Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TreR regulog to Shewanella frigidimarina NCIMB 400

Reference regulog properties
Source regulog: TreR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella frigidimarina NCIMB 400
Orthologous TF(s) Sfri_3504
Regulated genes 3
Built upon 11 sites [see more]
Predicted regulatory interactions in Shewanella frigidimarina NCIMB 400
Locus tag Position Score Sequence
Position: -133
Score: 6.5
Sequence: AAATGCAAACGTTTGCATAA
Position: -110
Score: 6.4
Sequence: TATTGCAAACGTTTGCATTG
Locus tag: Sfri_3503
Sfri_3503 -133 6.5 AAATGCAAACGTTTGCATAA
-110 6.4 TATTGCAAACGTTTGCATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp(Tre)
Ortholog function: Trehalose-regulated TonB-dependent outer membrane receptor
Shewanella frigidimarina NCIMB 400 Sfri_3503 -133 6.5 AAATGCAAACGTTTGCATAA
-110 6.4 TATTGCAAACGTTTGCATTG
Shewanella woodyi ATCC 51908 Swoo_1434 -160 6.4 AAATGCAAACGATTGCAAAA
-137 6 AATTGCAATCGTTTGCAAGC
Position: -126
Score: 6.4
Sequence: CAATGCAAACGTTTGCAATA
Position: -103
Score: 6.5
Sequence: TTATGCAAACGTTTGCATTT
Locus tag: Sfri_3504
Sfri_3504 -126 6.4 CAATGCAAACGTTTGCAATA
-103 6.5 TTATGCAAACGTTTGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Transcriptional regulator of trehalose utilization, LacI family
Shewanella frigidimarina NCIMB 400 Sfri_3504 -126 6.4 CAATGCAAACGTTTGCAATA
-103 6.5 TTATGCAAACGTTTGCATTT
Shewanella woodyi ATCC 51908 Swoo_1435 -106 6 GCTTGCAAACGATTGCAATT
-83 6.4 TTTTGCAATCGTTTGCATTT
Position: -72
Score: 6.5
Sequence: AAATGCAAACGATTGCATTA
Locus tag: Sfri_3505
Sfri_3505 -72 6.5 AAATGCAAACGATTGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treT
Ortholog function: Predicted trehalose permease, MFS family, FucP subfamily
Shewanella frigidimarina NCIMB 400 Sfri_3505 -72 6.5 AAATGCAAACGATTGCATTA
Shewanella woodyi ATCC 51908 Swoo_1438 -175 6.4 TTTTGCAAACGATTGCAAAA