Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Pseudoalteromonas haloplanktis TAC125

Reference regulog properties
Source regulog: LexA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas haloplanktis TAC125
Orthologous TF(s) PSHAa2873
Regulated genes 7
Built upon 192 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas haloplanktis TAC125
Locus tag Position Score Sequence
Position: -70
Score: 5.9
Sequence: TACTGTACATAAAAACAGTA
Locus tag: PSHAa0834
PSHAa0834 -70 5.9 TACTGTACATAAAAACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yebG
Ortholog function: SOS regulon DNA damage-inducible protein
Shewanella oneidensis MR-1 SO_2604 -31 6 TACTGTATATAAAAACAGTG
Shewanella putrefaciens CN-32 Sputcn32_2205 -30 6 TACTGTATATAAAAACAGTG
Shewanella sp W3-18-1 Sputw3181_1804 -30 6 TACTGTATATAAAAACAGTG
Shewanella sp ANA-3 Shewana3_1775 -31 6 TACTGTATATAAAAACAGTG
Shewanella sp MR-4 Shewmr4_1670 -31 6 TACTGTATATAAAAACAGTG
Shewanella sp MR-7 Shewmr7_1745 -31 6 TACTGTATATAAAAACAGTG
Shewanella baltica OS155 Sbal_2450 -31 6 TACTGTATATAAAAACAGTG
Shewanella denitrificans OS217 Sden_1719 -31 6 CACTGTATATAAAAACAGTA
Shewanella frigidimarina NCIMB 400 Sfri_2231 -31 5.9 CACTGTATATAAAAACAGTG
Shewanella amazonensis SB2B Sama_1582 -31 5.8 CACTGTATAAATAAACAGTG
Shewanella loihica PV-4 Shew_1799 -31 5.7 AACTGTATATAAAAACAGTG
Shewanella pealeana ATCC 700345 Spea_1932 -31 5.9 CACTGTATATAAAAACAGTG
Shewanella halifaxensis HAW-EB4 Shal_2367 -31 6 TACTGTATATAAAAACAGTG
Shewanella piezotolerans WP3 swp_2821 11 6 TACTGTATATAAAAACAGTG
Shewanella sediminis HAW-EB3 Ssed_2486 -31 5.9 AACTGTATATAAAAACAGTA
Shewanella woodyi ATCC 51908 Swoo_2130 -31 5.9 AACTGTATATAAAAACAGTA
Position: -43
Score: 5.5
Sequence: CACTGTATAAATTAACAGTT
Locus tag: PSHAa1218
PSHAa1218 -43 5.5 CACTGTATAAATTAACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella putrefaciens CN-32 Sputcn32_2771 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp W3-18-1 Sputw3181_1241 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp ANA-3 Shewana3_1104 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp MR-4 Shewmr4_1104 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp MR-7 Shewmr7_1170 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella baltica OS155 Sbal_3153 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella denitrificans OS217 Sden_1151 -71 5.4 TACTGTATAAAAAACCAGTG
-49 5.6 TACTGTTTATCAATACAGTG
Shewanella frigidimarina NCIMB 400 Sfri_1043 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella amazonensis SB2B Sama_1026 -73 5.4 TACTGTACAAAAAATCAGTA
-51 5.3 TACTGTGTATCAATACAGTA
Shewanella loihica PV-4 Shew_1196 -62 5.7 TACTGTATAAAAATTCAGTA
-40 4.9 TACTGTGCATGAATACAGTA
Shewanella pealeana ATCC 700345 Spea_1169 -62 5.9 TACTGTATGAATAAACAGTA
-40 5.3 TACTGTTTAACCATACAGTG
Shewanella halifaxensis HAW-EB4 Shal_1212 -62 5.8 TACTGTATAGATAAACAGTA
-40 5.5 TACTGTTTAACTATACAGTG
Shewanella piezotolerans WP3 swp_1346 -61 5.7 TACTGTATAGAAAAACAGTA
-39 5.6 TACTGTTTATCAATACAGTG
Shewanella sediminis HAW-EB3 Ssed_1281 -62 5.8 TACTGTATATAAAATCAGTA
-40 5.5 TACTGTTTAAAAACACAGTA
Shewanella woodyi ATCC 51908 Swoo_3359 -64 5.9 TACTGTATTTATGAACAGTA
-42 5.9 TACTGTTCATAAATACAGTA
Position: -116
Score: 5
Sequence: AACTGTATATACTCACAGTT
Position: -91
Score: 4.9
Sequence: TACTGTATGGAAAACCAGTT
Locus tag: PSHAa2873
PSHAa2873 -116 5 AACTGTATATACTCACAGTT
-91 4.9 TACTGTATGGAAAACCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Shewanella oneidensis MR-1 SO_4603 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella putrefaciens CN-32 Sputcn32_3780 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp W3-18-1 Sputw3181_0135 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp ANA-3 Shewana3_3989 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-4 Shewmr4_3789 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-7 Shewmr7_3862 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella baltica OS155 Sbal_0156 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella denitrificans OS217 Sden_3515 -45 5.1 TACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella frigidimarina NCIMB 400 Sfri_0260 -45 5 CACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella amazonensis SB2B Sama_3481 -45 5.6 TACTGTATATACTGACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella loihica PV-4 Shew_0127 -45 4.9 TACTGTATATACTGACAGGT
-26 4.8 TACTGTATGGAAAGACAGGA
Shewanella pealeana ATCC 700345 Spea_3997 -45 5.2 TACTGTATATACTAACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella halifaxensis HAW-EB4 Shal_0260 -45 4.9 TACTGTATATACTGACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella piezotolerans WP3 swp_4821 -45 5.2 TACTGTATATACTAACAGGT
-26 5 TACTGTATAGAAAAACAGGT
Shewanella sediminis HAW-EB3 Ssed_0200 -45 5.6 TACTGTATATACTAACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Shewanella woodyi ATCC 51908 Swoo_0180 -45 5.3 TACTGTATATACTGACAGTT
-26 5 TACTGTATAGAAAGACAGGA
© 2009-2020 RegPrecise