Propagation of NifA-1 regulog to Desulfohalobium retbaense DSM 5692
| Source regulog: | NifA-1 - Desulfovibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | |
| Biological process: | Nitrogen assimilation |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Propagated regulon: | |
| Target genome | Desulfohalobium retbaense DSM 5692 |
| Orthologous TF(s) | Dret_0831 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -151
Score: 5 Sequence: TTTTCAATTTTGTCAA
Locus tag: Dret_0113
|
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| Dret_0113 | -151 | 5 | TTTTCAATTTTGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amtB2 | ||||
| Ortholog function: Ammonium transporter | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0113 | -393 | 3.9 | GTTTCAGAAATGGAAG |
| -270 | 4.5 | ATTCCATTTTTGTAAC | ||
| -151 | 5 | TTTTCAATTTTGTCAA | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3049 | -284 | 4.5 | CTTCCAAAATTGAAAA |
| -176 | 4.7 | TATACATAAATGTTAA | ||
| -64 | 3.7 | TTAACAACTTTGGCAC | ||
| Desulfovibrio desulfuricans G20 | Dde_3492 | -192 | 4.9 | TTTACTTTTTTGTAAA |
| -160 | 5.2 | TTGACATATATGTCAA | ||
| Desulfovibrio salexigens DSM 2638 | Desal_3066 | -289 | 4.4 | CTGAAAAAATTGTCAA |
| -185 | 4.7 | TTTACCTTTTTGTAAT | ||
| -134 | 4.4 | AATACATTTTTGTAAT | ||
|
Position: -103
Score: 3.8 Sequence: TTGACGAAAACGTATA
Position: -87
Score: 4.6 Sequence: TTTACATTTTCGTAAC
Locus tag: Dret_0402
|
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| Dret_0402 | -103 | 3.8 | TTGACGAAAACGTATA | |
| -87 | 4.6 | TTTACATTTTCGTAAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DVU0671 | ||||
| Ortholog function: Ferredoxin-dependent glutamate synthase | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0402 | -87 | 4.6 | TTTACATTTTCGTAAC |
| Desulfovibrio desulfuricans G20 | Dde_1218 | -353 | 4.7 | TTGACGTTTATGTCAA |
| -198 | 3.7 | ATTGCATTTTTCTCAA | ||
| Desulfovibrio salexigens DSM 2638 | Desal_3587 | -194 | 3.8 | TTACAAATATTGTTAA |
| -92 | 4.8 | TTTACAATATTGATAA | ||
| -35 | 4.3 | CTAACAGTATTGAAAA | ||
| Desulfovibrio vulgaris Hildenborough | DVU0671 | -355 | 4.8 | GTTACATTTTTGTAAT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2665 | -369 | 3.7 | TTCGCGAAATTGTAAA |
|
Position: -173
Score: 3.9 Sequence: GTAACAAATTTGTCCA
Position: -132
Score: 4.2 Sequence: ATGCCATTTTTGACAA
Locus tag: Dret_2267
|
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| Dret_2267 | -173 | 3.9 | GTAACAAATTTGTCCA | |
| -132 | 4.2 | ATGCCATTTTTGACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amtB | ||||
| Ortholog function: Ammonium transporter | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2267 | -173 | 3.9 | GTAACAAATTTGTCCA |
| -132 | 4.2 | ATGCCATTTTTGACAA | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3048 | -387 | 4.5 | TTTTCAATTTTGGAAG |
| Desulfovibrio desulfuricans G20 | Dde_2311 | -207 | 3.7 | TTAACAAAATTGTGTT |
| -175 | 4.3 | ATAACAAATATGTATA | ||
| Desulfovibrio magneticus RS-1 | DMR_34890 | -158 | 4.4 | GTTGCAAAAATGTCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_3438 | -204 | 4 | TTTCCAATTATGTTTT |
| -153 | 4 | TTTTCAGTTTTGGCAC | ||
| -91 | 3.7 | TGTCTAAAATTGTAAA | ||
| -50 | 4 | GAGACGAAATTGTAAA | ||
| Desulfovibrio vulgaris Hildenborough | DVU1231 | -159 | 3.9 | ACGACAAAAATGCAAA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0866 | -208 | 4.1 | TTTACAAAAAAGAAAC |
| -176 | 4.3 | GTTACCAAAATGGAAA | ||
| -175 | 3.9 | TTACCAAAATGGAAAA | ||
|
Position: -182
Score: 4.5 Sequence: TTTTCGTTTTTGTCAA
Position: -173
Score: 3.9 Sequence: TTGTCAATATTGGATC
Position: -141
Score: 5 Sequence: TTGACAAAAATGAAAA
Locus tag: Dret_2389
|
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| Dret_2389 | -182 | 4.5 | TTTTCGTTTTTGTCAA | |
| -173 | 3.9 | TTGTCAATATTGGATC | ||
| -141 | 5 | TTGACAAAAATGAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: Glutamine synthetase type I (EC 6.3.1.2) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2389 | -182 | 4.5 | TTTTCGTTTTTGTCAA |
| -173 | 3.9 | TTGTCAATATTGGATC | ||
| -141 | 5 | TTGACAAAAATGAAAA | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_2819 | -89 | 4.6 | TTTCCAATTTTGCAAA |
| Desulfovibrio desulfuricans G20 | Dde_0104 | -140 | 4 | TTTGCAAAAATGTGAT |
| Desulfovibrio vulgaris Hildenborough | DVU3392 | -176 | 3.9 | TGAACAACATTGTCAA |
| -135 | 4.8 | CTTCCAATAATGTAAG | ||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2099 | -203 | 4.9 | TTTACAATGATGTCAA |