Propagation of LexA regulog to Staphylococcus carnosus subsp. carnosus TM300
| Source regulog: | LexA - Staphylococcaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Staphylococcus carnosus subsp. carnosus TM300 |
| Orthologous TF(s) | Sca_0980 |
| Regulated genes | 8 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -126
Score: 5.5 Sequence: AACAGAACATATGTTCGATT
Locus tag: Sca_0377
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| Sca_0377 | -126 | 5.5 | AACAGAACATATGTTCGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SA0684 | ||||
| Ortholog function: putative permease | ||||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0377 | -126 | 5.5 | AACAGAACATATGTTCGATT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1988 | -125 | 5.1 | TACAGAACATTTGTTCGTGT |
|
Position: -267
Score: 4.8 Sequence: CTGCGAACAGATGTTTGTAC
Locus tag: Sca_0407
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| Sca_0407 | -267 | 4.8 | CTGCGAACAGATGTTTGTAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrB | ||||
| Ortholog function: excinuclease ABC subunit B | ||||
| Staphylococcus aureus subsp. aureus N315 | SA0713 | -107 | 5.4 | TTACGAACAAACGTTTGCTT |
| Staphylococcus capitis SK14 | STACA0001_0273 | -126 | 5.4 | AAGCGAACAAACGTTTGCTT |
| Staphylococcus epidermidis ATCC 12228 | SE0541 | -130 | 5.7 | AAGCGAACAAATGTTTGTAT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0407 | -267 | 4.8 | CTGCGAACAGATGTTTGTAC |
| Staphylococcus haemolyticus JCSC1435 | SH2131 | -266 | 5.5 | AAGCGAACAAACGTTTGTAT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1959 | -176 | 5.6 | CTACGAACAAATGTTTGTTT |
| Macrococcus caseolyticus JCSC5402 | MCCL_0509 | -67 | 5.3 | TTACGAACAAATGTTTGTAC |
|
Position: -102
Score: 5 Sequence: AATCGAACAAACATTCGCAA
Locus tag: Sca_0926
|
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| Sca_0926 | -102 | 5 | AATCGAACAAACATTCGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recA | ||||
| Ortholog function: recombinase A | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1128 | -145 | 5.1 | ATAAGCACGTTTGTTCGTTT |
| -102 | 5.4 | ATACGAACAAATATTCGCAA | ||
| Staphylococcus capitis SK14 | STACA0001_2334 | -146 | 4.9 | ATAAGTACGTTTGTTCGATT |
| -103 | 5.1 | ACACGAACAAATATTCGCAA | ||
| Staphylococcus epidermidis ATCC 12228 | SE0963 | -145 | 5.1 | ATAAGTACGTTTGTTCGTTT |
| -102 | 5.4 | ATACGAACAAATATTCGCAA | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0926 | -102 | 5 | AATCGAACAAACATTCGCAA |
| Staphylococcus haemolyticus JCSC1435 | SH1628 | -105 | 5.2 | AAGCGAACAAATATTCGCAA |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1480 | -104 | 5.1 | TAGCGAACAAATATTCGCAA |
| Macrococcus caseolyticus JCSC5402 | MCCL_0875 | -132 | 5.2 | ATACAAACAGACGTTCGCAT |
|
Position: -74
Score: 5.5 Sequence: TTACGAACAAATGTTTGTAA
Locus tag: Sca_0980
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| Sca_0980 | -74 | 5.5 | TTACGAACAAATGTTTGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lexA | ||||
| Ortholog function: SOS regulatory LexA protein | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1174 | -132 | 4.9 | CCTAGAACATTTGTTTGTAT |
| -74 | 5.6 | TAACGAACAAATGTTTGTTT | ||
| Staphylococcus capitis SK14 | STACA0001_1582 | -132 | 4.7 | CCTAGAACGTTTGTTTGTAT |
| -103 | 4.8 | ATCAGAACGAATGTTCTGTG | ||
| -74 | 5.7 | AAACGAACAAACGTTTGTTT | ||
| Staphylococcus epidermidis ATCC 12228 | SE1022 | -517 | 4.9 | cctaGAACATtTGTTtGTAT |
| -459 | 5.5 | tTACGAACAaATGTTtGTta | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0980 | -132 | 4.7 | CCCAGAACATTTGTTTGCAT |
| -103 | 4.9 | ATCAGAACGATTGTTCGCTG | ||
| -74 | 5.5 | TTACGAACAAATGTTTGTAA | ||
| Staphylococcus haemolyticus JCSC1435 | SH1568 | -132 | 5 | TCTAGAACATTTGTTTGTAT |
| -103 | 4.8 | AACAGAACATCTGTTCTTAG | ||
| -74 | 5.4 | AAACGAACAAATGTTTGTTC | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1418 | -131 | 4.7 | CCTAGAACGTTTGTTTGTAT |
| -102 | 4.9 | ATCAGAACATTTGTTCTATG | ||
| -73 | 5.5 | AAACGAACAAACGTTTGTAA | ||
| Macrococcus caseolyticus JCSC5402 | MCCL_0995 | -135 | 4.9 | CCTAGAACATTTGTTTGTAT |
| -77 | 5.7 | ATACGAACAAATGTTTGTTA | ||
|
Position: -35
Score: 5.4 Sequence: TAACGAACGTATGTTTGTAG
Locus tag: Sca_0995
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| Sca_0995 | -35 | 5.4 | TAACGAACGTATGTTTGTAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: parE | ||||
| Ortholog function: DNA topoisomerase IV subunit B | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1188 | -32 | 5.3 | AAACGAACGTACGTTTGCAG |
| Staphylococcus capitis SK14 | STACA0001_1601 | -33 | 5.4 | AAACGAACGTACGTTTGTAG |
| Staphylococcus epidermidis ATCC 12228 | SE1036 | -33 | 5.2 | TAACGAACGTACGTTTGTAG |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_0995 | -35 | 5.4 | TAACGAACGTATGTTTGTAG |
| Staphylococcus haemolyticus JCSC1435 | SH1554 | -32 | 5.4 | AAACGAACGTACGTTTGTAG |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1404 | -33 | 5.4 | AAACGAACGTACGTTTGTAG |
| Macrococcus caseolyticus JCSC5402 | MCCL_1011 | -31 | 5.2 | TTTCGAACGTATGTTTGTAG |
|
Position: -82
Score: 5.2 Sequence: AACAGAACATTTGTTCTTTA
Position: -53
Score: 5.7 Sequence: ATAAGAACAAATGTTCGCAT
Locus tag: Sca_1008
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| Sca_1008 | -82 | 5.2 | AACAGAACATTTGTTCTTTA | |
| -53 | 5.7 | ATAAGAACAAATGTTCGCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrX | ||||
| Ortholog function: Putative UV-damage repair protein | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1196 | -79 | 5 | AACAGAACATTTGTTCTAAA |
| -51 | 4.8 | AATAGAACACGTGTTCGTAT | ||
| Staphylococcus capitis SK14 | STACA0001_1610 | -78 | 5 | AATAGAACATTCGTTCTTGT |
| -49 | 4.9 | ATAAGAACACGTGTTCTTAT | ||
| Staphylococcus epidermidis ATCC 12228 | SE1046 | -77 | 5.7 | ATAAGAACAAATGTTCTTAT |
| -48 | 4.7 | AATAGAACACGTGTTCTTAT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1008 | -82 | 5.2 | AACAGAACATTTGTTCTTTA |
| -53 | 5.7 | ATAAGAACAAATGTTCGCAT | ||
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1009 | -82 | 5.2 | AACAGAACATTTGTTCTTTA |
| -53 | 5.7 | ATAAGAACAAATGTTCGCAT | ||
| Staphylococcus haemolyticus JCSC1435 | SH1545 | -81 | 4.9 | TAAAGAACATTAGTTCTTAT |
| -52 | 5.8 | AAAAGAACAAATGTTCGTAT | ||
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP1388 | -80 | 5.1 | ATTGGAACATTTGTTCTTAT |
| -51 | 5.6 | AATAGAACATTTGTTCGTAT | ||
| Macrococcus caseolyticus JCSC5402 | MCCL_1033 | -38 | 5.4 | ATAAGAACATACGTTCTATT |
| -10 | 4.9 | AATAGAACGTATGTTCTGGT | ||
|
Position: -59
Score: 5.3 Sequence: TAGCGAACAAGTGTTCGTAT
Locus tag: Sca_1497
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| Sca_1497 | -59 | 5.3 | TAGCGAACAAGTGTTCGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SA1738 | ||||
| Ortholog function: SPBc2 prophage-derived uncharacterized protein | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1738 | -51 | 5.3 | AACAGAACACATGTTCGTAT |
| Staphylococcus capitis SK14 | STACA0001_1975 | -52 | 5.6 | AATAGAACAAATGTTCGTAT |
| Staphylococcus epidermidis ATCC 12228 | SE1605 | -52 | 5.6 | AACAGAACAAATGTTCGTAT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1497 | -59 | 5.3 | TAGCGAACAAGTGTTCGTAT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0868 | -51 | 5.6 | AATAGAACGTATGTTCGTAT |
| Macrococcus caseolyticus JCSC5402 | MCCL_1665 | -34 | 5.4 | AACAGAACGTACGTTCGTAT |
|
Position: -68
Score: 5.1 Sequence: GACCGAAAATATGTTCGTTT
Locus tag: Sca_1672
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| Sca_1672 | -68 | 5.1 | GACCGAAAATATGTTCGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SA1975 | ||||
| Ortholog function: predicted membrane-bound hydrolase | ||||
| Staphylococcus aureus subsp. aureus N315 | SA1975 | -66 | 4.9 | ACCCGAAAATATGTTCGTGT |
| Staphylococcus capitis SK14 | STACA0001_1306 | -65 | 5.2 | ACACGAAAGTATGTTCGCTT |
| Staphylococcus epidermidis ATCC 12228 | SE1762 | -66 | 5.1 | GTACGAAAGTATGTTCGCAT |
| Staphylococcus carnosus subsp. carnosus TM300 | Sca_1672 | -68 | 5.1 | GACCGAAAATATGTTCGTTT |
| Staphylococcus haemolyticus JCSC1435 | SH0869 | -66 | 5.2 | CACCGAAAATATGTTCGTAT |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | SSP0715 | -66 | 5.3 | TTACGAAAGTATGTTCGCAT |