Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NifA-1 regulog to Desulfovibrio vulgaris str. Miyazaki F

Reference regulog properties
Source regulog: NifA-1 - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process: Nitrogen assimilation
Effector:
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio vulgaris str. Miyazaki F
Orthologous TF(s) DvMF_0608
Regulated genes 10
Built upon 101 sites [see more]
Predicted regulatory interactions in Desulfovibrio vulgaris str. Miyazaki F
Locus tag Position Score Sequence
Position: -270
Score: 3.4
Sequence: TTGACGATTTTGCACG
Locus tag: DvMF_0546
DvMF_0546 -270 3.4 TTGACGATTTTGCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB-1
Ortholog function: Glutamate synthase, large subunit (gltB-1)
Desulfovibrio desulfuricans G20 Dde_1814 -254 4.9 ATTACAAAATTGTAAT
-208 3.7 TTCTCAAAAATATAAA
-46 4.2 TAAACATTTTTGTCAC
Desulfovibrio vulgaris Hildenborough DVU1823 -240 4.1 GTCTCAAAATTGTAAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_0546 -403 3.5 AGAACAAAAATGTTAT
Position: -92
Score: 4.8
Sequence: TTGACATTTCTGTAAT
Locus tag: DvMF_0611
DvMF_0611 -92 4.8 TTGACATTTCTGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1952
Ortholog function: hypothetical protein
Desulfovibrio desulfuricans G20 Dde_1634 -99 4.9 TTGACATTTCTGTAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_0611 -92 4.8 TTGACATTTCTGTAAT
Position: -208
Score: 4.1
Sequence: TTTACAAAAAAGAAAC
Position: -176
Score: 4.3
Sequence: GTTACCAAAATGGAAA
Position: -175
Score: 3.9
Sequence: TTACCAAAATGGAAAA
Locus tag: DvMF_0866
DvMF_0866 -208 4.1 TTTACAAAAAAGAAAC
-176 4.3 GTTACCAAAATGGAAA
-175 3.9 TTACCAAAATGGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692 Dret_2267 -173 3.9 GTAACAAATTTGTCCA
-132 4.2 ATGCCATTTTTGACAA
Desulfomicrobium baculatum DSM 4028 Dbac_3048 -387 4.5 TTTTCAATTTTGGAAG
Desulfovibrio desulfuricans G20 Dde_2311 -207 3.7 TTAACAAAATTGTGTT
-175 4.3 ATAACAAATATGTATA
Desulfovibrio magneticus RS-1 DMR_34890 -158 4.4 GTTGCAAAAATGTCAA
Desulfovibrio salexigens DSM 2638 Desal_3438 -204 4 TTTCCAATTATGTTTT
-153 4 TTTTCAGTTTTGGCAC
-91 3.7 TGTCTAAAATTGTAAA
-50 4 GAGACGAAATTGTAAA
Desulfovibrio vulgaris Hildenborough DVU1231 -159 3.9 ACGACAAAAATGCAAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_0866 -208 4.1 TTTACAAAAAAGAAAC
-176 4.3 GTTACCAAAATGGAAA
-175 3.9 TTACCAAAATGGAAAA
Position: -54
Score: 4
Sequence: GAAACAAATTTGTAAG
Locus tag: DvMF_1590
DvMF_1590 -54 4 GAAACAAATTTGTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnN
Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Desulfomicrobium baculatum DSM 4028 Dbac_1496 -328 4 TTGACATTTATGTGCA
-208 4.6 TTTGCAAATTTGTAAT
-155 4.5 ATTTCAAAAATGTAAT
Desulfovibrio desulfuricans G20 Dde_0102 -216 4.1 TTAACAAAAAAGTTAA
-174 4.7 TAAACATTTATGTAAA
Desulfovibrio magneticus RS-1 DMR_10730 -335 3.7 TTGACACAATTGTTTC
-236 4.4 TTTACATTATTGCTAG
Desulfovibrio salexigens DSM 2638 Desal_2290 -276 4.7 TATACAATTTTGTAAC
-225 4.8 ATTACATTTTTGTAAC
-182 4.6 TCTACATTTTTGTAAG
Desulfovibrio vulgaris Hildenborough DVU1258 -411 4.3 TTTACATATTTGATAC
-275 4.7 TATACATTTTTGGAAA
-230 4.6 ATTACAATAGTGTCAA
-178 4.3 TTTACTATTTTGAAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_1590 -332 3.9 GTTACAAGTTTGCAAA
-288 3.9 TGAACGAATTTGTAAA
-54 4 GAAACAAATTTGTAAG
Position: -203
Score: 4.9
Sequence: TTTACAATGATGTCAA
Locus tag: DvMF_2099
DvMF_2099 -203 4.9 TTTACAATGATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Desulfohalobium retbaense DSM 5692 Dret_2389 -182 4.5 TTTTCGTTTTTGTCAA
-173 3.9 TTGTCAATATTGGATC
-141 5 TTGACAAAAATGAAAA
Desulfomicrobium baculatum DSM 4028 Dbac_2819 -89 4.6 TTTCCAATTTTGCAAA
Desulfovibrio desulfuricans G20 Dde_0104 -140 4 TTTGCAAAAATGTGAT
Desulfovibrio vulgaris Hildenborough DVU3392 -176 3.9 TGAACAACATTGTCAA
-135 4.8 CTTCCAATAATGTAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_2099 -203 4.9 TTTACAATGATGTCAA
Position: -176
Score: 4.1
Sequence: GTGGCAAAAATGTAAT
Position: -153
Score: 4.2
Sequence: AGTACAAATATGTAAT
Position: -101
Score: 3.8
Sequence: TTGCCGTTTTTGGAAT
Locus tag: DvMF_2387
DvMF_2387 -176 4.1 GTGGCAAAAATGTAAT
-153 4.2 AGTACAAATATGTAAT
-101 3.8 TTGCCGTTTTTGGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU3290
Ortholog function: putative glutamate synthase, large subunit (domain 1)
Desulfomicrobium baculatum DSM 4028 Dbac_1372 -117 4.4 TCTACATTTTTGTCAT
-75 4.3 ATGACATTTCTGTCAT
Desulfovibrio salexigens DSM 2638 Desal_3280 -339 3.9 TTGCCAAAATTGTTTT
Desulfovibrio vulgaris Hildenborough DVU3290 -230 4.2 TAGACAAAAATGTTAC
-178 4 TTGCCATTTTTGATAT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2387 -176 4.1 GTGGCAAAAATGTAAT
-153 4.2 AGTACAAATATGTAAT
-101 3.8 TTGCCGTTTTTGGAAT
Position: -138
Score: 4.4
Sequence: TTTCGATAATTGTAAA
Locus tag: DvMF_2528
DvMF_2528 -138 4.4 TTTCGATAATTGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifA-2
Ortholog function: transcriptional regulator, NifA, Fis Family
Desulfovibrio salexigens DSM 2638 Desal_0518 -138 4.2 TTTCCATTAATGTTCA
-108 4.8 TTTACATAAATGTGAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2528 -170 3.6 TATTCAAAAATGGTAT
-138 4.4 TTTCGATAATTGTAAA
Position: -305
Score: 4.1
Sequence: CTGACAATTTCGCAAA
Position: -177
Score: 4.2
Sequence: GAAACATTAATGTCAA
Locus tag: DvMF_2788
DvMF_2788 -305 4.1 CTGACAATTTCGCAAA
-177 4.2 GAAACATTAATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0751
Ortholog function: amino acid ABC transporter, ATP-binding protein
Desulfovibrio desulfuricans G20 Dde_2763 -139 4.5 ATAACAAATTTGTAAT
Desulfovibrio salexigens DSM 2638 Desal_3370 -153 3.6 TTAACAAAAATGATTT
-9 3.6 TGTACAAAAGTGATAA
Desulfovibrio vulgaris Hildenborough DVU0753 -246 4.1 TTGACGTTTTTGAAAT
-106 4.8 ATGACAGTTTTGTAAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_2788 -305 4.1 CTGACAATTTCGCAAA
-177 4.2 GAAACATTAATGTCAA
Position: -340
Score: 4.6
Sequence: TTTACGTTTTTGTTAA
Position: -67
Score: 4.7
Sequence: CTGACAATATGGTAAA
Locus tag: DvMF_3151
DvMF_3151 -340 4.6 TTTACGTTTTTGTTAA
-67 4.7 CTGACAATATGGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: ABC-type polar amino acid transport system, ATPase component
Desulfovibrio desulfuricans G20 Dde_1428 -253 5.1 TTTACAATTATGTAAC
-59 3.7 TTGACAATTTTGAGCA
23 3.5 TATTCATAAATGGTAC
Desulfovibrio salexigens DSM 2638 Desal_1519 -358 3.9 TTGTCTTTTTTGTATA
-197 4.5 TGTACATAAATGGAAA
Desulfovibrio vulgaris Hildenborough DVU2343 -403 3.7 TTGTCTTGTTTGTAAA
-248 4.1 ATTACTTTTTTGTCAC
Desulfovibrio vulgaris str. Miyazaki F DvMF_3151 -340 4.6 TTTACGTTTTTGTTAA
-67 4.7 CTGACAATATGGTAAA