Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NifA-1 regulog to Desulfovibrio vulgaris Hildenborough

Reference regulog properties
Source regulog: NifA-1 - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process: Nitrogen assimilation
Effector:
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio vulgaris Hildenborough
Orthologous TF(s) DVU1949
Regulated genes 4
Built upon 101 sites [see more]
Predicted regulatory interactions in Desulfovibrio vulgaris Hildenborough
Locus tag Position Score Sequence
Position: -275
Score: 4.7
Sequence: TATACATTTTTGGAAA
Position: -230
Score: 4.6
Sequence: ATTACAATAGTGTCAA
Position: -178
Score: 4.3
Sequence: TTTACTATTTTGAAAG
Locus tag: DVU1258
DVU1258 -275 4.7 TATACATTTTTGGAAA
-230 4.6 ATTACAATAGTGTCAA
-178 4.3 TTTACTATTTTGAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnN
Ortholog function: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Desulfomicrobium baculatum DSM 4028 Dbac_1496 -328 4 TTGACATTTATGTGCA
-208 4.6 TTTGCAAATTTGTAAT
-155 4.5 ATTTCAAAAATGTAAT
Desulfovibrio desulfuricans G20 Dde_0102 -216 4.1 TTAACAAAAAAGTTAA
-174 4.7 TAAACATTTATGTAAA
Desulfovibrio magneticus RS-1 DMR_10730 -335 3.7 TTGACACAATTGTTTC
-236 4.4 TTTACATTATTGCTAG
Desulfovibrio salexigens DSM 2638 Desal_2290 -276 4.7 TATACAATTTTGTAAC
-225 4.8 ATTACATTTTTGTAAC
-182 4.6 TCTACATTTTTGTAAG
Desulfovibrio vulgaris Hildenborough DVU1258 -411 4.3 TTTACATATTTGATAC
-275 4.7 TATACATTTTTGGAAA
-230 4.6 ATTACAATAGTGTCAA
-178 4.3 TTTACTATTTTGAAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_1590 -332 3.9 GTTACAAGTTTGCAAA
-288 3.9 TGAACGAATTTGTAAA
-54 4 GAAACAAATTTGTAAG
Position: -92
Score: 4.9
Sequence: TTGACATTTCTGTAAG
Locus tag: DVU1952
DVU1952 -92 4.9 TTGACATTTCTGTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1952
Ortholog function: hypothetical protein
Desulfovibrio vulgaris Hildenborough DVU1952 -92 4.9 TTGACATTTCTGTAAG
Position: -248
Score: 4.1
Sequence: ATTACTTTTTTGTCAC
Locus tag: DVU2343
DVU2343 -248 4.1 ATTACTTTTTTGTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: ABC-type polar amino acid transport system, ATPase component
Desulfovibrio desulfuricans G20 Dde_1428 -253 5.1 TTTACAATTATGTAAC
-59 3.7 TTGACAATTTTGAGCA
23 3.5 TATTCATAAATGGTAC
Desulfovibrio salexigens DSM 2638 Desal_1519 -358 3.9 TTGTCTTTTTTGTATA
-197 4.5 TGTACATAAATGGAAA
Desulfovibrio vulgaris Hildenborough DVU2343 -403 3.7 TTGTCTTGTTTGTAAA
-248 4.1 ATTACTTTTTTGTCAC
Desulfovibrio vulgaris str. Miyazaki F DvMF_3151 -340 4.6 TTTACGTTTTTGTTAA
-67 4.7 CTGACAATATGGTAAA
Position: -176
Score: 3.9
Sequence: TGAACAACATTGTCAA
Position: -135
Score: 4.8
Sequence: CTTCCAATAATGTAAG
Locus tag: DVU3392
DVU3392 -176 3.9 TGAACAACATTGTCAA
-135 4.8 CTTCCAATAATGTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Desulfohalobium retbaense DSM 5692 Dret_2389 -182 4.5 TTTTCGTTTTTGTCAA
-173 3.9 TTGTCAATATTGGATC
-141 5 TTGACAAAAATGAAAA
Desulfomicrobium baculatum DSM 4028 Dbac_2819 -89 4.6 TTTCCAATTTTGCAAA
Desulfovibrio desulfuricans G20 Dde_0104 -140 4 TTTGCAAAAATGTGAT
Desulfovibrio vulgaris Hildenborough DVU3392 -176 3.9 TGAACAACATTGTCAA
-135 4.8 CTTCCAATAATGTAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_2099 -203 4.9 TTTACAATGATGTCAA
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