Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Rex regulog to Staphylococcus carnosus subsp. carnosus TM300

Reference regulog properties
Source regulog: Rex - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus carnosus subsp. carnosus TM300
Orthologous TF(s) Sca_1553
Regulated genes 10
Built upon 74 sites [see more]
Predicted regulatory interactions in Staphylococcus carnosus subsp. carnosus TM300
Locus tag Position Score Sequence
Position: -55
Score: 5.5
Sequence: ATGTGAAATAAATCATAT
Locus tag: Sca_1369
Sca_1369 -55 5.5 ATGTGAAATAAATCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: L-lactate dehydrogenase (EC:1.1.1.27)
Staphylococcus aureus subsp. aureus N315 SA0232 -227 6 ATGTGAAATAAATCACAA
-169 6 ATGTGAAATAAATCACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1369 -55 5.5 ATGTGAAATAAATCATAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1001 -113 6.1 TTGTGAAATAAATCACAA
-55 6.1 TTGTGAAATAAATCACAA
Macrococcus caseolyticus JCSC5402 MCCL_0163 -142 6.1 TTGTGAAAATAATCACAA
Position: -75
Score: 5.9
Sequence: TTGTGAAAGTATTCACAA
Locus tag: Sca_1814
Sca_1814 -75 5.9 TTGTGAAAGTATTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirC
Ortholog function: Formate/nitrite family of transporters
Staphylococcus aureus subsp. aureus N315 SA0293 -72 6.2 TTGTGAAATTATTCACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1814 -75 5.9 TTGTGAAAGTATTCACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0590 -71 6.2 TTGTGAAAATATTCACAA
Position: -85
Score: 5.9
Sequence: ATGTGAATTAATTCACAT
Locus tag: Sca_1867
Sca_1867 -85 5.9 ATGTGAATTAATTCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lctP
Ortholog function: L-lactate permease
Staphylococcus carnosus subsp. carnosus TM300 Sca_1867 -85 5.9 ATGTGAATTAATTCACAT
Position: -64
Score: 5.7
Sequence: TTGTGAATACATTCACAT
Locus tag: Sca_1899
Sca_1899 -64 5.7 TTGTGAATACATTCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirR
Ortholog function: Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
Staphylococcus aureus subsp. aureus N315 SA2189 -64 5.3 ATGTGATTCTTTTCACAA
Staphylococcus capitis SK14 STACA0001_1076 -64 6 ATGTGAATAAAATCACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1899 -64 5.7 TTGTGAATACATTCACAT
Macrococcus caseolyticus JCSC5402 MCCL_1342 -91 5.8 ATGTGAACATATTCACAA
Position: -93
Score: 5.3
Sequence: AAGTGATTTTTTTCACAA
Locus tag: Sca_2017
Sca_2017 -93 5.3 AAGTGATTTTTTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pflB
Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54)
Staphylococcus aureus subsp. aureus N315 SA0218 -96 6 ATGTGAAAAAAATCACAA
Staphylococcus epidermidis ATCC 12228 SE0214 -74 5.8 ATGTGAAATTAATCACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2017 -93 5.3 AAGTGATTTTTTTCACAA
Macrococcus caseolyticus JCSC5402 MCCL_0434 -74 4.7 TTGTGATACTTTTCACGT
Position: -74
Score: 5.5
Sequence: ATGTGATTTTAATCACAT
Locus tag: Sca_2085
Sca_2085 -74 5.5 ATGTGATTTTAATCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Arginine deiminase (EC 3.5.3.6)
Staphylococcus carnosus subsp. carnosus TM300 Sca_2085 -74 5.5 ATGTGATTTTAATCACAT
Position: -81
Score: 6
Sequence: TTGTGAATATATTCACAT
Locus tag: Sca_2121
Sca_2121 -81 6 TTGTGAATATATTCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ddh
Ortholog function: D-lactate dehydrogenase (EC 1.1.1.28)
Staphylococcus aureus subsp. aureus N315 SA2312 -39 5.9 TTGTGATATTTTTCACAA
Staphylococcus capitis SK14 STACA0001_0984 -119 5.8 TTGTGAAAACTTTCACAA
Staphylococcus epidermidis ATCC 12228 SE2074 -100 5.5 TAGTGAATTAAATCACAT
-56 4.9 TTGTGAATGTTTTTACTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2121 -81 6 TTGTGAATATATTCACAT
Staphylococcus haemolyticus JCSC1435 SH0545 -203 5.5 ATGTGAATTTTTTAACAA
-154 6.2 TTGTGAATAAATTCACAA
Position: -36
Score: 5.7
Sequence: ATGTGAAATCAATCACAA
Locus tag: Sca_2251
Sca_2251 -36 5.7 ATGTGAAATCAATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcB
Ortholog function: Ornithine carbamoyltransferase (EC 2.1.3.3)
Staphylococcus epidermidis ATCC 12228 SE0103 -76 5.5 TTGTGAATTAAATCACAC
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