Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CymR regulog to Staphylococcus carnosus subsp. carnosus TM300

Reference regulog properties
Source regulog: CymR - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus carnosus subsp. carnosus TM300
Orthologous TF(s) Sca_1238
Regulated genes 9
Built upon 69 sites [see more]
Predicted regulatory interactions in Staphylococcus carnosus subsp. carnosus TM300
Locus tag Position Score Sequence
Position: -269
Score: 5
Sequence: TAAATACGATATATTTACTAAGGATTT
Locus tag: Sca_0042
Sca_0042 -269 5 TAAATACGATATATTTACTAAGGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tcyP
Ortholog function: L-cystine uptake protein tcyP
Staphylococcus aureus subsp. aureus N315 SA0368 -54 5.8 TTATTCTTAGCATACTAGTCGGAATTA
Staphylococcus capitis SK14 STACA0001_1450 -57 5.1 ATATCCTTATTATATATGTCGGAATAC
Staphylococcus epidermidis ATCC 12228 SE2354 -56 5.3 TTATTCTTATTACATATGTCGGAATAC
Staphylococcus carnosus subsp. carnosus TM300 Sca_0042 -269 5 TAAATACGATATATTTACTAAGGATTT
-151 4.3 TTTTACCTACATAACTACTATTTAAAA
Staphylococcus haemolyticus JCSC1435 SH2589 -49 5.4 TTATCCTTATTAAGTATGTCGGAATTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2329 -63 4.6 ATATCCTTAGTATACGTATCGGATTTC
Macrococcus caseolyticus JCSC5402 MCCL_0267 32 5.5 TAATTCTTAgTAtTcTtATAGGAtTac
Position: -134
Score: 5.4
Sequence: TAATTCTTAGTAAACCTATTGGAATTA
Position: -52
Score: 5.9
Sequence: TAATTCCTACTAAAAAACTAAGAATAA
Locus tag: Sca_0059
Sca_0059 -134 5.4 TAATTCTTAGTAAACCTATTGGAATTA
-52 5.9 TAATTCCTACTAAAAAACTAAGAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysJ
Ortholog function: sulfite reductase [NADPH] flavoprotein, alpha-component
Staphylococcus aureus subsp. aureus N315 SA2413 -257 4.7 TAATAAATAGTAAATAAATAAAAAATA
Staphylococcus capitis SK14 STACA0001_1811 -246 4.7 TAAAGCATAGTATTCCGATAAGATATA
Staphylococcus epidermidis ATCC 12228 SE2180 -273 4.7 CAAAACATAGTATTCCGATAAGAAATA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0059 -134 5.4 TAATTCTTAGTAAACCTATTGGAATTA
-52 5.9 TAATTCCTACTAAAAAACTAAGAATAA
Staphylococcus haemolyticus JCSC1435 SH0414 -152 4.5 TAAAACATAGTATTCTGATATGTTTTG
-68 5.6 TTATTCTGACAATTCTGATAGGTATTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2408 -152 4.5 AATAACCTAGTATTCGTATCGGAAATA
-58 4.6 TTAAACCTATTTAGACAATAATTATAA
Position: -105
Score: 5.4
Sequence: TAAATCCTTGTAAACCAATAAGAATAA
Locus tag: Sca_0062
Sca_0062 -105 5.4 TAAATCCTTGTAAACCAATAAGAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytnM
Ortholog function: conserved membrane protein YtnM
Staphylococcus capitis SK14 STACA0001_1807 -246 4.7 TAAAGCATAGTATTCCGATAAGATATA
Staphylococcus epidermidis ATCC 12228 SE2176 -273 4.7 CAAAACATAGTATTCCGATAAGAAATA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0062 -105 5.4 TAAATCCTTGTAAACCAATAAGAATAA
Staphylococcus haemolyticus JCSC1435 SH0418 -152 4.5 TAAAACATAGTATTCTGATATGTTTTG
-68 5.6 TTATTCTGACAATTCTGATAGGTATTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2403 -152 4.5 AATAACCTAGTATTCGTATCGGAAATA
-58 4.6 TTAAACCTATTTAGACAATAATTATAA
Position: -92
Score: 5.6
Sequence: TAATCCATATCAGTATAGTAGGAATAA
Locus tag: Sca_0086
Sca_0086 -92 5.6 TAATCCATATCAGTATAGTAGGAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mccA
Ortholog function: cystathionine beta-synthase
Staphylococcus aureus subsp. aureus N315 SA0418 -88 5.8 TAATTCTTATCTGAAAAGTAAGAATTA
Staphylococcus capitis SK14 STACA0001_1480 -96 5.4 TAATTCATACCTGATAAGTAAGAATTT
Staphylococcus epidermidis ATCC 12228 SE2324 -96 5.7 TAATTCATATCTGATAAGTAAGAATTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0086 -92 5.6 TAATCCATATCAGTATAGTAGGAATAA
Staphylococcus haemolyticus JCSC1435 SH2549 -109 5.4 TAATTCATAGTGATTGAGTAAGAATTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0252 -144 5.1 GTATGCTTACTGAAAAAGTAGGAATTA
-57 5 TAATTCTTATCGGTATAGTAAGGTATT
Macrococcus caseolyticus JCSC5402 MCCL_1789 -46 5.6 TAATCCCGAGTTATCTGATAAGAATAA
Position: -143
Score: 4.4
Sequence: GATATCCGATGAAATAGCTAAGATATA
Locus tag: Sca_0164
Sca_0164 -143 4.4 GATATCCGATGAAATAGCTAAGATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysK
Ortholog function: cysteine synthase
Staphylococcus aureus subsp. aureus N315 SA0471 -55 5.1 TATATCCGATAAATAAACTAAGATTTC
Staphylococcus capitis SK14 STACA0001_2088 -57 4.9 TATATCCGATAGGAAAACTAAGTTTTA
Staphylococcus epidermidis ATCC 12228 SE2270 -58 4.8 TATATCCGATAGAAAAACTAAGTATTG
Staphylococcus carnosus subsp. carnosus TM300 Sca_0164 -143 4.4 GATATCCGATGAAATAGCTAAGATATA
Staphylococcus haemolyticus JCSC1435 SH2497 -56 4.9 TATATCCGATAGAAAAACTAAGTTTTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2243 -55 5.1 TATATCCGATTGAAAAAGTAGGTTTTA
Macrococcus caseolyticus JCSC5402 MCCL_1900 -50 5.4 TAAATCCGATAAGCGTAATAAGAATAA
Position: -38
Score: 4.8
Sequence: TAAAACTTACTAACATTATCGGAAAAG
Locus tag: Sca_1551
Sca_1551 -38 4.8 TAAAACTTACTAACATTATCGGAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1850
Ortholog function: putative transporter for thiosulphate
Staphylococcus aureus subsp. aureus N315 SA1850 -40 5.2 TAATACATACTAAACTTATCGGAAATG
Staphylococcus carnosus subsp. carnosus TM300 Sca_1551 -38 4.8 TAAAACTTACTAACATTATCGGAAAAG
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0834 -37 5.1 TTAATCTTATTGATTTTATCGGGAAAG
Position: -110
Score: 4.7
Sequence: TTATCCCGAGTAAACTTATCAACTTAA
Locus tag: Sca_1637
Sca_1637 -110 4.7 TTATCCCGAGTAAACTTATCAACTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: luxS
Ortholog function: S-ribosylhomocysteinase
Staphylococcus aureus subsp. aureus N315 SA1936 -244 4.8 GAATTATTACTTATTCTATCGGTTTTA
Staphylococcus capitis SK14 STACA0001_0838 -193 5.5 TAATTATTACTTATTCTATCGGAATAA
Staphylococcus epidermidis ATCC 12228 SE1732 -182 5.6 TAATTATTACTTATTTTATCGGATTTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1637 -110 4.7 TTATCCCGAGTAAACTTATCAACTTAA
Staphylococcus haemolyticus JCSC1435 SH0901 -182 5.6 TAATTATTACTTATTTTATCGGATTTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0751 -159 5.1 TAATTATTACTTATTCTATCGGGTTTA
Macrococcus caseolyticus JCSC5402 MCCL_1791 -46 5.6 TAATCCCGAGTTATCTGATAAGAATAA
Position: -56
Score: 4.4
Sequence: TTAATCCGAGTGATACACTAAACTTAA
Locus tag: Sca_1777
Sca_1777 -56 4.4 TTAATCCGAGTGATACACTAAACTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA2080
Ortholog function: putative acyl-CoA dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA2080 -62 4.6 TAAAGTCGAGTGTTAAACTAGGAATAA
Staphylococcus capitis SK14 STACA0001_1208 -57 4.2 AAAAGTCGAGTGTTAAACTAGGATTAA
Staphylococcus epidermidis ATCC 12228 SE1858 -65 4.4 TAAAGTCGAGTGTTAAACTATGAATAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1777 -56 4.4 TTAATCCGAGTGATACACTAAACTTAA
Staphylococcus haemolyticus JCSC1435 SH0767 -266 4.4 TAATGTCGAGTGATAAACTAGGTTTAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0622 -110 5.1 TAAATCTTATCGGTAAAGTAAGGATTT
Macrococcus caseolyticus JCSC5402 MCCL_0131 -256 4.5 TATTTCCTAGATAATAAATAATGTATT
Position: -40
Score: 5.4
Sequence: TTATTCCGATGAGAATGATAAGGATAA
Locus tag: Sca_1910
Sca_1910 -40 5.4 TTATTCCGATGAGAATGATAAGGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tcyA
Ortholog function: L-cystine uptake ABC transporter, L-cystine-binding protein TcyA
Staphylococcus aureus subsp. aureus N315 SA2202 -40 6.2 TTATTCCGATTAGAATAATAAGAATAA
Staphylococcus capitis SK14 STACA0001_1063 -40 6 TTATTCCGATTAGAATAATAAGATTAA
Staphylococcus epidermidis ATCC 12228 SE1993 -40 6.2 TTATTCCGATTAGAATAATAAGAATAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1910 -40 5.4 TTATTCCGATGAGAATGATAAGGATAA
Staphylococcus haemolyticus JCSC1435 SH0639 -41 5.9 TTATTCTGACTAATCTAATAGGAATAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0242 -37 5.8 TTATTCCGATAAGAATAATAAGAATAG
Macrococcus caseolyticus JCSC5402 MCCL_1425 -38 5.3 CTATTCCGAGTAAATTGATATGAATAG
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