Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NifA-1 regulog to Desulfohalobium retbaense DSM 5692

Reference regulog properties
Source regulog: NifA-1 - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process: Nitrogen assimilation
Effector:
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfohalobium retbaense DSM 5692
Orthologous TF(s) Dret_0831
Regulated genes 6
Built upon 101 sites [see more]
Predicted regulatory interactions in Desulfohalobium retbaense DSM 5692
Locus tag Position Score Sequence
Position: -151
Score: 5
Sequence: TTTTCAATTTTGTCAA
Locus tag: Dret_0113
Dret_0113 -151 5 TTTTCAATTTTGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB2
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692 Dret_0113 -393 3.9 GTTTCAGAAATGGAAG
-270 4.5 ATTCCATTTTTGTAAC
-151 5 TTTTCAATTTTGTCAA
Desulfomicrobium baculatum DSM 4028 Dbac_3049 -284 4.5 CTTCCAAAATTGAAAA
-176 4.7 TATACATAAATGTTAA
-64 3.7 TTAACAACTTTGGCAC
Desulfovibrio desulfuricans G20 Dde_3492 -192 4.9 TTTACTTTTTTGTAAA
-160 5.2 TTGACATATATGTCAA
Desulfovibrio salexigens DSM 2638 Desal_3066 -289 4.4 CTGAAAAAATTGTCAA
-185 4.7 TTTACCTTTTTGTAAT
-134 4.4 AATACATTTTTGTAAT
Position: -103
Score: 3.8
Sequence: TTGACGAAAACGTATA
Position: -87
Score: 4.6
Sequence: TTTACATTTTCGTAAC
Locus tag: Dret_0402
Dret_0402 -103 3.8 TTGACGAAAACGTATA
-87 4.6 TTTACATTTTCGTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0671
Ortholog function: Ferredoxin-dependent glutamate synthase
Desulfohalobium retbaense DSM 5692 Dret_0402 -87 4.6 TTTACATTTTCGTAAC
Desulfovibrio desulfuricans G20 Dde_1218 -353 4.7 TTGACGTTTATGTCAA
-198 3.7 ATTGCATTTTTCTCAA
Desulfovibrio salexigens DSM 2638 Desal_3587 -194 3.8 TTACAAATATTGTTAA
-92 4.8 TTTACAATATTGATAA
-35 4.3 CTAACAGTATTGAAAA
Desulfovibrio vulgaris Hildenborough DVU0671 -355 4.8 GTTACATTTTTGTAAT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2665 -369 3.7 TTCGCGAAATTGTAAA
Position: -173
Score: 3.9
Sequence: GTAACAAATTTGTCCA
Position: -132
Score: 4.2
Sequence: ATGCCATTTTTGACAA
Locus tag: Dret_2267
Dret_2267 -173 3.9 GTAACAAATTTGTCCA
-132 4.2 ATGCCATTTTTGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Desulfohalobium retbaense DSM 5692 Dret_2267 -173 3.9 GTAACAAATTTGTCCA
-132 4.2 ATGCCATTTTTGACAA
Desulfomicrobium baculatum DSM 4028 Dbac_3048 -387 4.5 TTTTCAATTTTGGAAG
Desulfovibrio desulfuricans G20 Dde_2311 -207 3.7 TTAACAAAATTGTGTT
-175 4.3 ATAACAAATATGTATA
Desulfovibrio magneticus RS-1 DMR_34890 -158 4.4 GTTGCAAAAATGTCAA
Desulfovibrio salexigens DSM 2638 Desal_3438 -204 4 TTTCCAATTATGTTTT
-153 4 TTTTCAGTTTTGGCAC
-91 3.7 TGTCTAAAATTGTAAA
-50 4 GAGACGAAATTGTAAA
Desulfovibrio vulgaris Hildenborough DVU1231 -159 3.9 ACGACAAAAATGCAAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_0866 -208 4.1 TTTACAAAAAAGAAAC
-176 4.3 GTTACCAAAATGGAAA
-175 3.9 TTACCAAAATGGAAAA
Position: -182
Score: 4.5
Sequence: TTTTCGTTTTTGTCAA
Position: -173
Score: 3.9
Sequence: TTGTCAATATTGGATC
Position: -141
Score: 5
Sequence: TTGACAAAAATGAAAA
Locus tag: Dret_2389
Dret_2389 -182 4.5 TTTTCGTTTTTGTCAA
-173 3.9 TTGTCAATATTGGATC
-141 5 TTGACAAAAATGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Desulfohalobium retbaense DSM 5692 Dret_2389 -182 4.5 TTTTCGTTTTTGTCAA
-173 3.9 TTGTCAATATTGGATC
-141 5 TTGACAAAAATGAAAA
Desulfomicrobium baculatum DSM 4028 Dbac_2819 -89 4.6 TTTCCAATTTTGCAAA
Desulfovibrio desulfuricans G20 Dde_0104 -140 4 TTTGCAAAAATGTGAT
Desulfovibrio vulgaris Hildenborough DVU3392 -176 3.9 TGAACAACATTGTCAA
-135 4.8 CTTCCAATAATGTAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_2099 -203 4.9 TTTACAATGATGTCAA
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