Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Fnr regulog to Pseudoalteromonas tunicata D2

Reference regulog properties
Source regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas tunicata D2
Orthologous TF(s) PTD2_21742
Regulated genes 3
Built upon 541 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas tunicata D2
Locus tag Position Score Sequence
Position: -12
Score: 3.9
Sequence: TTGAGGTTGACCAT
Locus tag: PTD2_10759
PTD2_10759 -12 3.9 TTGAGGTTGACCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: Glutaredoxin-related protein
Shewanella amazonensis SB2B Sama_1919 -169 4.5 GTGATGTGAATCAT
Shewanella baltica OS155 Sbal_1783 -152 4.5 GTGATGTGAATCAT
Shewanella denitrificans OS217 Sden_1640 -133 4.5 GTGATGTGCATCAT
Shewanella frigidimarina NCIMB 400 Sfri_1748 -151 4.5 GTGATGTGAATCAT
Shewanella halifaxensis HAW-EB4 Shal_2335 -150 3.9 GTGAAGTGTATCAT
Shewanella loihica PV-4 Shew_1835 -160 4.5 GTGATGTGAATCAT
Shewanella oneidensis MR-1 SO2880 -153 4.5 GTGATGTGAATCAT
Shewanella pealeana ATCC 700345 Spea_1964 -150 3.9 GTGAAGTGTATCAT
Shewanella piezotolerans WP3 swp_2753 -149 3.9 GTGAAGTGTATCAT
Shewanella putrefaciens CN-32 Sputcn32_1688 -152 4.5 GTGATGTGAATCAT
Shewanella sp ANA-3 Shewana3_1640 -153 4.5 GTGATGTGAATCAT
Shewanella sp MR-4 Shewmr4_1573 -153 4.5 GTGATGTGAATCAT
Shewanella sp MR-7 Shewmr7_1648 -153 4.5 GTGATGTGAATCAT
Shewanella sp W3-18-1 Sputw3181_2337 -152 4.5 GTGATGTGAATCAT
Position: -141
Score: 4.5
Sequence: TTAATCTAAATCAA
Locus tag: PTD2_11539
PTD2_11539 -141 4.5 TTAATCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella amazonensis SB2B Sama_1371 -105 5.2 TTGATTTGGATCAA
Shewanella baltica OS155 Sbal_1490 -103 5.2 TTGATTTGGATCAA
Shewanella denitrificans OS217 Sden_2589 -153 4.5 GTGAATTAGATCAA
-103 5.3 TTGATCCAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -166 4.6 GTGATCCAAATCAA
-105 5.3 TTGATCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_2887 -107 4.4 TTGATTCAGGTCAA
Shewanella oneidensis MR-1 SO1673 -293 4.3 TTGATGTAAATGAA
-106 5.2 TTGATTTGGATCAA
Shewanella pealeana ATCC 700345 Spea_2787 -155 4.3 GTGATCTAGATCCT
-104 5.3 TTGATTTAGATCAA
Shewanella piezotolerans WP3 swp_3395 -107 5.6 TTGATCTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_1392 -103 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_1469 -154 3.8 GTGAGCTTGGTCAT
-104 5.6 TTGATCTGGATCAA
Shewanella sp ANA-3 Shewana3_2775 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-4 Shewmr4_2601 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-7 Shewmr7_2668 -103 5.2 TTGATTTGGATCAA
Shewanella sp W3-18-1 Sputw3181_2709 -103 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3207 -154 4.1 GTGAGTTCGATCAA
-104 5.2 TTGATTTGGATCAA
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