Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of MalR regulog to Shewanella denitrificans OS217

Reference regulog properties
Source regulog: MalR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Maltodextrin utilization
Effector: Maltose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella denitrificans OS217
Orthologous TF(s) Sden_1820
Regulated genes 5
Built upon 67 sites [see more]
Predicted regulatory interactions in Shewanella denitrificans OS217
Locus tag Position Score Sequence
Position: -112
Score: 6
Sequence: TATGCATACGTATTCATA
Locus tag: Sden_1800
Sden_1800 -112 6 TATGCATACGTATTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amyA
Ortholog function: Cytoplasmic alpha-amylase (EC 3.2.1.1)
Shewanella denitrificans OS217 Sden_1800 -112 6 TATGCATACGTATTCATA
Position: -100
Score: 5.7
Sequence: CCTGAATACGTATGTAGT
Locus tag: Sden_2002
Sden_2002 -100 5.7 CCTGAATACGTATGTAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: susB
Ortholog function: Alpha-glucosidase (EC 3.2.1.20)
Shewanella oneidensis MR-1 SO_2450 -90 5.4 GTGGAATACGTATGCAAG
Shewanella sp ANA-3 Shewana3_1931 -90 6 GGTGAATACGTATGCAAA
Shewanella sp MR-4 Shewmr4_1876 -90 6 GGTGAATACGTATGCAAA
Shewanella sp MR-7 Shewmr7_2102 -90 6 GGTGAATACGTATGCAAA
Shewanella baltica OS155 Sbal_2329 -90 5.9 GGTGAATACGTATGCAGG
Shewanella denitrificans OS217 Sden_2002 -100 5.7 CCTGAATACGTATGTAGT
Shewanella frigidimarina NCIMB 400 Sfri_1777 -92 6.1 ACTGAATACGTATGCAAA
Shewanella amazonensis SB2B Sama_1108 -89 6 GCTGAATACGTATGCAGC
Shewanella loihica PV-4 Shew_1876 -164 5.9 GGTGAATACGTATGCAGC
Shewanella piezotolerans WP3 swp_2676 -111 6.1 TTTGAATACGTATGCAAG
Position: -294
Score: 5.6
Sequence: GATGAATACGTATGTAGT
Locus tag: Sden_2003
Sden_2003 -294 5.6 GATGAATACGTATGTAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: Predicted maltose transporter MalT
Shewanella oneidensis MR-1 SO_2458 -393 5.6 gaTGaATACGTATGtAAg
Shewanella sp ANA-3 Shewana3_1925 -377 5.6 GATGAATACGTATGTAAG
Shewanella baltica OS155 Sbal_2347 -518 5.6 gaTGaATACGTATGtAAg
Shewanella denitrificans OS217 Sden_2003 -294 5.6 GATGAATACGTATGTAGT
Shewanella frigidimarina NCIMB 400 Sfri_1776 -353 5.6 CATGAATACGTATGTAGT
Shewanella amazonensis SB2B Sama_1657 -268 5.6 GATGAATACGTATGTAAG
Shewanella piezotolerans WP3 swp_2681 -469 5.5 caTGaATACGTATGtAtt
Shewanella woodyi ATCC 51908 Swoo_2202 -282 5.9 CATGAATACGTATGCAAG
Position: -292
Score: 6.1
Sequence: TATGCATACGTATTCAAT
Position: -143
Score: 6.2
Sequence: TTTGCATACGTATGCAGT
Locus tag: Sden_2028
Sden_2028 -292 6.1 TATGCATACGTATTCAAT
-143 6.2 TTTGCATACGTATGCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malZ
Ortholog function: Maltodextrin glucosidase (EC 3.2.1.20)
Shewanella sp ANA-3 Shewana3_2311 -312 6.1 TGTGCATACGTATTCAAT
-163 6.2 TTTGCATACGTATGCAGG
Shewanella sp MR-4 Shewmr4_2133 -312 6.1 TGTGCATACGTATTCAAT
-163 6.2 TTTGCATACGTATGCAGG
Shewanella sp MR-7 Shewmr7_2209 -312 6.1 TGTGCATACGTATTCAAT
-163 6.2 TTTGCATACGTATGCAGG
Shewanella baltica OS155 Sbal_2287 -312 6 AGTGCATACGTATTCAAT
-163 6.2 TCTGCATACGTATGCAGG
Shewanella denitrificans OS217 Sden_2028 -292 6.1 TATGCATACGTATTCAAT
-143 6.2 TTTGCATACGTATGCAGT
Shewanella frigidimarina NCIMB 400 Sfri_1788 -296 6 TATGCATACGTATTCAAC
-147 6.2 TTTGCATACGTATGCAGG
Shewanella amazonensis SB2B Sama_1662 -317 6.1 AGTGCATACGTATTCAAA
-167 6.1 TGTGCATACGTATGCAGC
Shewanella loihica PV-4 Shew_1889 -311 6.1 TATGCATACGTATTCAAA
-160 6.2 TTTGCATACGTATGCAGT
Shewanella piezotolerans WP3 swp_2670 -303 6.1 TATGCATACGTATTCAAT
-154 5.9 ATTACATACGTATGCAGA
Shewanella woodyi ATCC 51908 Swoo_2210 -198 6.1 TATGCATACGTATTCAAA
-47 6.2 TATGCATACGTATGCAGA
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