Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Pseudoalteromonas haloplanktis TAC125

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Pseudoalteromonas haloplanktis TAC125
Orthologous TF(s) No orthologous TFs found
Regulated genes 58
Built upon 2713 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas haloplanktis TAC125
Locus tag Position Score Sequence
Position: -4
Score: 3.9
Sequence: TTTTATGACCCAAACAACAAAT
Locus tag: PSHAa0098
PSHAa0098 -4 3.9 TTTTATGACCCAAACAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61)
Shewanella oneidensis MR-1 SO4313 -172 3.9 GATTGTGCTCATGTTAACACTT
-132 4.5 AAATGAGAGGTCCATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3587 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp W3-18-1 Sputw3181_3726 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp ANA-3 Shewana3_0386 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-4 Shewmr4_0388 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-7 Shewmr7_3638 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella baltica OS155 Sbal_4000 -132 4.9 AAATGTGAAGTCCGTCACACTT
Shewanella denitrificans OS217 Sden_0388 -85 3.9 AAATCTGCTTTGCTTCAAACAT
Shewanella frigidimarina NCIMB 400 Sfri_0440 -167 4 AATGGTGATCATCGTAGCATTT
Shewanella amazonensis SB2B Sama_3254 -89 5.1 ATTTGCGATAGAGATCACATTT
Shewanella loihica PV-4 Shew_0318 -119 4.7 ATTTGAGAGCTGGATCACACTT
Shewanella pealeana ATCC 700345 Spea_0373 -133 5 AAATGCGATCAAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_3917 -133 5.1 AAATGTGATCAACATCACGCTT
Shewanella piezotolerans WP3 swp_0402 -40 4.3 AAATGTAATCCGTATCGCAACA
Shewanella sediminis HAW-EB3 Ssed_4133 -133 4.9 AAATGAGATCAAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_0483 -229 4.6 AAATGAGACCAAGATCACACTT
Position: -178
Score: 4.1
Sequence: TATTGTGCCGATGATAGCATAT
Locus tag: PSHAa0361
PSHAa0361 -178 4.1 TATTGTGCCGATGATAGCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: prlC
Ortholog function: Oligopeptidase A (EC 3.4.24.70)
Shewanella oneidensis MR-1 SO4699 -136 4.2 AATTGAGAACTGGCTCACTTTT
Shewanella putrefaciens CN-32 Sputcn32_0087 -178 4.3 AATTGAGAACTAGTTCACTTTT
Shewanella sp W3-18-1 Sputw3181_3978 -178 4.3 AATTGAGAACTAGTTCACTTTT
Shewanella sp ANA-3 Shewana3_4051 -136 4.6 AATTGTGAACTGGTTCGCTTTT
Shewanella sp MR-4 Shewmr4_3842 -136 4.3 AATTGTGAACTGAGTCGCTTTT
Shewanella sp MR-7 Shewmr7_3935 -136 4.3 AATTGTGAACTGAGTCGCTTTT
Shewanella baltica OS155 Sbal_0124 -136 4.3 AAATGCGAACGAGTTCACTTTT
Shewanella frigidimarina NCIMB 400 Sfri_3874 -226 4 AATTGGGATCTTAGTCACTCTA
Shewanella loihica PV-4 Shew_3657 -247 3.8 ATTTGCGATCCGCTTGGCAATA
Shewanella pealeana ATCC 700345 Spea_4065 -143 3.9 AAACTTGATTAAGATCGCGGAT
Shewanella halifaxensis HAW-EB4 Shal_0193 -192 4.4 ATTTGCGACGTGGTTTACAATA
-142 4.2 AAATTTGATCTAGATCCTAGAT
Shewanella piezotolerans WP3 swp_4926 -311 3.7 ATTTGCGAGGCGCTTTGCAATA
-261 3.6 AAAATTGACTTTAGTCAAAGAT
Shewanella sediminis HAW-EB3 Ssed_0145 -210 4.1 ATTTGAGAAGTAATTCTCAATA
Shewanella woodyi ATCC 51908 Swoo_0124 -172 4.2 TTTTTTGAGCTGGGTCAAAGTA
Position: 24
Score: 4
Sequence: AAACGTGATGGTGTACAAGATT
Locus tag: PSHAa1650
PSHAa1650 24 4 AAACGTGATGGTGTACAAGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1927.1
Ortholog function: Succinate dehydrogenase hydrophobic membrane anchor protein
Shewanella putrefaciens CN-32 Sputcn32_2272 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1736 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2518 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2186 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2346 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1424 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1785 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2492 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2953 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2817 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1834 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -222
Score: 4.2
Sequence: AAGTTTGATTGATGTCATAATA
Locus tag: PSHAa1842
PSHAa1842 -222 4.2 AAGTTTGATTGATGTCATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1 SO2364 -173 4.3 TTTTTTGACATGGCTCAAGTAT
-125 4.1 AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32 Sputcn32_1959 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1 Sputw3181_2046 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3 Shewana3_2107 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4 Shewmr4_2006 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7 Shewmr7_1969 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155 Sbal_2201 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155 Sbal_4487 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217 Sden_1851 -182 4.7 TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400 Sfri_2010 -186 4.4 TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B Sama_1791 -180 4.3 TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4 Shew_1985 -178 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345 Spea_2214 -219 4.1 TACCTTGATCTAGATCAACTTA
-176 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_2197 -221 4.5 AGATTTGATCTAGATCAACTTT
-178 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3 swp_2572 -221 4.3 TAGCTTGATCTAGATCAACTTT
-178 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3 Ssed_2211 -177 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2425 -220 4.3 TAGCTTGATCTAGATCAACTTT
-177 4.4 TTTTTTGACATAGCTCAAGTAT
Position: -42
Score: 3.9
Sequence: TAATGTAAATGATCTCTCACAA
Locus tag: PSHAa1932
PSHAa1932 -42 3.9 TAATGTAAATGATCTCTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2589
Ortholog function: isopenicillin N synthase
Shewanella frigidimarina NCIMB 400 Sfri_1487 -55 4 AAGTGTGACTAAGGTTACCATT
Shewanella loihica PV-4 Shew_1590 -85 4.3 AAACGTGATTTTTATCACACCC
Shewanella pealeana ATCC 700345 Spea_2507 -84 4.2 AAGCGTGATCTAGCTCACTCAC
Shewanella halifaxensis HAW-EB4 Shal_1764 -84 4.4 CAGCGTGATCTACGTCACATTG
Shewanella piezotolerans WP3 swp_3059 -87 4.2 GAATGTGATCTAGCTCACAGGT
Shewanella sediminis HAW-EB3 Ssed_2637 -51 5.1 AAACGTGATTTCAATCACACTT
Shewanella woodyi ATCC 51908 Swoo_2030 -82 4.2 CAAGGTGATTTATCTCACACAG
Position: -231
Score: 3.6
Sequence: AATTTTAATCGAAATAACCGTA
Locus tag: PSHAa1951
PSHAa1951 -231 3.6 AATTTTAATCGAAATAACCGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2535
Ortholog function: Predicted glutamine amidotransferase
Shewanella oneidensis MR-1 SO2535 -194 4.4 TTTGTTGATTGCGATCACAATT
Shewanella putrefaciens CN-32 Sputcn32_1792 -193 4.7 TTTATTGATGGCGATCACAATT
Shewanella sp W3-18-1 Sputw3181_2233 -193 4.7 TTTATTGATGGCGATCACAATT
Shewanella sp ANA-3 Shewana3_2322 -133 4.4 TTTGTTGATTGCGATCACAATT
Shewanella sp MR-4 Shewmr4_2145 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella sp MR-7 Shewmr7_2222 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella baltica OS155 Sbal_2305 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella denitrificans OS217 Sden_1765 -204 3.7 TATGATGATCCTATTCACAAGT
Shewanella frigidimarina NCIMB 400 Sfri_1870 -203 3.9 ATTATTGATCTCATTCACAAGA
Shewanella amazonensis SB2B Sama_1869 -195 3.9 ATAAGCGATCCTGATCACAAGT
Shewanella loihica PV-4 Shew_2107 -191 4.6 TTATATGACCATAATCACAATT
Shewanella pealeana ATCC 700345 Spea_2392 -196 4.4 TTTTGAGTTCTATCTCACAATT
Shewanella halifaxensis HAW-EB4 Shal_1891 -199 4.2 TTTTGAGGTTTATCTCACAATT
Shewanella sediminis HAW-EB3 Ssed_2000 -191 4.5 TTTATTGATCATAATCACAATT
Shewanella woodyi ATCC 51908 Swoo_2603 -190 4.8 TATATTGATCGATATCACAATT
Position: -285
Score: 4.2
Sequence: TTAGCTGATTTTATTCACATTT
Position: -217
Score: 4
Sequence: AAAAGTGCCTTTTAGCACAATT
Locus tag: PSHAa2725
PSHAa2725 -285 4.2 TTAGCTGATTTTATTCACATTT
-217 4 AAAAGTGCCTTTTAGCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4118
Ortholog function: NADP-dependent malic enzyme (EC 1.1.1.40)
Shewanella oneidensis MR-1 SO4118 -318 4.4 TATTGTAATTTAGTCAACATTT
-132 4.3 AAATGTGACCTAATTGACGTAT
Shewanella putrefaciens CN-32 Sputcn32_0554 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp W3-18-1 Sputw3181_3618 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp ANA-3 Shewana3_3669 -312 4.2 TATTGTAATTTAATCAACATTT
-119 4.2 GGATATGATGGGTTTCACATTT
Shewanella sp MR-4 Shewmr4_3492 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella sp MR-7 Shewmr7_0460 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella denitrificans OS217 Sden_3353 -298 3.8 TCTTGTTATTTAAACAACATTT
-197 4.2 TAATGTGATGCATAGCAGCCTT
Shewanella frigidimarina NCIMB 400 Sfri_3757 -303 4.1 TATTGTTATTTAGACAAAATAA
Shewanella pealeana ATCC 700345 Spea_3774 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella halifaxensis HAW-EB4 Shal_3859 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella piezotolerans WP3 swp_0481 -181 3.8 TATAGCGATAAAGTTAAAATTT
Shewanella woodyi ATCC 51908 Swoo_4423 -345 3.8 AAGTTTTATCTAGTTAACCCTT
Position: -33
Score: 3.9
Sequence: CAATGTGATCATTTTTAAGTTT
Locus tag: PSHAa2753
PSHAa2753 -33 3.9 CAATGTGATCATTTTTAAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1 SO4667 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32 Sputcn32_3907 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1 Sputw3181_0044 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3 Shewana3_4110 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4 Shewmr4_3906 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7 Shewmr7_3998 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155 Sbal_0052 -95 4.6 TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217 Sden_3621 -182 3.8 TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400 Sfri_3944 -104 4.7 TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B Sama_0092 -96 4.1 ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4 Shew_3715 -95 4.7 TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345 Spea_0101 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4 Shal_4221 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3 swp_5074a -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3 Ssed_0095 -95 4.7 TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908 Swoo_0058 -110 4.8 TATTGTGATCGAGGTAATATTT
Position: -250
Score: 4.2
Sequence: TTATTTGAAATTATTTACATTT
Locus tag: PSHAb0420
PSHAb0420 -250 4.2 TTATTTGAAATTATTTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sbal_1323
Ortholog function: HTH-type transcriptional regulator BetI
Shewanella frigidimarina NCIMB 400 Sfri_1948 -111 4.9 TGTTGTGATCTATATCAAGTTA
Shewanella pealeana ATCC 700345 Spea_1009 -164 4.1 ATGCGTGAGGTGAGTCACGCTT
-135 3.7 AAGCTTGATCGTTATAACCCTA
Shewanella halifaxensis HAW-EB4 Shal_1059 -163 4.3 ATCTGTGAACCTTGTCGCATTT
Shewanella piezotolerans WP3 swp_3809 -141 4.7 TTCTGTGATTCAGGTCGCAAAT
Shewanella sediminis HAW-EB3 Ssed_1121 -140 4.3 ATCTGTGATGCAAGTCGCAATC
Position: -77
Score: 4
Sequence: ATATTTGTTGTATGTTACATTT
Locus tag: PSHAb0551
PSHAb0551 -77 4 ATATTTGTTGTATGTTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: glycerol kinase (EC 2.7.1.30)
Shewanella putrefaciens CN-32 Sputcn32_0476 -195 4.6 AAAAGTGATTTTTATCACTAAA
Shewanella sp W3-18-1 Sputw3181_0379 -195 4.6 AAAAGTGATTTTTATCACTAAA
Shewanella sp ANA-3 Shewana3_3756 -201 4.6 AAAAGTGATTTATCTCACTAAA
Shewanella sp MR-4 Shewmr4_3583 -201 4.6 AAAAGTGATTTATCTCACTAAA
Shewanella sp MR-7 Shewmr7_0373 -201 4.6 AAAAGTGATTTATCTCACTAAA
Shewanella baltica OS155 Sbal_0391 -207 4.3 AATGGTGATATTGGTCACTAAA
Shewanella frigidimarina NCIMB 400 Sfri_3815 -169 4.9 AAGTTTGATCATGATCACAATT
Shewanella halifaxensis HAW-EB4 Shal_0444 -114 3.8 TTTTGTGCTGTTTTTTATAAAG
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