Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Shewanella denitrificans OS217

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella denitrificans OS217
Orthologous TF(s) Sden_0825
Regulated genes 19
Built upon 502 sites [see more]
Predicted regulatory interactions in Shewanella denitrificans OS217
Locus tag Position Score Sequence
Position: -324
Score: 3.7
Sequence: TCTGATTAAAATGTCAGC
Position: -215
Score: 4.3
Sequence: TGTGCTTTTATATTCGAT
Position: -204
Score: 3.7
Sequence: ATTCGATTAAAAAGCAAA
Position: -146
Score: 3.7
Sequence: ATCAAATTGTTATGCAAT
Position: -125
Score: 4.3
Sequence: TGTGAATACATATTTATT
Position: -121
Score: 4
Sequence: AATACATATTTATTAATT
Position: -111
Score: 3.9
Sequence: TATTAATTTATTTTCAGG
Position: -1
Score: 4.5
Sequence: TATGAGTAATCATGCAGT
Locus tag: Sden_0249
Sden_0249 -324 3.7 TCTGATTAAAATGTCAGC
-215 4.3 TGTGCTTTTATATTCGAT
-204 3.7 ATTCGATTAAAAAGCAAA
-146 3.7 ATCAAATTGTTATGCAAT
-125 4.3 TGTGAATACATATTTATT
-121 4 AATACATATTTATTAATT
-111 3.9 TATTAATTTATTTTCAGG
-1 4.5 TATGAGTAATCATGCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16)
Shewanella amazonensis SB2B Sama_0255 -50 3.7 ACTCTTTAATTATGCAAT
Shewanella loihica PV-4 Shew_0201 -53 4.2 TATGCAATAATATTGAAT
Shewanella pealeana ATCC 700345 Spea_0226 -27 3.8 TTTGAATATATATTTGGG
Shewanella halifaxensis HAW-EB4 Shal_4094 -122 3.8 ATTGAACATATATACTCT
-26 4.5 TTTGAATATATATTTAGG
Shewanella piezotolerans WP3 swp_2054 -143 3.4 AATACTTAATAATTGAAC
-27 4.5 TTTGAATATATATTTAGG
Shewanella sediminis HAW-EB3 Ssed_4277 -48 3.5 ACAAACTAATTATGCAAT
-27 4 TTTGAATATATATTTTAC
Shewanella woodyi ATCC 51908 Swoo_0328 -28 4 TTTGAATATATATTTTAC
Position: -249
Score: 3.9
Sequence: CCTGAAAATAAATTAATA
Position: -239
Score: 4
Sequence: AATTAATAAATATGTATT
Position: -235
Score: 4.3
Sequence: AATAAATATGTATTCACA
Position: -214
Score: 3.7
Sequence: ATTGCATAACAATTTGAT
Position: -156
Score: 3.7
Sequence: TTTGCTTTTTAATCGAAT
Position: -145
Score: 4.3
Sequence: ATCGAATATAAAAGCACA
Position: -36
Score: 3.7
Sequence: GCTGACATTTTAATCAGA
Locus tag: Sden_0250
Sden_0250 -249 3.9 CCTGAAAATAAATTAATA
-239 4 AATTAATAAATATGTATT
-235 4.3 AATAAATATGTATTCACA
-214 3.7 ATTGCATAACAATTTGAT
-156 3.7 TTTGCTTTTTAATCGAAT
-145 4.3 ATCGAATATAAAAGCACA
-36 3.7 GCTGACATTTTAATCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Shewanella oneidensis MR-1 SO_0275 -327 3.6 ATTGAAATATTAAGTAGT
-249 4 TAAAAATATATATTCACA
-127 3.7 AGTGAATAAAATAACAAG
Shewanella putrefaciens CN-32 Sputcn32_3717 -192 4.2 TATGAAAATAAATTAAAA
-57 3.8 AGTGAATAAAATAACAAC
Shewanella sp W3-18-1 Sputw3181_3860 -193 4.2 TATGAAAATAAATTAAAA
-180 4 TAAAAATATATATTCACA
-57 4 AGTGAATAAAATAACAAT
Shewanella sp ANA-3 Shewana3_3905 -357 3.7 ACTGATTTTTCAGTCTTT
-327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-4 Shewmr4_3709 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-7 Shewmr7_0236 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella baltica OS155 Sbal_4124 -471 4.2 ATTCAATATAAATGCGAA
-252 4 TAAAAATATATATTCACA
-130 3.8 AGTGAATAAAATAACAAC
Shewanella denitrificans OS217 Sden_0250 -235 4.3 AATAAATATGTATTCACA
-214 3.7 ATTGCATAACAATTTGAT
-145 4.3 ATCGAATATAAAAGCACA
Shewanella amazonensis SB2B Sama_0256 -241 3.7 AATAGATATTCATGCATA
Shewanella loihica PV-4 Shew_0202 -249 3.7 TAAAAATATCTATTCAAT
-228 3.5 ATTGCATAATTAGTTTGT
Shewanella pealeana ATCC 700345 Spea_0227 -266 3.8 CCCAAATATATATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_4093 -267 4.5 CCTAAATATATATTCAAA
Shewanella piezotolerans WP3 swp_2055 -266 4.5 CCTAAATATATATTCAAA
Shewanella sediminis HAW-EB3 Ssed_4276 -256 4 GTAAAATATATATTCAAA
-235 3.5 ATTGCATAATTAGTTTGT
Shewanella woodyi ATCC 51908 Swoo_0329 -423 3.5 TTTGCATTCAAAACCAAG
-263 4 GTAAAATATATATTCAAA
Position: -144
Score: 5.4
Sequence: ACTGCATTAAAATGCAAT
Locus tag: Sden_0329
Sden_0329 -144 5.4 ACTGCATTAAAATGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argA
Ortholog function: N-acetylglutamate synthase (EC 2.3.1.1)
Shewanella oneidensis MR-1 SO_4245 -141 4.3 TTTGAAAATATAAGCACT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella putrefaciens CN-32 Sputcn32_0465 -117 3.9 AGTGAGAATAAATTCTTT
-96 5.5 TGTGAATTAAAATGCAAT
Shewanella sp W3-18-1 Sputw3181_0368 -117 3.9 AGTGAGAATAAATTCTTT
-96 5.5 TGTGAATTAAAATGCAAT
Shewanella sp ANA-3 Shewana3_3767 -141 4.3 TTTGAAAATATAAGCACT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella sp MR-4 Shewmr4_3594 -141 4.3 TTTGAAAATATAAGCACT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella sp MR-7 Shewmr7_0362 -100 3.8 AATGAGAATAAATTCTTT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella baltica OS155 Sbal_0380 -118 3.8 AATGAGAATAAATTCTTT
-97 5.5 TGTGAATTAAAATGCAAT
Shewanella denitrificans OS217 Sden_0329 -212 4.3 TCTGTAATAAAATGCACT
-144 5.4 ACTGCATTAAAATGCAAT
-123 4 ATTGCGTTTTTATTGATG
Shewanella frigidimarina NCIMB 400 Sfri_3825 -130 4.2 AGTGAAATAAAATGCTTT
-109 5.6 AGTGAATTAAAATGCAAT
Shewanella amazonensis SB2B Sama_0330 -86 5.7 TGTGAATTTAAATTCACT
Shewanella loihica PV-4 Shew_3478 -80 5.5 TGTGAATTTAAATGCAAT
Shewanella pealeana ATCC 700345 Spea_3834 -120 4.3 AGTGAAAATAAATGCTTT
-99 5.6 AATGAATTTAAATGCAAT
-34 4.4 GGTGAATATCTATTTATT
Shewanella halifaxensis HAW-EB4 Shal_0432 -100 5.6 AATGAATTTAAATGCACT
Shewanella piezotolerans WP3 swp_2207 -110 3.7 AGTGATAATAAATGCTTT
-89 5.4 ATTGCATTAAAATGCAAT
Shewanella sediminis HAW-EB3 Ssed_0388 -199 4.9 ACTCAATAAAAATTCACA
-88 5.3 TTTGCATTAAAATGCAAT
Shewanella woodyi ATCC 51908 Swoo_4558 -198 4.9 TGTGAAAAAATATTCAGT
-84 5.6 AGTGAATTAAAATGCAAT
Position: -89
Score: 5.7
Sequence: AGTGAATTTTTATTCACT
Locus tag: Sden_0825
Sden_0825 -89 5.7 AGTGAATTTTTATTCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: Arginine metabolism transcriptional regulator ArgR
Shewanella oneidensis MR-1 SO_0769 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella putrefaciens CN-32 Sputcn32_3220 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp W3-18-1 Sputw3181_0721 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp ANA-3 Shewana3_3510 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-4 Shewmr4_3340 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-7 Shewmr7_0613 -93 5.2 ACTGCATTTTTATTCATC
Shewanella baltica OS155 Sbal_0608 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella denitrificans OS217 Sden_0825 -89 5.7 AGTGAATTTTTATTCACT
Shewanella frigidimarina NCIMB 400 Sfri_0640 -104 5.6 AATGAATTTTTATTCAAT
Shewanella amazonensis SB2B Sama_0671 -98 5.3 TCTGCATTTTTATTCACA
Shewanella loihica PV-4 Shew_0866 -95 5.1 CCTGAATTTTTATTCACA
Shewanella pealeana ATCC 700345 Spea_0849 -95 5.5 AATGAATTTTTATTCAGA
Shewanella halifaxensis HAW-EB4 Shal_0902 -95 5.5 AATGAATTTTTATTCACA
Shewanella piezotolerans WP3 swp_4101 -95 5.3 CATGAATTTTTATTCAAT
Shewanella sediminis HAW-EB3 Ssed_0951 -95 5.2 GTTGCATTTTTATTCATA
Shewanella woodyi ATCC 51908 Swoo_1001 -95 5 ATTGCATTCTTATTCATT
Position: -98
Score: 4.1
Sequence: ACTCTATTTTTATGCAGC
Locus tag: Sden_1037
Sden_1037 -98 4.1 ACTCTATTTTTATGCAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: argW
Ortholog function: Predicted arginine uptake transporter, COG3314 family
Shewanella oneidensis MR-1 SO_1245 -99 4.8 GTTGAATGAAAATGCAGC
Shewanella putrefaciens CN-32 Sputcn32_2808 -124 4.9 GTTGAATGAAAATGCACC
Shewanella sp W3-18-1 Sputw3181_1204 -124 4.9 GTTGAATGAAAATGCACC
Shewanella sp ANA-3 Shewana3_1062 -99 4.9 GTTGAATGAAAATGCACC
Shewanella sp MR-4 Shewmr4_1058 -98 4.8 GTTGAATGAAAATGCATC
Shewanella sp MR-7 Shewmr7_1129 -98 4.8 GTTGAATGAAAATGCATC
Shewanella baltica OS155 Sbal_3205 -99 5.2 GTTGAATTTAAATGCACC
Shewanella denitrificans OS217 Sden_1037 -98 4.1 ACTCTATTTTTATGCAGC
Shewanella frigidimarina NCIMB 400 Sfri_1012 -88 4.8 ACTGAATGGACATTCAAT
Shewanella amazonensis SB2B Sama_0994 -102 4.2 CCTGCATGGACATGCACT
Shewanella loihica PV-4 Shew_2790 -90 4.5 CATGAATGGATATTCAGA
Shewanella pealeana ATCC 700345 Spea_3024 -93 4.9 GTTGAATGGATATTCAAT
Shewanella halifaxensis HAW-EB4 Shal_3114 -91 4.9 GTTGAATGGATATTCAAT
Shewanella piezotolerans WP3 swp_1256 -90 5.2 GTTGAATGAATATTCAAT
Shewanella sediminis HAW-EB3 Ssed_3353 -58 4.8 TTTGAATGGATATTCATA
Shewanella woodyi ATCC 51908 Swoo_3520 -89 4.6 CATGAATGGATATTCAGT
Position: -235
Score: 4.4
Sequence: ATTGAATTTAAAAGAATT
Position: -37
Score: 4.8
Sequence: CGTGCATGATTATTCAAT
Locus tag: Sden_1095
Sden_1095 -235 4.4 ATTGAATTTAAAAGAATT
-37 4.8 CGTGCATGATTATTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pbpG
Ortholog function: D-alanyl-D-alanine endopeptidase
Shewanella sp ANA-3 Shewana3_3292 -209 4.2 ATTGAATTTTTATTGGTA
-165 5.3 AGTGAATGAAAATTCAGA
Shewanella sp MR-4 Shewmr4_0828 -189 4.5 ACTGCTTAGTTATTCATT
-153 3.6 TGTTATTTTGCATTCATT
Shewanella sp MR-7 Shewmr7_3195 -189 4.3 GCTGCTTAGTTATTCATT
Shewanella denitrificans OS217 Sden_1095 -235 4.4 ATTGAATTTAAAAGAATT
-121 4 AAGTCATAATAATTCACT
-37 4.8 CGTGCATGATTATTCAAT
Position: -70
Score: 3.9
Sequence: ACTGTATAAAAAACCAGT
Locus tag: Sden_1151
Sden_1151 -70 3.9 ACTGTATAAAAAACCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella putrefaciens CN-32 Sputcn32_2771 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp W3-18-1 Sputw3181_1241 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp ANA-3 Shewana3_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-4 Shewmr4_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-7 Shewmr7_1170 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella baltica OS155 Sbal_3153 -137 3.6 CATGCATAATCAGTTAAT
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella denitrificans OS217 Sden_1151 -95 3.7 ACTCAAAATTAACTCAGC
-70 3.9 ACTGTATAAAAAACCAGT
-48 3.7 ACTGTTTATCAATACAGT
Shewanella frigidimarina NCIMB 400 Sfri_1043 -112 3.6 GATGATAAAATAGTCAAC
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella amazonensis SB2B Sama_1026 -72 3.8 ACTGTACAAAAAATCAGT
-50 3.7 ACTGTGTATCAATACAGT
Shewanella loihica PV-4 Shew_1196 -61 5.1 ACTGTATAAAAATTCAGT
Shewanella sediminis HAW-EB3 Ssed_1281 -61 4.6 ACTGTATATAAAATCAGT
Position: -81
Score: 4.7
Sequence: TTTGAAAAATTATTCAAA
Position: -58
Score: 4.2
Sequence: CTTGAATGAATGTTCAAA
Locus tag: Sden_1230
Sden_1230 -81 4.7 TTTGAAAAATTATTCAAA
-58 4.2 CTTGAATGAATGTTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3392
Ortholog function: NADH-dependent flavin oxidoreductase, Oye family
Shewanella oneidensis MR-1 SO_3392 -84 4.6 ATTGAACAAACATTCAAA
-60 4.6 CTTGAATGATCATTCAAA
Shewanella putrefaciens CN-32 Sputcn32_2720 -84 4.5 TTTGAACAAACATTCAAA
-60 4.7 CTTGAATGTTCATTCAAA
-33 4 CTTGAATGCACATTCAAG
Shewanella sp W3-18-1 Sputw3181_1292 -84 4.5 TTTGAACAAACATTCAAA
-60 4.7 CTTGAATGTTCATTCAAA
-33 4 CTTGAATGCACATTCAAG
Shewanella sp ANA-3 Shewana3_1159 -84 4.5 TTTGAACAAACATTCAAA
-60 3.9 CTTGAATGATCGTTCAAA
-33 4 CTTGAATGCACATTCAAG
Shewanella sp MR-4 Shewmr4_1158 -84 4.5 TTTGAACAAACATTCAAA
-60 3.9 CTTGAATGATCGTTCAAA
Shewanella sp MR-7 Shewmr7_1229 -84 4.5 TTTGAACAAACATTCAAA
-60 3.9 CTTGAATGATCGTTCAAA
-33 4.2 CTTGAATGCATATTCAAG
Shewanella baltica OS155 Sbal_1249 -84 4.9 TTTGAATGAACATTCAAA
-33 4.2 CTTGAATGCATATTCAAG
Shewanella denitrificans OS217 Sden_1230 -81 4.7 TTTGAAAAATTATTCAAA
-58 4.2 CTTGAATGAATGTTCAAA
-31 4 CTTGAATGCACATTCAAG
Shewanella frigidimarina NCIMB 400 Sfri_1089 -61 4.4 CTTGAATGTGCATTCAAT
-33 4.2 CTTGAATGCATATTCAAG
Shewanella amazonensis SB2B Sama_2407 -85 4.5 TTTGAATGTATGTTCAAA
-61 4 CTTGAATGTATGTTCAAG
-34 3.7 TTTGAATGCCTGTTCAAA
Shewanella loihica PV-4 Shew_3098 -83 4.2 TTTGAATGAACGTTCAAA
Shewanella piezotolerans WP3 swp_0975 -83 4.5 TTTGAATGTTTGTTCAAA
-59 4.8 CTTGAATGATTATTCAAA
-32 4.4 CTTGAATGTTCATTCAAG
Shewanella sediminis HAW-EB3 Ssed_3644 -83 4.5 TTTGAATGTTTGTTCAAA
-59 3.9 CTTGAATGATCGTTCAAA
-32 4.4 CTTGAATGAACATTCAAG
Shewanella woodyi ATCC 51908 Swoo_4055 -83 4.5 TTTGAATGTTTGTTCAAA
-59 3.9 CTTGAATGATCGTTCAAA
-32 4.4 CTTGAATGAACATTCAAG
Position: -303
Score: 3.9
Sequence: TGTGCTTATAGAGTCAAT
Position: -201
Score: 4.7
Sequence: CTTGCATTTTTAATCACT
Locus tag: Sden_2329
Sden_2329 -303 3.9 TGTGCTTATAGAGTCAAT
-201 4.7 CTTGCATTTTTAATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astB
Ortholog function: Succinylarginine dihydrolase (EC 3.5.3.23)
Shewanella oneidensis MR-1 SO_2706 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
-40 4.1 TTTGAATAAATAATAACC
Shewanella putrefaciens CN-32 Sputcn32_2251 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp W3-18-1 Sputw3181_1757 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp ANA-3 Shewana3_1728 -227 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 4.1 TTTGAATAAATAATAACC
Shewanella sp MR-4 Shewmr4_1584 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella sp MR-7 Shewmr7_1659 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella baltica OS155 Sbal_2497 -226 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 3.6 TATGAACAAATAATAACT
Shewanella denitrificans OS217 Sden_2329 -201 4.7 CTTGCATTTTTAATCACT
Shewanella frigidimarina NCIMB 400 Sfri_2479 -186 5 AGTGCATTTTTAGTCATT
Shewanella amazonensis SB2B Sama_1321 -233 4.1 AGTCACTTTTTAATCAAT
-147 3.6 AAGCAATAGTTATGCAAA
Shewanella pealeana ATCC 700345 Spea_1534 -137 5 TGTGCATTTCAATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_1604 -169 4.1 ATTTCATTAATAGTCATC
-137 4.6 TGTGCATTTTGATGCAAA
Shewanella piezotolerans WP3 swp_1743 -167 4 ATTTCATTATTAGTCATC
-135 4.6 TGTGCATTTTGATGCAAA
Shewanella sediminis HAW-EB3 Ssed_2842 -354 4 ATTTCATTATTAGTCATC
-322 4.3 TGTGCATTTCGATGCAAA
Shewanella woodyi ATCC 51908 Swoo_1802 -236 4 ATTTCATTATTAGTCATC
-204 5 TGTGAATTTCAATGCAAA
Position: -266
Score: 4.9
Sequence: AATGAGTTTTTATGCAAA
Position: -163
Score: 4.3
Sequence: GCTGATTAATCATGCAAA
Locus tag: Sden_3031
Sden_3031 -266 4.9 AATGAGTTTTTATGCAAA
-163 4.3 GCTGATTAATCATGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: potF
Ortholog function: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Shewanella oneidensis MR-1 SO_1270 -226 4.2 TTTGCTTGTTAATGCAAG
Shewanella putrefaciens CN-32 Sputcn32_1094 -230 4.6 TATGATTGATAATGCAAT
Shewanella sp W3-18-1 Sputw3181_3070 -230 4.6 TATGATTGATAATGCAAT
Shewanella sp ANA-3 Shewana3_3097 -376 3.9 TTTGAAATCCCATTCAAT
-164 4.2 ACTGCTTGTTAATGCAAG
Shewanella sp MR-4 Shewmr4_2918 -427 4.4 AGTGCTTTTAAATTGAAA
-375 4.2 TGTGAAATCTCATTCAAT
-164 4.2 TGTGCTTGTTAATGCAAG
Shewanella sp MR-7 Shewmr7_3000 -427 4.4 AGTGCTTTTAAATTGAAA
-375 4.2 TGTGAAATCTCATTCAAT
-164 4.2 TGTGCTTGTTAATGCAAG
Shewanella baltica OS155 Sbal_1108 -225 4.7 TTTGAGTGTTAATGCAAT
Shewanella denitrificans OS217 Sden_3031 -266 4.9 AATGAGTTTTTATGCAAA
-163 4.3 GCTGATTAATCATGCAAA
Shewanella frigidimarina NCIMB 400 Sfri_3009 -249 3.9 ACTGAATGATTATTGCAA
-228 4 AGTGATTTTTTAACCAAT
Shewanella amazonensis SB2B Sama_2642 -239 4.1 ACTGATTTTTAAAGCAAG
-177 3.6 ACTGAGTGCATATTAAAA
Shewanella loihica PV-4 Shew_0973 -179 4.2 ATTAGATATAAATTCATA
Shewanella sediminis HAW-EB3 Ssed_1061 -257 3.9 TGTGACTGACGATTCAAT
Position: -300
Score: 4.4
Sequence: TATGGCTATTTATTCACT
Position: -188
Score: 4.8
Sequence: ATTCAATTTATATGCAGA
Locus tag: Sden_3193
Sden_3193 -300 4.4 TATGGCTATTTATTCACT
-188 4.8 ATTCAATTTATATGCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shewanella oneidensis MR-1 SO_0617 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella putrefaciens CN-32 Sputcn32_0645 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp W3-18-1 Sputw3181_3529 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp ANA-3 Shewana3_0610 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-4 Shewmr4_0611 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-7 Shewmr7_3419 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella baltica OS155 Sbal_0571 -247 3.9 TATGACTAATTATGCTGA
Shewanella denitrificans OS217 Sden_3193 -300 4.4 TATGGCTATTTATTCACT
-188 4.8 ATTCAATTTATATGCAGA
Shewanella frigidimarina NCIMB 400 Sfri_3299 -301 4.4 TATGTGTAATTATTCACT
-241 3.9 TATGACTATTTATGCTTC
-189 4 TATCAATCTTTATGCAGA
Shewanella amazonensis SB2B Sama_3011 -308 3.8 TATGTCTATTTATCCAAT
-247 4.2 TCTGACTAAATATGCCAT
Shewanella loihica PV-4 Shew_0578 -304 5 TGTGACTATATATTCATA
-244 4 TCTGACTATTTATGCTCA
Shewanella pealeana ATCC 700345 Spea_3516 -281 3.7 CGTGAATAACTAGTAATT
-242 4 TGTGACTATTTATGCTTA
Shewanella halifaxensis HAW-EB4 Shal_3610 -242 4 TATGACTATTTATGCTTA
Shewanella piezotolerans WP3 swp_0747 -244 4 TATGACTAAATATGCTTA
Shewanella sediminis HAW-EB3 Ssed_0809 -246 3.9 TATGACTAATTATGCTTA
Shewanella woodyi ATCC 51908 Swoo_0655 -245 4.2 TATGACTAAATATGCTCT
Position: -153
Score: 4.6
Sequence: AGTGATTATTAAGTCACA
Locus tag: Sden_3414
Sden_3414 -153 4.6 AGTGATTATTAAGTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvG
Ortholog function: Acetolactate synthase large subunit (EC 2.2.1.6)
Shewanella oneidensis MR-1 SO_4347 -216 4.2 CGTGATTATTAAATCACA
Shewanella putrefaciens CN-32 Sputcn32_3614 -214 4.2 CGTGATTATTAAATCACA
Shewanella sp W3-18-1 Sputw3181_3754 -214 4.2 CGTGATTATTAAATCACA
Shewanella sp ANA-3 Shewana3_0356 -201 4.5 AGTGATTATTAAATCACA
Shewanella sp MR-4 Shewmr4_0362 -201 4.5 AGTGATTATTAAATCACA
Shewanella sp MR-7 Shewmr7_3664 -219 4.5 AGTGATTATTAAATCACA
Shewanella denitrificans OS217 Sden_3414 -153 4.6 AGTGATTATTAAGTCACA
Shewanella frigidimarina NCIMB 400 Sfri_0422 -202 4.6 AGTGATTATTAAGTCACA
Shewanella amazonensis SB2B Sama_3281 -157 4.5 AGTGATTATTAAATCACA
Shewanella loihica PV-4 Shew_0289 -166 4.5 AGTGATTATTAAATCACA
Shewanella pealeana ATCC 700345 Spea_0345 -181 4.2 CGTGATTATTAAATCACA
Shewanella halifaxensis HAW-EB4 Shal_3944 -193 4.2 CGTGATTATTAAATCACA
Shewanella piezotolerans WP3 swp_0359 -189 4.2 CGTGATTATTAAATCACA
Shewanella woodyi ATCC 51908 Swoo_0442 -190 4.2 CGTGATTATTAAATCACA