Propagation of ScrR regulog to Shewanella frigidimarina NCIMB 400
| Source regulog: | ScrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Sucrose utilization |
| Effector: | Sucrose |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella frigidimarina NCIMB 400 |
| Orthologous TF(s) | Sfri_3991 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -147
Score: 6.8 Sequence: AACTTAATCGATTAAGTC
Locus tag: Sfri_3988
|
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| Sfri_3988 | -147 | 6.8 | AACTTAATCGATTAAGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp(Scr) | ||||
| Ortholog function: Predicted sucrose-specific TonB-dependent receptor | ||||
| Shewanella sp ANA-3 | Shewana3_0068 | -125 | 6.9 | AACTTAATCGATTAAGAT |
| Shewanella sp MR-4 | Shewmr4_0066 | -124 | 6.9 | AACTTAATCGATTAAGAT |
| Shewanella sp MR-7 | Shewmr7_0064 | -124 | 6.9 | AACTTAATCGATTAAGAT |
| Shewanella baltica OS155 | Sbal_4286 | -143 | 7.1 | AACTTAATCGATTAAGTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3988 | -147 | 6.8 | AACTTAATCGATTAAGTC |
|
Position: -156
Score: 7.1 Sequence: AACTTAATCGATTAAGTT
Locus tag: Sfri_3989
|
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| Sfri_3989 | -156 | 7.1 | AACTTAATCGATTAAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scrT | ||||
| Ortholog function: Predicted sucrose permease, MFS family, FucP subfamily | ||||
| Shewanella sp ANA-3 | Shewana3_0067 | -186 | 7.1 | AACTTAATCGATTAAGTT |
| Shewanella sp MR-4 | Shewmr4_0065 | -186 | 7.1 | AACTTAATCGATTAAGTT |
| Shewanella sp MR-7 | Shewmr7_0063 | -186 | 7.1 | AACTTAATCGATTAAGTT |
| Shewanella baltica OS155 | Sbal_4287 | -190 | 7.1 | AACTTAATCGATTAAGTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3989 | -156 | 7.1 | AACTTAATCGATTAAGTT |
|
Position: -50
Score: 7.1 Sequence: AACTTAATCGATTAAGTT
Locus tag: Sfri_3990
|
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| Sfri_3990 | -50 | 7.1 | AACTTAATCGATTAAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scrP | ||||
| Ortholog function: Sucrose phosphorylase (EC 2.4.1.7) | ||||
| Shewanella sp ANA-3 | Shewana3_0066 | -88 | 7.1 | AACTTAATCGATTAAGTT |
| Shewanella sp MR-4 | Shewmr4_0064 | -88 | 7.1 | AACTTAATCGATTAAGTT |
| Shewanella sp MR-7 | Shewmr7_0062 | -88 | 7.1 | AACTTAATCGATTAAGTT |
| Shewanella baltica OS155 | Sbal_4288 | -88 | 7.1 | AACTTAATCGATTAAGTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3990 | -50 | 7.1 | AACTTAATCGATTAAGTT |
|
Position: -90
Score: 6.6 Sequence: AACTTAATCGAATAAGTT
Locus tag: Sfri_4008
|
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| Sfri_4008 | -90 | 6.6 | AACTTAATCGAATAAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp(Scr)2 | ||||
| Ortholog function: predicted sucrose-specific TonB-dependent receptor | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_4008 | -90 | 6.6 | AACTTAATCGAATAAGTT |