Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Staphylococcus carnosus subsp. carnosus TM300

Reference regulog properties
Source regulog: Fur - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus carnosus subsp. carnosus TM300
Orthologous TF(s) Sca_1124
Regulated genes 14
Built upon 106 sites [see more]
Predicted regulatory interactions in Staphylococcus carnosus subsp. carnosus TM300
Locus tag Position Score Sequence
Position: -144
Score: 6.2
Sequence: ATTGAGAATAATTATCATT
Locus tag: Sca_0030
Sca_0030 -144 6.2 ATTGAGAATAATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: isdG
Ortholog function: heme-degrading monooxygenase IsdG (Iron-regulatedsurface determinant isdG) (Iron-responsive surface determinant isdG)(Heme oxygenase)
Staphylococcus aureus subsp. aureus N315 SA0983 -148 6.6 ATTGATAATGGTTATCAAT
-69 6.3 AATGATAATCATTATTATT
Staphylococcus capitis SK14 STACA0001_2147 -86 5.4 GTTGATAACTATTTTCATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0030 -144 6.2 ATTGAGAATAATTATCATT
Position: -222
Score: 6.4
Sequence: TATGATAATGATTATCAAT
Locus tag: Sca_0295
Sca_0295 -222 6.4 TATGATAATGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuA
Ortholog function: ferrichrome transport ATP-binding protein FhuA
Staphylococcus aureus subsp. aureus N315 SA0602 -102 6.2 CATGATAATCATTATCAAT
Staphylococcus capitis SK14 STACA0001_0381 -109 6.4 TATGATAATGATTATCAAT
Staphylococcus epidermidis ATCC 12228 SE0421 -119 6.2 TGTGATAATGATTATCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0295 -222 6.4 TATGATAATGATTATCAAT
Staphylococcus haemolyticus JCSC1435 SH2247 -69 6.3 TATGATAATTATTATCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2073 -111 6.3 TATGATAATGATTATCATT
Macrococcus caseolyticus JCSC5402 MCCL_0166 -46 6.8 ATTGATAATCATTATCAAT
Position: -78
Score: 6.2
Sequence: AGTGATAATGATTATCAGT
Locus tag: Sca_0381
Sca_0381 -78 6.2 AGTGATAATGATTATCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sstA
Ortholog function: putative siderophore ABC transporter permease
Staphylococcus aureus subsp. aureus N315 SA0688 -43 6.7 AATGATAATGATTATCATT
Staphylococcus epidermidis ATCC 12228 SE0515 -78 6.7 AATGATAATCATTATCATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0381 -78 6.2 AGTGATAATGATTATCAGT
Staphylococcus haemolyticus JCSC1435 SH2160 -68 6.2 AATGATAATCATTATCGTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1984 -75 6.4 ATTGATAATGATTATCATA
Macrococcus caseolyticus JCSC5402 MCCL_1838 -33 6.4 ATTGATAACTATTATCAAT
Position: -39
Score: 6.7
Sequence: AATGATAATGATTATCATT
Locus tag: Sca_0449
Sca_0449 -39 6.7 AATGATAATGATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0757
Ortholog function: putative NAD(P)H nitroreductase
Staphylococcus aureus subsp. aureus N315 SA0757 -41 5.6 ATTGAGAAGTATTATCATT
Staphylococcus capitis SK14 STACA0001_0225 -42 5.8 ATTGATAATTGTTATCAAC
Staphylococcus epidermidis ATCC 12228 SE0593 -44 6 ATTGATAATGGTTATCATG
Staphylococcus carnosus subsp. carnosus TM300 Sca_0449 -39 6.7 AATGATAATGATTATCATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1872 -38 6 ATTGAAAATAGTTATCATT
Macrococcus caseolyticus JCSC5402 MCCL_0533 -41 6.4 ATTGATAATAGTTATCAAT
Position: -190
Score: 5.6
Sequence: ATTGAAAACAATTCTCAAT
Locus tag: Sca_0991
Sca_0991 -190 5.6 ATTGAAAACAATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citB
Ortholog function: aconitate hydratase
Staphylococcus aureus subsp. aureus N315 SA1184 -198 6.3 ATTGATAATTATTCTCAAT
Staphylococcus capitis SK14 STACA0001_1597 -198 6.1 ATTGATAACCATTCTCAAT
Staphylococcus epidermidis ATCC 12228 SE1032 -198 6.1 ATTGATAACCATTCTCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0991 -190 5.6 ATTGAAAACAATTCTCAAT
Staphylococcus haemolyticus JCSC1435 SH1558 -202 6 AATGAAAATCATTCTCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1408 -193 4.8 GCTGATAATGATTCTCAAC
Position: -185
Score: 5.9
Sequence: ATTGATAATCATTTTCAAG
Position: -152
Score: 6.2
Sequence: ATTGATAATGATTGTCAAT
Locus tag: Sca_1060
Sca_1060 -185 5.9 ATTGATAATCATTTTCAAG
-152 6.2 ATTGATAATGATTGTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arlR
Ortholog function: response regulator ArlR
Staphylococcus aureus subsp. aureus N315 SA1248 -619 5.9 ATTGATAATCATTtTCAAc
-586 5.5 AgTGAgAATCATTgTCAAT
Staphylococcus capitis SK14 STACA0001_1664 -289 5.3 ATTGATAATCATTTACAAC
-256 5.8 ATTGAGAATCATTGTCAAT
Staphylococcus epidermidis ATCC 12228 SE1100 28 6.5 ATTGATAATCATTtTCAAT
61 6.2 ATTGATAATGATTgTCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1060 -185 5.9 ATTGATAATCATTTTCAAG
-152 6.2 ATTGATAATGATTGTCAAT
Staphylococcus haemolyticus JCSC1435 SH1490 -245 6.1 ATTGATAATCATTTTCAAA
-212 6.2 ATTGATAATCATTGTCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1323 -207 6.5 ATTGATAATCATTTTCAAT
Macrococcus caseolyticus JCSC5402 MCCL_1066 -185 5.9 AATGAAAATGATTCTCATT
Position: -192
Score: 6.1
Sequence: AATGAGAATCGTTATCAAT
Locus tag: Sca_1680
Sca_1680 -192 6.1 AATGAGAATCGTTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfmC
Ortholog function: iron(III) dicitrate ABC transporter binding protein
Staphylococcus aureus subsp. aureus N315 SA1979 -59 6.3 AATGATAATTGTTATCAAT
Staphylococcus capitis SK14 STACA0001_1300 -60 6.1 AATGAGAATCGTTATCAAT
Staphylococcus epidermidis ATCC 12228 SE1768 -52 6.1 ATTGAGAATCGTTATCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1680 -192 6.1 AATGAGAATCGTTATCAAT
Staphylococcus haemolyticus JCSC1435 SH0863 -62 6.6 ATTGATAATCGTTATCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0709 -61 6 ACCGATAATCATTATCAAT
Position: -42
Score: 6.8
Sequence: AATGATAATCATTATCAAT
Locus tag: Sca_1683
Sca_1683 -42 6.8 AATGATAATCATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1982
Ortholog function: putative permease of the major facilitator superfamily
Staphylococcus aureus subsp. aureus N315 SA1982 -45 5.9 AATGATAATGATTCTTATT
Staphylococcus capitis SK14 STACA0001_1297 -41 6.6 AATGATAATTATTATCAAT
Staphylococcus epidermidis ATCC 12228 SE1771 -40 6.6 AATGATAATTATTATCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1683 -42 6.8 AATGATAATCATTATCAAT
Staphylococcus haemolyticus JCSC1435 SH0860 -54 6.4 AATGATATTCATTATCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0706 -38 6.6 AATGATAATTATTATCAAT
Position: -83
Score: 6.8
Sequence: ATTGATAATGATTATCATT
Locus tag: Sca_1684
Sca_1684 -83 6.8 ATTGATAATGATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iucB
Ortholog function: putative aerobactin biosynthesis protein, IucA/IucC family
Staphylococcus aureus subsp. aureus N315 SA1983 -75 5.9 AATAAGAATCATTATCATT
Staphylococcus capitis SK14 STACA0001_1296 -82 6.6 ATTGATAATAATTATCATT
Staphylococcus epidermidis ATCC 12228 SE1772 -81 6.6 ATTGATAATAATTATCATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1684 -83 6.8 ATTGATAATGATTATCATT
Staphylococcus haemolyticus JCSC1435 SH0859 -79 6.4 ATTGATAATGAATATCATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0705 -83 6.6 ATTGATAATAATTATCATT
Position: -36
Score: 6.1
Sequence: AATGATAATCGTTTTCAAT
Locus tag: Sca_1778
Sca_1778 -36 6.1 AATGATAATCGTTTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuD2
Ortholog function: ferric hydroxamate binding protein of ABC transporter
Staphylococcus aureus subsp. aureus N315 SA2079 -30 6.5 ATTGATAATCATTTTCAAT
Staphylococcus capitis SK14 STACA0001_1209 -31 6.3 ATTGATAATCGTTATCACT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1778 -36 6.1 AATGATAATCGTTTTCAAT
Staphylococcus haemolyticus JCSC1435 SH0768 -30 5.6 ATTGATAATCGTTTTCAAC
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0623 -30 6.1 ACTGATAATCATTTTCAAT
Position: -58
Score: 5.3
Sequence: GTTGAGAATAATTTTCAAT
Locus tag: Sca_1872
Sca_1872 -58 5.3 GTTGAGAATAATTTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: trxB
Ortholog function: ferredoxin--NADP reductase
Staphylococcus aureus subsp. aureus N315 SA2162 -110 6.6 AATGATAATAATTATCAAT
Staphylococcus capitis SK14 STACA0001_1105 -62 6.3 AATGATAATAATTATCACT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1872 -58 5.3 GTTGAGAATAATTTTCAAT
Staphylococcus haemolyticus JCSC1435 SH0681 -51 6.5 AATGATAATAATTATCATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0530 -68 6.6 ATTGATAATCGTTATCAAT
Macrococcus caseolyticus JCSC5402 MCCL_0165 -79 6.8 ATTGATAATGATTATCAAT
Position: -51
Score: 6.2
Sequence: ATTGATAATAATAATCAAT
Locus tag: Sca_2028
Sca_2028 -51 6.2 ATTGATAATAATAATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: putative ferrous iron transport protein A
Staphylococcus aureus subsp. aureus N315 SA2338 -41 6.1 AGTGATAATGATTATTATT
Staphylococcus capitis SK14 STACA0001_0945 -42 6.4 ATTGATAATGATTATTAAT
Staphylococcus epidermidis ATCC 12228 SE2115 -36 6.4 AATGATAATGATTATTAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2028 -51 6.2 ATTGATAATAATAATCAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2435 -36 6.4 ATTGATAATGATTATTATT
Position: -63
Score: 6.2
Sequence: ATTGATAATCTTTATCATT
Locus tag: Sca_2211a
Sca_2211a -63 6.2 ATTGATAATCTTTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tatA
Ortholog function: putative sec-independant protein translocase
Staphylococcus aureus subsp. aureus N315 SA0335 -67 6.3 ATTGATAATCATTATCGTT
Staphylococcus capitis SK14 STACA0001_1113 -71 6.3 ATTGATAATCTTTATCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2211a -63 6.2 ATTGATAATCTTTATCATT
Staphylococcus haemolyticus JCSC1435 SH0688 -70 6.1 ATTGATAATATTTATCAAT
Position: -69
Score: 6.6
Sequence: ATTGATAACGATTATCAAT
Locus tag: Sca_2215
Sca_2215 -69 6.6 ATTGATAACGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: efeO
Ortholog function: Ferrous iron transport periplasmic protein EfeO
Staphylococcus aureus subsp. aureus N315 SA0331 -157 5.7 TTTGATAATTATTATCAAC
Staphylococcus capitis SK14 STACA0001_1108 -93 6.8 ATTGATAATGATTATCAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2215 -69 6.6 ATTGATAACGATTATCAAT
Staphylococcus haemolyticus JCSC1435 SH0684 -158 6.5 TTTGATAATGATTATCAAT
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