Propagation of Fur regulog to Pseudoalteromonas haloplanktis TAC125
| Source regulog: | Fur - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas haloplanktis TAC125 |
| Orthologous TF(s) | PSHAa1641 |
| Regulated genes | 13 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -62
Score: 5.5 Sequence: AAATGATACTGGTTTTCATTA
Locus tag: PSHAa0108
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| PSHAa0108 | -62 | 5.5 | AAATGATACTGGTTTTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4743 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella oneidensis MR-1 | SO4743 | -116 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3953 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_4050 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp ANA-3 | Shewana3_4127 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-4 | Shewmr4_3922 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-7 | Shewmr7_4014 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella baltica OS155 | Sbal_4363 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4042 | -68 | 5.4 | AAATGGAAACGCTTCTCATTT |
| Shewanella amazonensis SB2B | Sama_3641 | -73 | 5.9 | AAATGCTAATCATTATCAATT |
| Shewanella loihica PV-4 | Shew_3841 | -69 | 6 | AAATAAAAACAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4236 | -69 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4287 | -68 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella piezotolerans WP3 | swp_5150 | -68 | 5.6 | GAATAAAAACAATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4483 | -66 | 6 | AAATAAAAACGATTCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4894 | -67 | 6.2 | AAATAAAAATAATTCTCATTT |
|
Position: -65
Score: 5.6 Sequence: AATTGCAAATCAATATCATTT
Locus tag: PSHAa0695
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| PSHAa0695 | -65 | 5.6 | AATTGCAAATCAATATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sden_3064 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0603 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0603 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_3569 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_3569 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella denitrificans OS217 | Sden_3064 | -122 | 6.2 | AAATAATAATGATTATCATTT |
| Shewanella denitrificans OS217 | Sden_3064 | -122 | 6.2 | AAATAATAATGATTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3717 | -90 | 5.7 | AAATGATAATGATTTCTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2549 | -195 | 5 | GATTGATAACGAATCTCAATA |
| -168 | 5.5 | GAGTGATAATTATTATCAATT | ||
| -91 | 5.6 | TAATGATAATCATTAGCAATA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3717 | -90 | 5.7 | AAATGATAATGATTTCTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2549 | -195 | 5 | GATTGATAACGAATCTCAATA |
| -168 | 5.5 | GAGTGATAATTATTATCAATT | ||
| -91 | 5.6 | TAATGATAATCATTAGCAATA | ||
| Shewanella loihica PV-4 | Shew_3097 | -136 | 5.9 | AAATGATAACCATTCCCATTT |
| Shewanella loihica PV-4 | Shew_3097 | -136 | 5.9 | AAATGATAACCATTCCCATTT |
|
Position: -32
Score: 5.3 Sequence: TATTGATAATAGTTATTATTC
Locus tag: PSHAa2663
|
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| PSHAa2663 | -32 | 5.3 | TATTGATAATAGTTATTATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fbpA | ||||
| Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA | ||||
| Shewanella oneidensis MR-1 | SO0744 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3227 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_0714 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp ANA-3 | Shewana3_3517 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-4 | Shewmr4_3347 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-7 | Shewmr7_0606 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella baltica OS155 | Sbal_0812 | -76 | 5.4 | AACTGATAAGCATTATCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0636 | -67 | 5.9 | AATTGATAACCATTATCAATT |
| Shewanella amazonensis SB2B | Sama_0666 | -57 | 5.8 | TAGTGATAATAATTATCATTA |
| Shewanella loihica PV-4 | Shew_0861 | -41 | 6.1 | AATTGATAATTATTATCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0844 | -60 | 5.8 | AATTGAGAATTATTATCAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0897 | -64 | 5.4 | AATTGAGAATTATTATCAGTC |
| Shewanella piezotolerans WP3 | swp_4107 | -60 | 5.2 | AATTGAGAACTATTATCAGCA |
| Shewanella sediminis HAW-EB3 | Ssed_0945 | -58 | 5.7 | GATTGATAATAATTATCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_0996 | -57 | 5.4 | AATTGATAACTATTATCATCG |
|
Position: -49
Score: 5 Sequence: TAATACAAATCATTATCATGT
Locus tag: PSHAa2970
|
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| PSHAa2970 | -49 | 5 | TAATACAAATCATTATCATGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1188 | ||||
| Ortholog function: Inner membrane protein with PepSY TM helix | ||||
| Shewanella oneidensis MR-1 | SO1188 | -185 | 5.4 | TTTTGATAATAAATATCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2850 | -93 | 5.2 | GTTTGATAATAAATATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_1054 | -93 | 5.2 | GTTTGATAATAAATATCATTT |
| Shewanella sp ANA-3 | Shewana3_1014 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella sp MR-4 | Shewmr4_1010 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella sp MR-7 | Shewmr7_1075 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella baltica OS155 | Sbal_3255 | -45 | 5.4 | ATTTGATAATCGATCTCATTT |
| Shewanella denitrificans OS217 | Sden_2152 | -58 | 5.8 | TATTGAGATTCATTATCATTT |
| Shewanella amazonensis SB2B | Sama_2808 | -73 | 4.8 | TGGTGAGAATTACTCTCAATT |
| Shewanella piezotolerans WP3 | swp_3069 | -102 | 4.3 | TGATCATAATTGTTTTAAATC |
|
Position: -47
Score: 5.9 Sequence: AAATGCTAATCATTATCAATT
Locus tag: PSHAb0251
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| PSHAb0251 | -47 | 5.9 | AAATGCTAATCATTATCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: irgA | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO_4523 | -50 | 6.1 | TATTGAAAATTATTATCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3503 | -52 | 5.9 | TATTGAAAATTGTTCTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0403 | -52 | 5.9 | TATTGAAAATTGTTCTCATTT |
| Shewanella sp ANA-3 | Shewana3_3929 | -49 | 6.1 | TATTGAAAATTATTATCATTT |
| Shewanella baltica OS155 | Sbal_0217 | -52 | 5.9 | TATTGAAAATTGTTCTCATTT |
|
Position: -49
Score: 5.2 Sequence: TATTGTTAATAGTTATCATTA
Locus tag: PSHAb0286
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| PSHAb0286 | -49 | 5.2 | TATTGTTAATAGTTATCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4423.1 | ||||
| Ortholog function: TonB-dependent ferric achromobactin receptor | ||||
| Shewanella oneidensis MR-1 | SO4423.1 | -98 | 5.4 | TAATAAAAATCGTTACCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0401 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0255 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp ANA-3 | Shewana3_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-4 | Shewmr4_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-7 | Shewmr7_3733 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella baltica OS155 | Sbal_0298 | -100 | 5.6 | GAATAAAAATCGTTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0392 | -54 | 5.9 | TAATGATAATGAATATCATTA |
| Shewanella amazonensis SB2B | Sama_1394 | -54 | 5 | CATTGAGAGTAATTATCATTA |
| Shewanella loihica PV-4 | Shew_1688 | -72 | 4.9 | ATATGATAATCTATATCATTC |
| Shewanella pealeana ATCC 700345 | Spea_0977 | -108 | 5.3 | AAACACTAATCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_1134 | -108 | 5.2 | CAACAATAATCATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1496 | -51 | 4.9 | AATCGAGAATGGTTATCATCC |
| Shewanella woodyi ATCC 51908 | Swoo_0587 | -62 | 5.9 | TAATGGGAATAATTATCATTT |
|
Position: -55
Score: 5.2 Sequence: TAACGATAACCATTATCATTC
Position: -22
Score: 4.8 Sequence: AAATACGAATACTTACCATTA
Locus tag: PSHAb0512
|
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| PSHAb0512 | -55 | 5.2 | TAACGATAACCATTATCATTC | |
| -22 | 4.8 | AAATACGAATACTTACCATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1482 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO1482 | -49 | 5 | GGATGGAAATCATTATCATTC |
| Shewanella putrefaciens CN-32 | Sputcn32_1237 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp W3-18-1 | Sputw3181_2867 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp ANA-3 | Shewana3_2944 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-4 | Shewmr4_2768 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-7 | Shewmr7_2846 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella baltica OS155 | Sbal_1315 | -49 | 5 | AAATGCAAATCATTACTATTC |
| Shewanella denitrificans OS217 | Sden_1445 | -48 | 5.2 | CTATGATAATCATTATCATTC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2440 | -52 | 5.6 | TTATGATAATCATTATCATTC |
| Shewanella loihica PV-4 | Shew_2690 | -51 | 6 | TATTGATAATCGTTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2930 | -51 | 6 | TAATGATAATCGTTATCATCT |
| Shewanella halifaxensis HAW-EB4 | Shal_3021 | -51 | 5.6 | TAATAAGAATCGTTATCATCT |
| Shewanella piezotolerans WP3 | swp_3568 | -51 | 5.8 | TAATGATAATGGTTATCATCA |
| Shewanella sediminis HAW-EB3 | Ssed_3242 | -49 | 5.5 | AAATGCAAATCGTTATCATTC |
| Shewanella woodyi ATCC 51908 | Swoo_3375 | -51 | 6 | TAATGATAATCGTTATCATCT |