Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HexR regulog to Pseudoalteromonas tunicata D2

Reference regulog properties
Source regulog: HexR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas tunicata D2
Orthologous TF(s) No orthologous TFs found
Regulated genes 4
Built upon 316 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas tunicata D2
Locus tag Position Score Sequence
Position: -52
Score: 4.1
Sequence: TCGTCAAAAAATTACAT
Locus tag: PTD2_02976
PTD2_02976 -52 4.1 TCGTCAAAAAATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Shewanella oneidensis MR-1 SO_2791 -57 4.9 CTGTAACAAAATTACTA
Shewanella putrefaciens CN-32 Sputcn32_1568 -57 5.1 TTGTAACAAAATTACTA
Shewanella sp W3-18-1 Sputw3181_2531 -57 5.1 TTGTAACAAAATTACTA
Shewanella sp ANA-3 Shewana3_2573 -57 4.4 CCGTAACAAAATTACTA
Shewanella sp MR-4 Shewmr4_2411 -57 4.4 CCGTAACAAAATTACTA
Shewanella sp MR-7 Shewmr7_2481 -57 4.9 CTGTAACAAAATTACTA
Shewanella baltica OS155 Sbal_1694 -57 5.1 TTGTAACAAAATTACTA
Shewanella denitrificans OS217 Sden_2288 -150 4.2 ATGTAATCAAACTAGAG
Shewanella loihica PV-4 Shew_1610 -57 4.3 TGGTAACTTAGTTACTA
Shewanella piezotolerans WP3 swp_3037 -57 4.3 ATGTAATAAGCTTACTA