Propagation of ArgR regulog to Pseudoalteromonas tunicata D2
Source regulog: | ArgR - Shewanellaceae |
Regulator type: | Transcription factor |
Regulator family: | ArgR |
Regulation mode: | repressor (activator) |
Biological process: | Arginine degradation; Arginine biosynthesis |
Effector: | Arginine |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Pseudoalteromonas tunicata D2 |
Orthologous TF(s) | PTD2_08504, PTD2_02901 |
Regulated genes | 15 |
Locus tag | Position | Score | Sequence | |
---|---|---|---|---|
Position: -90
Score: 4.5 Sequence: CTTGAATTAGCATTCAAA
Locus tag: PTD2_02491
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PTD2_02491 | -90 | 4.5 | CTTGAATTAGCATTCAAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO3392 | ||||
Ortholog function: NADH-dependent flavin oxidoreductase, Oye family | ||||
Shewanella oneidensis MR-1 | SO_3392 | -84 | 4.6 | ATTGAACAAACATTCAAA |
-60 | 4.6 | CTTGAATGATCATTCAAA | ||
Shewanella putrefaciens CN-32 | Sputcn32_2720 | -84 | 4.5 | TTTGAACAAACATTCAAA |
-60 | 4.7 | CTTGAATGTTCATTCAAA | ||
-33 | 4 | CTTGAATGCACATTCAAG | ||
Shewanella sp W3-18-1 | Sputw3181_1292 | -84 | 4.5 | TTTGAACAAACATTCAAA |
-60 | 4.7 | CTTGAATGTTCATTCAAA | ||
-33 | 4 | CTTGAATGCACATTCAAG | ||
Shewanella sp ANA-3 | Shewana3_1159 | -84 | 4.5 | TTTGAACAAACATTCAAA |
-60 | 3.9 | CTTGAATGATCGTTCAAA | ||
-33 | 4 | CTTGAATGCACATTCAAG | ||
Shewanella sp MR-4 | Shewmr4_1158 | -84 | 4.5 | TTTGAACAAACATTCAAA |
-60 | 3.9 | CTTGAATGATCGTTCAAA | ||
Shewanella sp MR-7 | Shewmr7_1229 | -84 | 4.5 | TTTGAACAAACATTCAAA |
-60 | 3.9 | CTTGAATGATCGTTCAAA | ||
-33 | 4.2 | CTTGAATGCATATTCAAG | ||
Shewanella baltica OS155 | Sbal_1249 | -84 | 4.9 | TTTGAATGAACATTCAAA |
-33 | 4.2 | CTTGAATGCATATTCAAG | ||
Shewanella denitrificans OS217 | Sden_1230 | -81 | 4.7 | TTTGAAAAATTATTCAAA |
-58 | 4.2 | CTTGAATGAATGTTCAAA | ||
-31 | 4 | CTTGAATGCACATTCAAG | ||
Shewanella frigidimarina NCIMB 400 | Sfri_1089 | -61 | 4.4 | CTTGAATGTGCATTCAAT |
-33 | 4.2 | CTTGAATGCATATTCAAG | ||
Shewanella amazonensis SB2B | Sama_2407 | -85 | 4.5 | TTTGAATGTATGTTCAAA |
-61 | 4 | CTTGAATGTATGTTCAAG | ||
-34 | 3.7 | TTTGAATGCCTGTTCAAA | ||
Shewanella loihica PV-4 | Shew_3098 | -83 | 4.2 | TTTGAATGAACGTTCAAA |
Shewanella piezotolerans WP3 | swp_0975 | -83 | 4.5 | TTTGAATGTTTGTTCAAA |
-59 | 4.8 | CTTGAATGATTATTCAAA | ||
-32 | 4.4 | CTTGAATGTTCATTCAAG | ||
Shewanella sediminis HAW-EB3 | Ssed_3644 | -83 | 4.5 | TTTGAATGTTTGTTCAAA |
-59 | 3.9 | CTTGAATGATCGTTCAAA | ||
-32 | 4.4 | CTTGAATGAACATTCAAG | ||
Shewanella woodyi ATCC 51908 | Swoo_4055 | -83 | 4.5 | TTTGAATGTTTGTTCAAA |
-59 | 3.9 | CTTGAATGATCGTTCAAA | ||
-32 | 4.4 | CTTGAATGAACATTCAAG | ||
Position: 17
Score: 4.1 Sequence: AGTAAATAATTTTGCAAT
Locus tag: PTD2_10739
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PTD2_10739 | 17 | 4.1 | AGTAAATAATTTTGCAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: recN | ||||
Ortholog function: DNA repair protein RecN | ||||
Shewanella oneidensis MR-1 | SO_3462 | -71 | 4.6 | ACTGTATATAAAATCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella putrefaciens CN-32 | Sputcn32_2771 | -71 | 4.6 | ACTGTATATAAAATCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella sp W3-18-1 | Sputw3181_1241 | -71 | 4.6 | ACTGTATATAAAATCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella sp ANA-3 | Shewana3_1104 | -71 | 5.1 | ACTGTATATAAATTCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella sp MR-4 | Shewmr4_1104 | -71 | 5.1 | ACTGTATATAAATTCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella sp MR-7 | Shewmr7_1170 | -71 | 5.1 | ACTGTATATAAATTCAGT |
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella baltica OS155 | Sbal_3153 | -137 | 3.6 | CATGCATAATCAGTTAAT |
-71 | 4.6 | ACTGTATATAAAATCAGT | ||
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella denitrificans OS217 | Sden_1151 | -95 | 3.7 | ACTCAAAATTAACTCAGC |
-70 | 3.9 | ACTGTATAAAAAACCAGT | ||
-48 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella frigidimarina NCIMB 400 | Sfri_1043 | -112 | 3.6 | GATGATAAAATAGTCAAC |
-71 | 4.6 | ACTGTATATAAAATCAGT | ||
-49 | 3.7 | ACTGTTTATCAATACAGT | ||
Shewanella amazonensis SB2B | Sama_1026 | -72 | 3.8 | ACTGTACAAAAAATCAGT |
-50 | 3.7 | ACTGTGTATCAATACAGT | ||
Shewanella loihica PV-4 | Shew_1196 | -61 | 5.1 | ACTGTATAAAAATTCAGT |
Shewanella sediminis HAW-EB3 | Ssed_1281 | -61 | 4.6 | ACTGTATATAAAATCAGT |
Position: -325
Score: 5.4 Sequence: TGTGAATAAATATTCACA
Position: -138
Score: 4.7 Sequence: CATGAATATGTATTCAAA
Locus tag: PTD2_10749
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PTD2_10749 | -325 | 5.4 | TGTGAATAAATATTCACA | |
-138 | 4.7 | CATGAATATGTATTCAAA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: gltB | ||||
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | ||||
Shewanella oneidensis MR-1 | SO_1325 | -359 | 4.5 | AAAGAATAACAATTCACT |
-313 | 4.3 | TTTGCAATAAAAATCACT | ||
Shewanella putrefaciens CN-32 | Sputcn32_1136 | -358 | 4.7 | GAAGAATAAAAATTCACT |
-312 | 4.3 | TTTGCAATAAAAATCACT | ||
Shewanella sp W3-18-1 | Sputw3181_3028 | -358 | 4.8 | GGAGAATAAAAATTCACT |
-312 | 4.3 | TTTGCAATAAAAATCACT | ||
Shewanella sp ANA-3 | Shewana3_3050 | -360 | 4.5 | ATAGAATAACAATTCATT |
-339 | 4 | TATAAATTTTTATACATC | ||
-314 | 4.3 | TTTGCAATAAAAATCACT | ||
Shewanella sp MR-4 | Shewmr4_2872 | -359 | 4.5 | AAAGAATAACAATTCACT |
-313 | 4.3 | TTTGCAATAAAAATCACT | ||
Shewanella sp MR-7 | Shewmr7_2954 | -359 | 4.5 | AAAGAATAACAATTCACT |
-313 | 4.3 | TTTGCAATAAAAATCACT | ||
Shewanella baltica OS155 | Sbal_1178 | -361 | 5.3 | AATGAATAATAATTCAAC |
-315 | 4.3 | TTTGCAATAAAAATCACT | ||
Shewanella denitrificans OS217 | Sden_2790 | -359 | 5.1 | AGTGAATATTTAGTCAGT |
Shewanella frigidimarina NCIMB 400 | Sfri_2951 | -358 | 5 | AATGAATATTTAATCATT |
-312 | 4.3 | TTTAAAATAAAATTCACT | ||
Shewanella amazonensis SB2B | Sama_0857 | -362 | 4.6 | TTTGAATAGTTAATCAAT |
-316 | 4 | CCTGCAAAAAAAATCACT | ||
Shewanella loihica PV-4 | Shew_1032 | -324 | 3.8 | TTTGTTAAATAATTCACT |
-303 | 4.3 | TATGCAATAAAAATCACT | ||
Shewanella pealeana ATCC 700345 | Spea_1013 | -354 | 4.9 | AATGCATAAATAGTCACA |
-330 | 4.3 | AGTGATTATCATTTCACT | ||
-309 | 4.3 | TCTGCAAAAAAAATCACT | ||
Shewanella halifaxensis HAW-EB4 | Shal_1061 | -355 | 4.6 | TATGCATAAATAAGCAAA |
-331 | 3.8 | AGTGACTACCATTTCACT | ||
-310 | 4 | TCTGCAAGAAAAATCACT | ||
Shewanella piezotolerans WP3 | swp_3803 | -355 | 4.4 | TCTGCATAATTAGTCAAG |
-331 | 4.3 | AGTGACTATCATTTCACT | ||
-310 | 4.3 | TTTGCAATAAAAATCACT | ||
Shewanella sediminis HAW-EB3 | Ssed_1126 | -301 | 4.1 | CGTGCAAAAAAAATCACT |
-127 | 4.3 | ACTCAAATTTTATGCAAT | ||
-62 | 3.8 | GGTGAATATCTATACTAA | ||
Shewanella woodyi ATCC 51908 | Swoo_1221 | -349 | 4.7 | ACTGCATAAATAAGCAAA |
-314 | 3.9 | ATTCATTATATTTGCAAT | ||
Position: -156
Score: 4.8 Sequence: ATTGCATATTAATTTAAT
Locus tag: PTD2_13824
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PTD2_13824 | -156 | 4.8 | ATTGCATATTAATTTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: argC | ||||
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
Shewanella oneidensis MR-1 | SO_0275 | -327 | 3.6 | ATTGAAATATTAAGTAGT |
-249 | 4 | TAAAAATATATATTCACA | ||
-127 | 3.7 | AGTGAATAAAATAACAAG | ||
Shewanella putrefaciens CN-32 | Sputcn32_3717 | -192 | 4.2 | TATGAAAATAAATTAAAA |
-57 | 3.8 | AGTGAATAAAATAACAAC | ||
Shewanella sp W3-18-1 | Sputw3181_3860 | -193 | 4.2 | TATGAAAATAAATTAAAA |
-180 | 4 | TAAAAATATATATTCACA | ||
-57 | 4 | AGTGAATAAAATAACAAT | ||
Shewanella sp ANA-3 | Shewana3_3905 | -357 | 3.7 | ACTGATTTTTCAGTCTTT |
-327 | 4.4 | ACTGAGTTATTAAGCAGT | ||
-249 | 4 | TAAAAATATATATTCACA | ||
Shewanella sp MR-4 | Shewmr4_3709 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
-249 | 4 | TAAAAATATATATTCACA | ||
Shewanella sp MR-7 | Shewmr7_0236 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
-249 | 4 | TAAAAATATATATTCACA | ||
Shewanella baltica OS155 | Sbal_4124 | -471 | 4.2 | ATTCAATATAAATGCGAA |
-252 | 4 | TAAAAATATATATTCACA | ||
-130 | 3.8 | AGTGAATAAAATAACAAC | ||
Shewanella denitrificans OS217 | Sden_0250 | -235 | 4.3 | AATAAATATGTATTCACA |
-214 | 3.7 | ATTGCATAACAATTTGAT | ||
-145 | 4.3 | ATCGAATATAAAAGCACA | ||
Shewanella amazonensis SB2B | Sama_0256 | -241 | 3.7 | AATAGATATTCATGCATA |
Shewanella loihica PV-4 | Shew_0202 | -249 | 3.7 | TAAAAATATCTATTCAAT |
-228 | 3.5 | ATTGCATAATTAGTTTGT | ||
Shewanella pealeana ATCC 700345 | Spea_0227 | -266 | 3.8 | CCCAAATATATATTCAAA |
Shewanella halifaxensis HAW-EB4 | Shal_4093 | -267 | 4.5 | CCTAAATATATATTCAAA |
Shewanella piezotolerans WP3 | swp_2055 | -266 | 4.5 | CCTAAATATATATTCAAA |
Shewanella sediminis HAW-EB3 | Ssed_4276 | -256 | 4 | GTAAAATATATATTCAAA |
-235 | 3.5 | ATTGCATAATTAGTTTGT | ||
Shewanella woodyi ATCC 51908 | Swoo_0329 | -423 | 3.5 | TTTGCATTCAAAACCAAG |
-263 | 4 | GTAAAATATATATTCAAA | ||
Position: -47
Score: 4.8 Sequence: ATTAAATTAATATGCAAT
Locus tag: PTD2_13829
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PTD2_13829 | -47 | 4.8 | ATTAAATTAATATGCAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: argE | ||||
Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16) | ||||
Shewanella amazonensis SB2B | Sama_0255 | -50 | 3.7 | ACTCTTTAATTATGCAAT |
Shewanella loihica PV-4 | Shew_0201 | -53 | 4.2 | TATGCAATAATATTGAAT |
Shewanella pealeana ATCC 700345 | Spea_0226 | -27 | 3.8 | TTTGAATATATATTTGGG |
Shewanella halifaxensis HAW-EB4 | Shal_4094 | -122 | 3.8 | ATTGAACATATATACTCT |
-26 | 4.5 | TTTGAATATATATTTAGG | ||
Shewanella piezotolerans WP3 | swp_2054 | -143 | 3.4 | AATACTTAATAATTGAAC |
-27 | 4.5 | TTTGAATATATATTTAGG | ||
Shewanella sediminis HAW-EB3 | Ssed_4277 | -48 | 3.5 | ACAAACTAATTATGCAAT |
-27 | 4 | TTTGAATATATATTTTAC | ||
Shewanella woodyi ATCC 51908 | Swoo_0328 | -28 | 4 | TTTGAATATATATTTTAC |
Position: -126
Score: 5.1 Sequence: ACTGCATAAACATGCACT
Locus tag: PTD2_08504
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PTD2_08504 | -126 | 5.1 | ACTGCATAAACATGCACT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: argR | ||||
Ortholog function: Arginine metabolism transcriptional regulator ArgR | ||||
Shewanella oneidensis MR-1 | SO_0769 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
Shewanella putrefaciens CN-32 | Sputcn32_3220 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
Shewanella sp W3-18-1 | Sputw3181_0721 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
Shewanella sp ANA-3 | Shewana3_3510 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
Shewanella sp MR-4 | Shewmr4_3340 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
Shewanella sp MR-7 | Shewmr7_0613 | -93 | 5.2 | ACTGCATTTTTATTCATC |
Shewanella baltica OS155 | Sbal_0608 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
Shewanella denitrificans OS217 | Sden_0825 | -89 | 5.7 | AGTGAATTTTTATTCACT |
Shewanella frigidimarina NCIMB 400 | Sfri_0640 | -104 | 5.6 | AATGAATTTTTATTCAAT |
Shewanella amazonensis SB2B | Sama_0671 | -98 | 5.3 | TCTGCATTTTTATTCACA |
Shewanella loihica PV-4 | Shew_0866 | -95 | 5.1 | CCTGAATTTTTATTCACA |
Shewanella pealeana ATCC 700345 | Spea_0849 | -95 | 5.5 | AATGAATTTTTATTCAGA |
Shewanella halifaxensis HAW-EB4 | Shal_0902 | -95 | 5.5 | AATGAATTTTTATTCACA |
Shewanella piezotolerans WP3 | swp_4101 | -95 | 5.3 | CATGAATTTTTATTCAAT |
Shewanella sediminis HAW-EB3 | Ssed_0951 | -95 | 5.2 | GTTGCATTTTTATTCATA |
Shewanella woodyi ATCC 51908 | Swoo_1001 | -95 | 5 | ATTGCATTCTTATTCATT |
Position: -1
Score: 4.1 Sequence: CATGCATTATTATGAAGT
Locus tag: PTD2_17790
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PTD2_17790 | -1 | 4.1 | CATGCATTATTATGAAGT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: astB | ||||
Ortholog function: Succinylarginine dihydrolase (EC 3.5.3.23) | ||||
Shewanella oneidensis MR-1 | SO_2706 | -227 | 4 | AGTCACTTTTTAATCAAA |
-142 | 3.6 | AAGAAATAGTTATGCATT | ||
-40 | 4.1 | TTTGAATAAATAATAACC | ||
Shewanella putrefaciens CN-32 | Sputcn32_2251 | -225 | 4 | AGTCACTTTTTAATCAAA |
-131 | 4.2 | TATGCATTTATCGTCAAA | ||
Shewanella sp W3-18-1 | Sputw3181_1757 | -225 | 4 | AGTCACTTTTTAATCAAA |
-131 | 4.2 | TATGCATTTATCGTCAAA | ||
Shewanella sp ANA-3 | Shewana3_1728 | -227 | 4 | AGTCACTTTTTAATCAAA |
-132 | 3.6 | TATGCATTTATCGTGAAA | ||
-40 | 4.1 | TTTGAATAAATAATAACC | ||
Shewanella sp MR-4 | Shewmr4_1584 | -227 | 4 | AGTCACTTTTTAATCAAA |
-142 | 3.6 | AAGAAATAGTTATGCATT | ||
Shewanella sp MR-7 | Shewmr7_1659 | -227 | 4 | AGTCACTTTTTAATCAAA |
-142 | 3.6 | AAGAAATAGTTATGCATT | ||
Shewanella baltica OS155 | Sbal_2497 | -226 | 4 | AGTCACTTTTTAATCAAA |
-132 | 3.6 | TATGCATTTATCGTGAAA | ||
-40 | 3.6 | TATGAACAAATAATAACT | ||
Shewanella denitrificans OS217 | Sden_2329 | -201 | 4.7 | CTTGCATTTTTAATCACT |
Shewanella frigidimarina NCIMB 400 | Sfri_2479 | -186 | 5 | AGTGCATTTTTAGTCATT |
Shewanella amazonensis SB2B | Sama_1321 | -233 | 4.1 | AGTCACTTTTTAATCAAT |
-147 | 3.6 | AAGCAATAGTTATGCAAA | ||
Shewanella pealeana ATCC 700345 | Spea_1534 | -137 | 5 | TGTGCATTTCAATTCAAA |
Shewanella halifaxensis HAW-EB4 | Shal_1604 | -169 | 4.1 | ATTTCATTAATAGTCATC |
-137 | 4.6 | TGTGCATTTTGATGCAAA | ||
Shewanella piezotolerans WP3 | swp_1743 | -167 | 4 | ATTTCATTATTAGTCATC |
-135 | 4.6 | TGTGCATTTTGATGCAAA | ||
Shewanella sediminis HAW-EB3 | Ssed_2842 | -354 | 4 | ATTTCATTATTAGTCATC |
-322 | 4.3 | TGTGCATTTCGATGCAAA | ||
Shewanella woodyi ATCC 51908 | Swoo_1802 | -236 | 4 | ATTTCATTATTAGTCATC |
-204 | 5 | TGTGAATTTCAATGCAAA | ||
Position: -78
Score: 4.3 Sequence: AGTGAATATTTATTGTTT
Locus tag: PTD2_14632
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PTD2_14632 | -78 | 4.3 | AGTGAATATTTATTGTTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: oadG | ||||
Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) | ||||
Shewanella putrefaciens CN-32 | Sputcn32_1029 | -265 | 4.3 | TATCCTTATAAATTCACT |
-154 | 4.3 | TGTGAATATTTAGTCTTT | ||
-133 | 4 | TGTGATTTTATATGCTGC | ||
Shewanella sp W3-18-1 | Sputw3181_3136 | -265 | 4.3 | TATCCTTATAAATTCACT |
-154 | 4.3 | TGTGAATATTTAGTCTTT | ||
-133 | 4 | TGTGATTTTATATGCTGC | ||
Shewanella sp MR-7 | Shewmr7_3069 | -322 | 3.9 | ATTCAATTTAAAGGCCAT |
-176 | 3.7 | AACGAATGTTCATTTAAT | ||
Shewanella baltica OS155 | Sbal_1024 | -139 | 4.9 | TGTGATTTTTTATTCAAA |
Shewanella frigidimarina NCIMB 400 | Sfri_1065 | -182 | 3.8 | GTTGAATAATCGTTGAGT |
-165 | 4.6 | TTTGAATATTTATGCTTT | ||
Shewanella amazonensis SB2B | Sama_1051 | -352 | 4.1 | ACTGCATATACTTCCACT |
-307 | 3.6 | TCTGCCCATGAATGCAGT | ||
Shewanella loihica PV-4 | Shew_1219 | -377 | 4.3 | ATTGCATAATCTTGCATA |
-331 | 4 | ATTCAATTTTCAAGCAGA | ||
Shewanella pealeana ATCC 700345 | Spea_1198 | -73 | 4.2 | TGTGAATGAATAGTGAAT |
-62 | 4.1 | AGTGAATATTTATTTTTA | ||
Shewanella halifaxensis HAW-EB4 | Shal_1235 | -63 | 4.8 | GGTGAATATTTATTGAGT |
-43 | 4.1 | CATCCATGTTTATTCACA | ||
Shewanella piezotolerans WP3 | swp_1378 | -157 | 3.6 | TATCAACAGAAATGCATA |
-136 | 4.4 | TGTGAATAAATAGTGATT | ||
Shewanella sediminis HAW-EB3 | Ssed_1320 | -322 | 4.4 | ACTGCATAACTTTTCATT |
Shewanella woodyi ATCC 51908 | Swoo_3337 | -110 | 4.4 | AATGAATAAAAAGTTATT |