Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TyrR regulog to Shewanella denitrificans OS217

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella denitrificans OS217
Orthologous TF(s) Sden_2593
Regulated genes 22
Built upon 312 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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© 2009-2020 RegPrecise
Predicted regulatory interactions in Shewanella denitrificans OS217
Locus tag Position Score Sequence
Position: -229
Score: 4.1
Sequence: GAGTATCGAAAAGTTTACAC
Locus tag: Sden_0746
Sden_0746 -229 4.1 GAGTATCGAAAAGTTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: brnQ
Ortholog function: Branched-chain amino acid transport system carrier protein
Shewanella oneidensis MR-1 SO_0949 -121 5 GTGTAAACATAGGTTTGCAC
Shewanella putrefaciens CN-32 Sputcn32_0889 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp W3-18-1 Sputw3181_3284 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp ANA-3 Shewana3_3332 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-4 Shewmr4_0794 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-7 Shewmr7_3229 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella baltica OS155 Sbal_0842 -107 5.1 GTGTAAACAAAGATTTGCAC
Shewanella denitrificans OS217 Sden_0746 -229 4.1 GAGTATCGAAAAGTTTACAC
Shewanella frigidimarina NCIMB 400 Sfri_0662 -122 4.8 GTGTATTTTTAACTTTACAA
Shewanella amazonensis SB2B Sama_2740 -109 4.5 CTGTAATTCTGGCGTTACAC
Shewanella loihica PV-4 Shew_0769 -102 4.6 GTGTAATAAGAAGTTTACAC
Shewanella pealeana ATCC 700345 Spea_0804 -90 5.2 GTGTAAAGTAATAATTACAC
Shewanella halifaxensis HAW-EB4 Shal_0859 -94 5.1 GTGTAAACTAATCATTACAC
Shewanella piezotolerans WP3 swp_4229 -153 5 GTGTAAACCAAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_0892 -106 4.6 GTGTAATTGAAAGTTTACAC
Shewanella woodyi ATCC 51908 Swoo_0894 -67 5.1 GTGTAATCTAAAGTTTACAC
Position: -121
Score: 4.9
Sequence: TTGTAAATTTATTGTTACAC
Locus tag: Sden_1016
Sden_1016 -121 4.9 TTGTAAATTTATTGTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pep1
Ortholog function: Alkaline serine exoprotease A precursor (EC 3.4.21.-)
Shewanella baltica OS155 Sbal_3200 -136 4.8 TTGTAAATCAAGTGTTACAT
Shewanella denitrificans OS217 Sden_1016 -121 4.9 TTGTAAATTTATTGTTACAC
Shewanella woodyi ATCC 51908 Swoo_2373 -127 5 TTGTAAATATGATTTTACAC
Position: -224
Score: 3.8
Sequence: TTGGTTACATAAATTGCCAG
Locus tag: Sden_1089
Sden_1089 -224 3.8 TTGGTTACATAAATTGCCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pep3
Ortholog function: peptidase, M13 family
Shewanella oneidensis MR-1 SO_3844 -173 4.2 ATGGTAATTTTTAGTTACAA
Shewanella putrefaciens CN-32 Sputcn32_0791 -276 3.6 ATGTTAAGTTTATTTGCCTT
Shewanella sp W3-18-1 Sputw3181_3384 -276 3.6 ATGTTAAGTTTATTTGCCTT
Shewanella sp ANA-3 Shewana3_0759 -172 4.2 ATGGTAATTTTTAGTTACAA
Shewanella sp MR-4 Shewmr4_3179 -173 4.2 ATGGTAATTTTTAGTTACAA
Shewanella sp MR-7 Shewmr7_0787 -172 4.2 ATGGTAATTTTTAGTTACAA
Shewanella baltica OS155 Sbal_0685 -173 4 CTGGTAACCTTTAGTTACAT
Shewanella denitrificans OS217 Sden_1089 -224 3.8 TTGGTTACATAAATTGCCAG
Shewanella loihica PV-4 Shew_2973 -180 4.1 GAGGAAATCTTTACTTACAT
Shewanella pealeana ATCC 700345 Spea_3177 -237 3.8 TGGGAAACCTTTTCTTACAC
Shewanella halifaxensis HAW-EB4 Shal_3258 -202 3.9 TAGGAAACCTTTTCTTACAC
Shewanella piezotolerans WP3 swp_3866 -189 3.9 TAGGAAACCTTTTCTTACAC
Shewanella sediminis HAW-EB3 Ssed_3509 -218 4 AAGGAAACCTTTACTTACAC
Shewanella woodyi ATCC 51908 Swoo_0911 -178 3.7 AAGGAAACCTTTTCTTACAT
Position: -324
Score: 4
Sequence: TTGTAAGTTATTATTTACTG
Locus tag: Sden_1245
Sden_1245 -324 4 TTGTAAGTTATTATTTACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Shewanella oneidensis MR-1 SO_1483 -372 3.7 GTGTAATCATTGTTTTTCGA
Shewanella putrefaciens CN-32 Sputcn32_1238 -304 4.7 GTGTAATTATAAATTTACGT
Shewanella sp W3-18-1 Sputw3181_2866 -303 4.5 GTGTAATTATAAATTTACTT
Shewanella sp ANA-3 Shewana3_2943 -372 4.3 CTGTATATTTAAATTTTCAA
Shewanella sp MR-4 Shewmr4_2767 -372 4.3 CTGTATAGTTAAATTTTCAA
Shewanella sp MR-7 Shewmr7_2845 -372 3.8 CTGTACATTTAAATTTTCAG
Shewanella baltica OS155 Sbal_1316 -380 3.6 CTGTATTAATATATTTACTG
Shewanella denitrificans OS217 Sden_1245 -324 4 TTGTAAGTTATTATTTACTG
Shewanella frigidimarina NCIMB 400 Sfri_1101 -458 4.4 tgGTAAAGaaAtATTTACAg
Shewanella amazonensis SB2B Sama_2381 -450 4.1 TTGTAAATTAAATATTAAAT
-364 3.7 GTGTATTAAAAATCTTACAG
Shewanella loihica PV-4 Shew_1275 -393 3.4 CTGTATCGACAAAATTACTA
Shewanella pealeana ATCC 700345 Spea_1290 -415 3.9 GTGGCAATAATTGTTAACGA
Shewanella halifaxensis HAW-EB4 Shal_1352 -458 4.1 aTGTAAAagTAtATTgACgC
Shewanella piezotolerans WP3 swp_1433 -412 4.2 CTGTATTTATAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_1414 -371 4.2 CTGTAAGTTTATTTTTACGC
Shewanella woodyi ATCC 51908 Swoo_1528 -401 3.9 GTGTATCATTAAGTTTACTT
-341 3.6 TTGGTAAATTTGTCTGACAA
Position: -181
Score: 4.2
Sequence: TTGTATACAAAATATGACAA
Locus tag: Sden_1376
Sden_1376 -181 4.2 TTGTATACAAAATATGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ipdC
Ortholog function: Indole-3-pyruvate decarboxylase (EC 4.1.1.74)
Shewanella denitrificans OS217 Sden_1376 -181 4.2 TTGTATACAAAATATGACAA
Shewanella amazonensis SB2B Sama_1025 -203 3.9 ACGTAAGCCAGGCTTTCCAA
-138 3.8 GTGTCACGCCCGGATGACAG
Shewanella loihica PV-4 Shew_3635 -134 4.1 CTGTAACGATATCTTGTCAC
Shewanella sediminis HAW-EB3 Ssed_0171 -211 4.4 GTGTAAAGCCGGGTCTACAC
-137 4.2 ATGTAAAGTTAACTGTACGT
Position: -105
Score: 4.1
Sequence: GCGTATATAAATGGTTACAT
Locus tag: Sden_1409
Sden_1409 -105 4.1 GCGTATATAAATGGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aprE
Ortholog function: Alkaline serine protease
Shewanella sp ANA-3 Shewana3_1443 -357 3.9 TTTGAAATTATTCATTCCAA
Shewanella sp MR-4 Shewmr4_1390 -357 3.9 TTTGAAATTAATCATTCCAA
Shewanella sp MR-7 Shewmr7_1455 -357 3.9 TTTGAAATTAATCATTCCAA
Shewanella denitrificans OS217 Sden_1409 -105 4.1 GCGTATATAAATGGTTACAT
Shewanella frigidimarina NCIMB 400 Sfri_2692 -333 4.7 CTGCAAAAATATCTTTACAC
Shewanella piezotolerans WP3 swp_3159 -171 4 ACGTAAAGAAATCTGTCCAC
Position: -269
Score: 4.5
Sequence: TTGTCAGCTTATCTTTCCAA
Locus tag: Sden_1750
Sden_1750 -269 4.5 TTGTCAGCTTATCTTTCCAA
Supported by regulated orthologs from reference regulons