Propagation of Crp regulog to Pseudoalteromonas haloplanktis TAC125
| Source regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas haloplanktis TAC125 |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 58 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -4
Score: 3.9 Sequence: TTTTATGACCCAAACAACAAAT
Locus tag: PSHAa0098
|
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| PSHAa0098 | -4 | 3.9 | TTTTATGACCCAAACAACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemC | ||||
| Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61) | ||||
| Shewanella oneidensis MR-1 | SO4313 | -172 | 3.9 | GATTGTGCTCATGTTAACACTT |
| -132 | 4.5 | AAATGAGAGGTCCATCACACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3587 | -173 | 4.1 | AAGTGTGCTTATGTTAACACTT |
| -133 | 5.2 | AAATGAGATCTGCATCACATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3726 | -173 | 4.1 | AAGTGTGCTTATGTTAACACTT |
| -133 | 5.2 | AAATGAGATCTGCATCACATTT | ||
| Shewanella sp ANA-3 | Shewana3_0386 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_0388 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_3638 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella baltica OS155 | Sbal_4000 | -132 | 4.9 | AAATGTGAAGTCCGTCACACTT |
| Shewanella denitrificans OS217 | Sden_0388 | -85 | 3.9 | AAATCTGCTTTGCTTCAAACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0440 | -167 | 4 | AATGGTGATCATCGTAGCATTT |
| Shewanella amazonensis SB2B | Sama_3254 | -89 | 5.1 | ATTTGCGATAGAGATCACATTT |
| Shewanella loihica PV-4 | Shew_0318 | -119 | 4.7 | ATTTGAGAGCTGGATCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_0373 | -133 | 5 | AAATGCGATCAAGATCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3917 | -133 | 5.1 | AAATGTGATCAACATCACGCTT |
| Shewanella piezotolerans WP3 | swp_0402 | -40 | 4.3 | AAATGTAATCCGTATCGCAACA |
| Shewanella sediminis HAW-EB3 | Ssed_4133 | -133 | 4.9 | AAATGAGATCAAGATCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0483 | -229 | 4.6 | AAATGAGACCAAGATCACACTT |
|
Position: -178
Score: 4.1 Sequence: TATTGTGCCGATGATAGCATAT
Locus tag: PSHAa0361
|
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| PSHAa0361 | -178 | 4.1 | TATTGTGCCGATGATAGCATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: prlC | ||||
| Ortholog function: Oligopeptidase A (EC 3.4.24.70) | ||||
| Shewanella oneidensis MR-1 | SO4699 | -136 | 4.2 | AATTGAGAACTGGCTCACTTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0087 | -178 | 4.3 | AATTGAGAACTAGTTCACTTTT |
| Shewanella sp W3-18-1 | Sputw3181_3978 | -178 | 4.3 | AATTGAGAACTAGTTCACTTTT |
| Shewanella sp ANA-3 | Shewana3_4051 | -136 | 4.6 | AATTGTGAACTGGTTCGCTTTT |
| Shewanella sp MR-4 | Shewmr4_3842 | -136 | 4.3 | AATTGTGAACTGAGTCGCTTTT |
| Shewanella sp MR-7 | Shewmr7_3935 | -136 | 4.3 | AATTGTGAACTGAGTCGCTTTT |
| Shewanella baltica OS155 | Sbal_0124 | -136 | 4.3 | AAATGCGAACGAGTTCACTTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3874 | -226 | 4 | AATTGGGATCTTAGTCACTCTA |
| Shewanella loihica PV-4 | Shew_3657 | -247 | 3.8 | ATTTGCGATCCGCTTGGCAATA |
| Shewanella pealeana ATCC 700345 | Spea_4065 | -143 | 3.9 | AAACTTGATTAAGATCGCGGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0193 | -192 | 4.4 | ATTTGCGACGTGGTTTACAATA |
| -142 | 4.2 | AAATTTGATCTAGATCCTAGAT | ||
| Shewanella piezotolerans WP3 | swp_4926 | -311 | 3.7 | ATTTGCGAGGCGCTTTGCAATA |
| -261 | 3.6 | AAAATTGACTTTAGTCAAAGAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0145 | -210 | 4.1 | ATTTGAGAAGTAATTCTCAATA |
| Shewanella woodyi ATCC 51908 | Swoo_0124 | -172 | 4.2 | TTTTTTGAGCTGGGTCAAAGTA |
|
Position: 24
Score: 4 Sequence: AAACGTGATGGTGTACAAGATT
Locus tag: PSHAa1650
|
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| PSHAa1650 | 24 | 4 | AAACGTGATGGTGTACAAGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1927.1 | ||||
| Ortholog function: Succinate dehydrogenase hydrophobic membrane anchor protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2272 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_1736 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella baltica OS155 | Sbal_2518 | -66 | 3.8 | TGCCGTGATTCACATCCCAGTT |
| Shewanella denitrificans OS217 | Sden_2186 | -274 | 3.7 | TGGATTGATGCAAATTACAAAA |
| -186 | 3.8 | AAGGGCGACAAACATCACAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2346 | -74 | 4.1 | ACGTGTGATGTAACTTACGTTA |
| -19 | 3.7 | AAGTTTGAAAGGAATAACAATG | ||
| Shewanella amazonensis SB2B | Sama_1424 | -80 | 3.7 | TTTTGTGACGACTGTCGCCGTG |
| Shewanella pealeana ATCC 700345 | Spea_1785 | -86 | 4.4 | AACCGTGATCTGGATCACTGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2492 | -86 | 4.9 | ATCTGTGATCTGGATCACCGAT |
| Shewanella piezotolerans WP3 | swp_2953 | -20 | 4.6 | AACTGTGACCTAGTTCACGGAT |
| Shewanella sediminis HAW-EB3 | Ssed_2817 | -86 | 4.2 | GATCGTGACCTGTGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_1834 | -87 | 4.8 | ATTTGTGATCTAAATCACGCCT |
|
Position: -222
Score: 4.2 Sequence: AAGTTTGATTGATGTCATAATA
Locus tag: PSHAa1842
|
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| PSHAa1842 | -222 | 4.2 | AAGTTTGATTGATGTCATAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccoN | ||||
| Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN | ||||
| Shewanella oneidensis MR-1 | SO2364 | -173 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| -125 | 4.1 | AAATGTGAAGGATAACGCATTG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1959 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp W3-18-1 | Sputw3181_2046 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp ANA-3 | Shewana3_2107 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-4 | Shewmr4_2006 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-7 | Shewmr7_1969 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_2201 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_4487 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella denitrificans OS217 | Sden_1851 | -182 | 4.7 | TTTTTTGATGTAGCTCAAGTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -186 | 4.4 | TTTTTTGACTTAGCTCAAGTAT |
| Shewanella amazonensis SB2B | Sama_1791 | -180 | 4.3 | TTTTTTGACACAGCTCAAGTAT |
| Shewanella loihica PV-4 | Shew_1985 | -178 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella pealeana ATCC 700345 | Spea_2214 | -219 | 4.1 | TACCTTGATCTAGATCAACTTA |
| -176 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2197 | -221 | 4.5 | AGATTTGATCTAGATCAACTTT |
| -178 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella piezotolerans WP3 | swp_2572 | -221 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -178 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2211 | -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT |
| Shewanella woodyi ATCC 51908 | Swoo_2425 | -220 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
|
Position: -42
Score: 3.9 Sequence: TAATGTAAATGATCTCTCACAA
Locus tag: PSHAa1932
|
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| PSHAa1932 | -42 | 3.9 | TAATGTAAATGATCTCTCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2589 | ||||
| Ortholog function: isopenicillin N synthase | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_1487 | -55 | 4 | AAGTGTGACTAAGGTTACCATT |
| Shewanella loihica PV-4 | Shew_1590 | -85 | 4.3 | AAACGTGATTTTTATCACACCC |
| Shewanella pealeana ATCC 700345 | Spea_2507 | -84 | 4.2 | AAGCGTGATCTAGCTCACTCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1764 | -84 | 4.4 | CAGCGTGATCTACGTCACATTG |
| Shewanella piezotolerans WP3 | swp_3059 | -87 | 4.2 | GAATGTGATCTAGCTCACAGGT |
| Shewanella sediminis HAW-EB3 | Ssed_2637 | -51 | 5.1 | AAACGTGATTTCAATCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_2030 | -82 | 4.2 | CAAGGTGATTTATCTCACACAG |
|
Position: -231
Score: 3.6 Sequence: AATTTTAATCGAAATAACCGTA
Locus tag: PSHAa1951
|
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| PSHAa1951 | -231 | 3.6 | AATTTTAATCGAAATAACCGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2535 | ||||
| Ortholog function: Predicted glutamine amidotransferase | ||||
| Shewanella oneidensis MR-1 | SO2535 | -194 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1792 | -193 | 4.7 | TTTATTGATGGCGATCACAATT |
| Shewanella sp W3-18-1 | Sputw3181_2233 | -193 | 4.7 | TTTATTGATGGCGATCACAATT |
| Shewanella sp ANA-3 | Shewana3_2322 | -133 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella sp MR-4 | Shewmr4_2145 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella sp MR-7 | Shewmr7_2222 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella baltica OS155 | Sbal_2305 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella denitrificans OS217 | Sden_1765 | -204 | 3.7 | TATGATGATCCTATTCACAAGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1870 | -203 | 3.9 | ATTATTGATCTCATTCACAAGA |
| Shewanella amazonensis SB2B | Sama_1869 | -195 | 3.9 | ATAAGCGATCCTGATCACAAGT |
| Shewanella loihica PV-4 | Shew_2107 | -191 | 4.6 | TTATATGACCATAATCACAATT |
| Shewanella pealeana ATCC 700345 | Spea_2392 | -196 | 4.4 | TTTTGAGTTCTATCTCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1891 | -199 | 4.2 | TTTTGAGGTTTATCTCACAATT |
| Shewanella sediminis HAW-EB3 | Ssed_2000 | -191 | 4.5 | TTTATTGATCATAATCACAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2603 | -190 | 4.8 | TATATTGATCGATATCACAATT |
|
Position: -285
Score: 4.2 Sequence: TTAGCTGATTTTATTCACATTT
Position: -217
Score: 4 Sequence: AAAAGTGCCTTTTAGCACAATT
Locus tag: PSHAa2725
|
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| PSHAa2725 | -285 | 4.2 | TTAGCTGATTTTATTCACATTT | |
| -217 | 4 | AAAAGTGCCTTTTAGCACAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4118 | ||||
| Ortholog function: NADP-dependent malic enzyme (EC 1.1.1.40) | ||||
| Shewanella oneidensis MR-1 | SO4118 | -318 | 4.4 | TATTGTAATTTAGTCAACATTT |
| -132 | 4.3 | AAATGTGACCTAATTGACGTAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0554 | -313 | 4 | TATTGTAATTTAGCCAAAATTT |
| -114 | 3.8 | GAATATGACAGGTTTCACGTTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3618 | -313 | 4 | TATTGTAATTTAGCCAAAATTT |
| -114 | 3.8 | GAATATGACAGGTTTCACGTTT | ||
| Shewanella sp ANA-3 | Shewana3_3669 | -312 | 4.2 | TATTGTAATTTAATCAACATTT |
| -119 | 4.2 | GGATATGATGGGTTTCACATTT | ||
| Shewanella sp MR-4 | Shewmr4_3492 | -312 | 4.2 | TATTGTAATTTAATCAACATTT |
| Shewanella sp MR-7 | Shewmr7_0460 | -312 | 4.2 | TATTGTAATTTAATCAACATTT |
| Shewanella denitrificans OS217 | Sden_3353 | -298 | 3.8 | TCTTGTTATTTAAACAACATTT |
| -197 | 4.2 | TAATGTGATGCATAGCAGCCTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3757 | -303 | 4.1 | TATTGTTATTTAGACAAAATAA |
| Shewanella pealeana ATCC 700345 | Spea_3774 | -196 | 3.8 | TATAGCGATAAAGTTAAAAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3859 | -196 | 3.8 | TATAGCGATAAAGTTAAAAAAT |
| Shewanella piezotolerans WP3 | swp_0481 | -181 | 3.8 | TATAGCGATAAAGTTAAAATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4423 | -345 | 3.8 | AAGTTTTATCTAGTTAACCCTT |
|
Position: -33
Score: 3.9 Sequence: CAATGTGATCATTTTTAAGTTT
Locus tag: PSHAa2753
|
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| PSHAa2753 | -33 | 3.9 | CAATGTGATCATTTTTAAGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: engB | ||||
| Ortholog function: GTP-binding protein EngB | ||||
| Shewanella oneidensis MR-1 | SO4667 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3907 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp W3-18-1 | Sputw3181_0044 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp ANA-3 | Shewana3_4110 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-4 | Shewmr4_3906 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-7 | Shewmr7_3998 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella baltica OS155 | Sbal_0052 | -95 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella denitrificans OS217 | Sden_3621 | -182 | 3.8 | TATTATGCTCGAAATAATATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3944 | -104 | 4.7 | TAATGTGATCAGGCTAATATTT |
| Shewanella amazonensis SB2B | Sama_0092 | -96 | 4.1 | ATATGTGATCGGGGCAATATTT |
| Shewanella loihica PV-4 | Shew_3715 | -95 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella pealeana ATCC 700345 | Spea_0101 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4221 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella piezotolerans WP3 | swp_5074a | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0095 | -95 | 4.7 | TTATGTGATCGAGGTAATATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0058 | -110 | 4.8 | TATTGTGATCGAGGTAATATTT |
|
Position: -250
Score: 4.2 Sequence: TTATTTGAAATTATTTACATTT
Locus tag: PSHAb0420
|
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| PSHAb0420 | -250 | 4.2 | TTATTTGAAATTATTTACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sbal_1323 | ||||
| Ortholog function: HTH-type transcriptional regulator BetI | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_1948 | -111 | 4.9 | TGTTGTGATCTATATCAAGTTA |
| Shewanella pealeana ATCC 700345 | Spea_1009 | -164 | 4.1 | ATGCGTGAGGTGAGTCACGCTT |
| -135 | 3.7 | AAGCTTGATCGTTATAACCCTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1059 | -163 | 4.3 | ATCTGTGAACCTTGTCGCATTT |
| Shewanella piezotolerans WP3 | swp_3809 | -141 | 4.7 | TTCTGTGATTCAGGTCGCAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_1121 | -140 | 4.3 | ATCTGTGATGCAAGTCGCAATC |
|
Position: -77
Score: 4 Sequence: ATATTTGTTGTATGTTACATTT
Locus tag: PSHAb0551
|
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| PSHAb0551 | -77 | 4 | ATATTTGTTGTATGTTACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpK | ||||
| Ortholog function: glycerol kinase (EC 2.7.1.30) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0476 | -195 | 4.6 | AAAAGTGATTTTTATCACTAAA |
| Shewanella sp W3-18-1 | Sputw3181_0379 | -195 | 4.6 | AAAAGTGATTTTTATCACTAAA |
| Shewanella sp ANA-3 | Shewana3_3756 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella sp MR-4 | Shewmr4_3583 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella sp MR-7 | Shewmr7_0373 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella baltica OS155 | Sbal_0391 | -207 | 4.3 | AATGGTGATATTGGTCACTAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3815 | -169 | 4.9 | AAGTTTGATCATGATCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_0444 | -114 | 3.8 | TTTTGTGCTGTTTTTTATAAAG |