Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TyrR regulog to Pseudoalteromonas haloplanktis TAC125

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas haloplanktis TAC125
Orthologous TF(s) PSHAa2157
Regulated genes 7
Built upon 312 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas haloplanktis TAC125
Locus tag Position Score Sequence
Position: -104
Score: 5
Sequence: GTGTAATTTAAACTTTACAG
Locus tag: PSHAa1167
PSHAa1167 -104 5 GTGTAATTTAAACTTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: Leucine dehydrogenase (EC 1.4.1.9)
Shewanella oneidensis MR-1 SO_2638 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_2238 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp W3-18-1 Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp ANA-3 Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-4 Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-7 Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella baltica OS155 Sbal_2483 -134 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella denitrificans OS217 Sden_1823 -140 4.9 GTGGCAAGCAAAATTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_2265 -178 5.2 GTGGCAAGCTAAATTTCCAC
Shewanella amazonensis SB2B Sama_2067 -147 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella loihica PV-4 Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella pealeana ATCC 700345 Spea_2543 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella piezotolerans WP3 swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Shewanella sediminis HAW-EB3 Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella woodyi ATCC 51908 Swoo_2710 -157 5.1 GTGGAAAGCAAAATTGCCAC
Position: -202
Score: 4.6
Sequence: CTGTATAGTTAACTTGCCAT
Locus tag: PSHAa1632
PSHAa1632 -202 4.6 CTGTATAGTTAACTTGCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bkdA1
Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Shewanella oneidensis MR-1 SO_2339 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella putrefaciens CN-32 Sputcn32_1885 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp W3-18-1 Sputw3181_2123 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp ANA-3 Shewana3_2131 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-4 Shewmr4_2028 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-7 Shewmr7_1947 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella baltica OS155 Sbal_4508 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella denitrificans OS217 Sden_1786 -153 4.5 GCGTAAAGCAAATTATACAA
Shewanella frigidimarina NCIMB 400 Sfri_1935 -156 4.5 TCGTAAAGCAATATATACAT
Shewanella amazonensis SB2B Sama_1709 -150 4.3 CTGTAAAGCAATTAATACAT
Shewanella loihica PV-4 Shew_1925 -175 4.7 TTGTAAAGCTAGCGATACAT
Shewanella pealeana ATCC 700345 Spea_2246 -161 4.8 ATGTAAACCAATATATACAT
Shewanella halifaxensis HAW-EB4 Shal_2234 -161 4.8 ATGTAAACCAATATATACAT
Shewanella piezotolerans WP3 swp_2606 -162 4.8 ATGTAAACCAATATATACAT
Shewanella sediminis HAW-EB3 Ssed_2329 -172 4.4 TTGTAAAGCTAAAGATACGC
Shewanella woodyi ATCC 51908 Swoo_2278 -171 4 ATGTAAAGCTAAACATACGG
Position: -162
Score: 4.4
Sequence: GTGTAATTTTAAGTGTACAA
Locus tag: PSHAa2043
PSHAa2043 -162 4.4 GTGTAATTTTAAGTGTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO_1666 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella putrefaciens CN-32 Sputcn32_1386 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp W3-18-1 Sputw3181_2715 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp ANA-3 Shewana3_2781 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp MR-4 Shewmr4_2607 -122 4.4 TTGTAATATTTACTTTACGT
Shewanella sp MR-7 Shewmr7_2674 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella baltica OS155 Sbal_1484 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella denitrificans OS217 Sden_2595 -127 4.4 TTGTATGCTTAAGTTTACAA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -121 4.1 TTGTATTTATTTGTTTACGA
Shewanella amazonensis SB2B Sama_2222 -123 4.3 TTGTAATAAAAGCTTTACGA
Shewanella loihica PV-4 Shew_1435 -87 4.7 ATGTAAATTTGAGGTTACAT
Shewanella pealeana ATCC 700345 Spea_1448 -239 4.3 GTGTCAATTTCTATATACGC
-173 4.8 GTGTAACATTAGCATTACAC
Shewanella halifaxensis HAW-EB4 Shal_1531 -133 4.3 GTGTAACAACTTCGTTACAC
Shewanella piezotolerans WP3 swp_1650 -188 4.6 CTGTAAATTATGGCTTACAA
-123 4.5 ATGTAAACTTATGGTTACGC
Shewanella sediminis HAW-EB3 Ssed_2930 -188 3.7 TCGTCAATAAATGGTGACGA
-122 4.2 TTGTAAGCAAATTGTTACAC
Shewanella woodyi ATCC 51908 Swoo_1715 -186 3.8 TTGGCAATAATTCAATACGA
-121 4.6 GTGTAACTTTTTGGTTACAA
Position: -140
Score: 4.1
Sequence: TTGGCAATATTTATGTACAG
Locus tag: PSHAa2044
PSHAa2044 -140 4.1 TTGGCAATATTTATGTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdeA
Ortholog function: Methionine gamma-lyase (EC 4.4.1.11)
Shewanella oneidensis MR-1 SO_1812 -197 3.9 ATGTAACAACTTAGTTACAG
Shewanella putrefaciens CN-32 Sputcn32_1507 -210 4.1 ATGTAACAAGTTAATTACAC
Shewanella sp W3-18-1 Sputw3181_2594 -210 4.1 ATGTAACAAGTTAATTACAC
Shewanella sp ANA-3 Shewana3_2643 -208 3.9 ATGTAACAACTTAGTTACAG
Shewanella sp MR-4 Shewmr4_2477 -208 3.9 ATGTAACAACTTAGTTACAG
Shewanella sp MR-7 Shewmr7_2545 -208 3.9 ATGTAACAACTTAGTTACAG
Shewanella baltica OS155 Sbal_1622 -199 4.1 ATGTAACAAGTTAATTACAC
Shewanella denitrificans OS217 Sden_2521 -152 4.3 ATGTAACATAGTTTTTACAT
Shewanella frigidimarina NCIMB 400 Sfri_1369 -148 4.7 TTGTAAAATTGTTTTTACAT
Shewanella pealeana ATCC 700345 Spea_2664 -215 4 ACGTAACAATCACTTTACAA
Shewanella halifaxensis HAW-EB4 Shal_2751 -214 4.4 TTGTAACATTCAGTTTACAA
Shewanella piezotolerans WP3 swp_3243 -242 4.1 ACGTAACATATATTTTACAA
Position: -88
Score: 4.1
Sequence: ATGTCCAAATTTGTTTACAT
Locus tag: PSHAa2157
PSHAa2157 -88 4.1 ATGTCCAAATTTGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrR
Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis
Shewanella oneidensis MR-1 SO_1669 -190 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_1388 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp W3-18-1 Sputw3181_2713 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp ANA-3 Shewana3_2779 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-4 Shewmr4_2605 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-7 Shewmr7_2672 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella baltica OS155 Sbal_1486 -196 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella denitrificans OS217 Sden_2593 -155 4.6 CTGTAAACAAGACTTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_1330 -92 4.7 CTGTAAACTTCACTTGCCAC
Shewanella amazonensis SB2B Sama_2220 -134 4.6 CTGTAAACAAGACTTGCCAC
Shewanella loihica PV-4 Shew_1437 -162 4.7 GTGTAAACAACTCTTGCCAC
Shewanella pealeana ATCC 700345 Spea_1450 -158 4.6 CTGTAAACAAGTCTTGCCAC
Shewanella halifaxensis HAW-EB4 Shal_1533 -159 4.1 CTGTAAACAAGCCTTGCCAC
Shewanella piezotolerans WP3 swp_1652 -309 4.6 cTGTAAAcaagtCTTgcCAC
Shewanella sediminis HAW-EB3 Ssed_2928 -151 4.6 CTGTAAACAAGACTTGCCAC
Shewanella woodyi ATCC 51908 Swoo_1717 -161 4.6 CTGTAAACAAGACTTGCCAC
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