Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HypR regulog to Shewanella pealeana ATCC 700345

Reference regulog properties
Source regulog: HypR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella pealeana ATCC 700345
Orthologous TF(s) Spea_1701
Regulated genes 9
Built upon 96 sites [see more]
Predicted regulatory interactions in Shewanella pealeana ATCC 700345
Locus tag Position Score Sequence
Position: -52
Score: 4.9
Sequence: ATTTTATACAAT
Locus tag: Spea_1655
Spea_1655 -52 4.9 ATTTTATACAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hypD2
Ortholog function: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Shewanella pealeana ATCC 700345 Spea_1655 -52 5.1 ATTTTATACAAT
Shewanella piezotolerans WP3 swp_1907 -36 4.5 AATGTATGCAAA
Error

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

The page you are looking for does not exist.

© 2009-2020 RegPrecise