Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SoxR regulog to Shewanella frigidimarina NCIMB 400

Reference regulog properties
Source regulog: SoxR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Superoxide stress response
Effector: Paraquat
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella frigidimarina NCIMB 400
Orthologous TF(s) Sfri_1565
Regulated genes 2
Built upon 12 sites [see more]
Predicted regulatory interactions in Shewanella frigidimarina NCIMB 400
Locus tag Position Score Sequence
Position: -64
Score: 7
Sequence: ACCTAAAGCTAACTTGAGGT
Locus tag: Sfri_1565
Sfri_1565 -64 7 ACCTAAAGCTAACTTGAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxR
Ortholog function: Redox-sensitive transcriptional activator, MerR family
Shewanella denitrificans OS217 Sden_2125 -116 7.3 ACCTCAAGTTAGCTTGAGGT
Shewanella frigidimarina NCIMB 400 Sfri_1565 -64 7 ACCTAAAGCTAACTTGAGGT
Shewanella piezotolerans WP3 swp_2307 -49 6 ATCTCAAGTTAACTTTAGAT
Position: -57
Score: 7
Sequence: ACCTCAAGTTAGCTTTAGGT
Locus tag: Sfri_1566
Sfri_1566 -57 7 ACCTCAAGTTAGCTTTAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF00903
Ortholog function: Glyoxalase/bleomycin resistance protein/dioxygenase
Shewanella denitrificans OS217 Sden_2124 -56 7.3 ACCTCAAGCTAACTTGAGGT
Shewanella frigidimarina NCIMB 400 Sfri_1566 -57 7 ACCTCAAGTTAGCTTTAGGT
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