ||||
| Ortholog function: Flagellar hook-length control protein FliK | ||||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1259 | -43 | 4.6 | TTTGGAACACTCTTTGTAT |
| Desulfovibrio vulgaris Hildenborough | DVU1445 | -82 | 3.9 | TATGGCGCGGGAAATGCAA |
| -43 | 4.5 | ATTGGAACACTCCTTGTAT | ||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0248 | -44 | 4.7 | TTTGGAACGGTCCTTGTAA |
| Lawsonia intracellularis PHE/MN1-00 | LI0568 | -44 | 4.5 | TTTGGAACACTCCTTGTAC |
|
Position: -56
Score: 4.2 Sequence: ATTGGTATATCCATTGCAT
Locus tag: LI0570
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| LI0570 | -56 | 4.2 | ATTGGTATATCCATTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fliC | ||||
| Ortholog function: flagellin | ||||
| Lawsonia intracellularis PHE/MN1-00 | LI0570 | -56 | 4.2 | ATTGGTATATCCATTGCAT |
|
Position: -40
Score: 4.3 Sequence: TTTGGATCGTTTATTGCAT
Locus tag: LI0627
|
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| LI0627 | -40 | 4.3 | TTTGGATCGTTTATTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpxC | ||||
| Ortholog function: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2081 | -40 | 4.9 | CGTGGAATGATTTTTGCTT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2789 | -29 | 4.4 | TCTGGCATGAAGTTTGATA |
| Desulfovibrio desulfuricans G20 | Dde_2986 | -41 | 4.8 | AACGGCACGATTATTGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_2604 | -43 | 4.6 | GATGGCATATTATTTGCTG |
| Desulfovibrio vulgaris Hildenborough | DVU2917 | -196 | 4 | GACGGCAAGCCGCCTGCTG |
| -40 | 5.3 | TCTGGCACATCTTTTGCTT | ||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1446 | -38 | 5.3 | TTTGGCACGGTTCATGCTC |
| Lawsonia intracellularis PHE/MN1-00 | LI0627 | -40 | 4.3 | TTTGGATCGTTTATTGCAT |
|
Position: -80
Score: 5.1 Sequence: TTTGGCATGTGCATTGCTT
Locus tag: LI0700
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| LI0700 | -80 | 5.1 | TTTGGCATGTGCATTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0318 | ||||
| Ortholog function: TPR repeat-containing protein | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3025 | -73 | 4.2 | GGTGGCATCAAAGTTGCTA |
| Desulfovibrio vulgaris Hildenborough | DVU0318 | -115 | 4.9 | TTGGGCATGGCGCTTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2283 | -211 | 4.6 | CGTGGCACATGGTTTGCTA |
| -158 | 4.7 | AATGGCACGCATAGTGCTA | ||
| Lawsonia intracellularis PHE/MN1-00 | LI0700 | -80 | 5.1 | TTTGGCATGTGCATTGCTT |
|
Position: -147
Score: 4.6 Sequence: CTTGGTATAACTTTTGCTA
Locus tag: LI0740
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| LI0740 | -147 | 4.6 | CTTGGTATAACTTTTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flgF | ||||
| Ortholog function: Flagellar basal-body rod protein FlgF | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0593 | -92 | 4.2 | GACGGAACGGTATTTGCCC |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2410 | -46 | 4.8 | ACTGGCCTGGTATTTGCTC |
| Desulfovibrio desulfuricans G20 | Dde_3159 | -66 | 4.9 | GCTGGCCCGCATGTTGCAT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0391 | -101 | 5.3 | TTTGGCCCGCACTTTGCAT |
| Desulfovibrio magneticus RS-1 | DMR_31570 | -46 | 4.8 | GCTGGCCCGCATGTTGCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_1008 | -71 | 5 | TTTGGCCTGCACTTTGCAA |
| Desulfovibrio vulgaris Hildenborough | DVU0512 | -68 | 4.1 | CGTGGTCTGCATATTGCAA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2517 | -58 | 4.5 | TGTGGCCCATGCCTTGCAA |
| Lawsonia intracellularis PHE/MN1-00 | LI0740 | -147 | 4.6 | CTTGGTATAACTTTTGCTA |
|
Position: -137
Score: 3.7 Sequence: TCTGGCATAAAAGCTGATT
Position: -62
Score: 3.8 Sequence: TTTGGTATAAAAGCTGCAT
Locus tag: LI0746
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| LI0746 | -137 | 3.7 | TCTGGCATAAAAGCTGATT | |
| -62 | 3.8 | TTTGGTATAAAAGCTGCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0518 | ||||
| Ortholog function: FlgN family protein | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_2404 | -106 | 4 | ACTGGTCGGGATTTTGCAA |
| Desulfovibrio desulfuricans G20 | Dde_3153 | -164 | 4.1 | GCTGGCAGGAAAATTGCTG |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_2002 | -84 | 4.4 | CGAGGCACGGAAATTGCTT |
| Desulfovibrio magneticus RS-1 | DMR_31510 | -71 | 4.7 | ACTGGCCCGCAATTTGCCT |
| Desulfovibrio salexigens DSM 2638 | Desal_1015 | -104 | 4.5 | ATTGGCAAGAAACTTGCTG |
| Desulfovibrio vulgaris Hildenborough | DVU0518 | -68 | 4.1 | CGTGGTCTGCATATTGCAA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2523 | -220 | 4.4 | ACTGGCACGGTGTTGGCAA |
| -150 | 3.8 | TGCGGAATGCTTGTTTCTT | ||
| Lawsonia intracellularis PHE/MN1-00 | LI0746 | -62 | 3.8 | TTTGGTATAAAAGCTGCAT |
|
Position: -108
Score: 4.4 Sequence: ATAGGCATGCAGATTGCAT
Locus tag: LI0856
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| LI0856 | -108 | 4.4 | ATAGGCATGCAGATTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fliG | ||||
| Ortholog function: Flagellar motor switch protein FliG | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0570 | -290 | 4.5 | ATTGGAGCACTTTTTGCTC |
| -130 | 4.7 | TATGGCGTGGTATTTGCAT | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3030 | -91 | 4.7 | TCTGGAATGGTCATTGCAA |
| Desulfovibrio desulfuricans G20 | Dde_0352 | -75 | 4.9 | CATGGAACACACCTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1571 | -79 | 4.5 | TTAGGCATGAATGTTGCTA |
| Desulfovibrio magneticus RS-1 | DMR_45060 | -82 | 4.9 | GCTGGAACGCTTTTTGCCC |
| Desulfovibrio salexigens DSM 2638 | Desal_1152 | -50 | 4.8 | AATGGCCCACCATTTGCTT |
| Desulfovibrio vulgaris Hildenborough | DVU0312 | -91 | 4.9 | CGTGGAACCCTTTTTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0856 | -108 | 4.4 | ATAGGCATGCAGATTGCAT |
|
Position: -68
Score: 5 Sequence: TATGGCATATGTTTTGCTT
Locus tag: LI0860
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| LI0860 | -68 | 5 | TATGGCATATGTTTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flgB | ||||
| Ortholog function: Flagellar basal-body rod protein FlgB | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0653 | -159 | 3.5 | TAGGGCTCAGGTGTTGCCT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3026 | -91 | 4.7 | TCTGGAATGGTCATTGCAA |
| Desulfovibrio desulfuricans G20 | Dde_0356 | -75 | 4.9 | CATGGAACACACCTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1576 | -59 | 4.8 | TTTGGAACAAATGTTGCTT |
| Desulfovibrio magneticus RS-1 | DMR_45020 | -82 | 4.9 | GCTGGAACGCTTTTTGCCC |
| Desulfovibrio salexigens DSM 2638 | Desal_1156 | -96 | 4.9 | AATGGAACACCTTTTGCTA |
| Desulfovibrio vulgaris Hildenborough | DVU0316 | -91 | 4.9 | CGTGGAACCCTTTTTGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2284 | -106 | 4.8 | GCTGGAACACCTCTTGCTG |
| Lawsonia intracellularis PHE/MN1-00 | LI0860 | -68 | 5 | TATGGCATATGTTTTGCTT |
|
Position: -53
Score: 5.3 Sequence: CTTGGCAAGCTTTTTGCTT
Locus tag: LI0887
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| LI0887 | -53 | 5.3 | CTTGGCAAGCTTTTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU1032 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfomicrobium baculatum DSM 4028 | Dbac_2476 | -47 | 5 | CTTGGCAGGGACTTTGCTT |
| Desulfovibrio desulfuricans G20 | Dde_1455 | -54 | 4.7 | GTTGGCAGACTTATTGCTA |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0763 | -59 | 4.6 | CTTGGCAGCATTTTTGCAT |
| Desulfovibrio magneticus RS-1 | DMR_39260 | -52 | 5.1 | TCTGGCAGGTTTTTTGCTT |
| Desulfovibrio salexigens DSM 2638 | Desal_0181 | -54 | 5 | TTTGGCAAGGTCATTGCAT |
| Desulfovibrio vulgaris Hildenborough | DVU1032 | -52 | 4.8 | GGTGGCGTGCTTCTTGCTC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0905 | -38 | 5.1 | CATGGCAGGGTTCTTGCTT |
| Lawsonia intracellularis PHE/MN1-00 | LI0887 | -53 | 5.3 | CTTGGCAAGCTTTTTGCTT |
|
Position: -60
Score: 3.5 Sequence: AATAGTATGAATATTGCAT
Locus tag: LI0899
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| LI0899 | -60 | 3.5 | AATAGTATGAATATTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU1880 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfovibrio desulfuricans G20 | Dde_1654 | -87 | 4.8 | GGTGGCATGCTTTATGCTC |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1559 | -66 | 4.4 | TATGGACCATATTTTGCAT |
| Desulfovibrio vulgaris Hildenborough | DVU1880 | -68 | 5 | ATTGGCATGATTCATGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0574 | -68 | 4.4 | GCTGGCATGGGCGATGCAT |
| Lawsonia intracellularis PHE/MN1-00 | LI0899 | -60 | 3.5 | AATAGTATGAATATTGCAT |
|
Position: -73
Score: 4.3 Sequence: TTAGGAATATTTTTTGCAT
Locus tag: LI1060
|
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| LI1060 | -73 | 4.3 | TTAGGAATATTTTTTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fliJ | ||||
| Ortholog function: Flagellar biosynthesis chaperone FliJ | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0573 | -290 | 4.5 | ATTGGAGCACTTTTTGCTC |
| -130 | 4.7 | TATGGCGTGGTATTTGCAT | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_2249 | -29 | 4.5 | TTGTGCACGCTTTTTGCTA |
| Desulfovibrio desulfuricans G20 | Dde_2705 | -112 | 5.1 | TCTGGCCTGATCTTTGCTT |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0698 | -119 | 3.9 | CGTGGCATGGTGGCTGCGC |
| -63 | 5 | CTTGGCCCGCTGTTTGCAC | ||
| Desulfovibrio magneticus RS-1 | DMR_42100 | -58 | 4.7 | ACTGGCCCGTGTCTTGCAA |
| Desulfovibrio vulgaris Hildenborough | DVU0913 | -72 | 4.6 | AACGGCCCGTTCCTTGCTA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1393 | -93 | 4.8 | TTCGGCCCGGTATTTGCTA |
| Lawsonia intracellularis PHE/MN1-00 | LI1060 | -73 | 4.3 | TTAGGAATATTTTTTGCAT |
|
Position: -151
Score: 4.6 Sequence: ATTGGTATACTCTTTGCTG
Locus tag: LI1156
|
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| LI1156 | -151 | 4.6 | ATTGGTATACTCTTTGCTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DvMF_2421 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfovibrio piger ATCC 29098 | DESPIG_00157 | -59 | 4.6 | CATGGTACGTTTTATGCTT |
| Desulfovibrio piger ATCC 29098 | DESPIG_00158 | -59 | 4.6 | CATGGTACGTTTTATGCTT |
| Desulfovibrio piger ATCC 29098 | DESPIG_00691 | -54 | 5.2 | CATGGCACGCTTTATGCTT |
| Desulfovibrio piger ATCC 29098 | DESPIG_00692 | -54 | 5.2 | CATGGCACGCTTTATGCTT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2421 | -56 | 4.6 | TTTGGCATCCTTGCTGCAA |
| Lawsonia intracellularis PHE/MN1-00 | LI1156 | -151 | 4.6 | ATTGGTATACTCTTTGCTG |
|
Position: -193
Score: 4.7 Sequence: TTTGGCATAGTCTCTGCAG
Locus tag: LI1157
|
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| LI1157 | -193 | 4.7 | TTTGGCATAGTCTCTGCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DvMF_2422 | ||||
| Ortholog function: Type III secretion chaperone protein for YopD (SycD) | ||||
| Lawsonia intracellularis PHE/MN1-00 | LI1157 | -193 | 4.7 | TTTGGCATAGTCTCTGCAG |