Propagation of LiuR regulog to Shewanella sp W3-18-1
| Source regulog: | LiuR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella sp W3-18-1 |
| Orthologous TF(s) | Sputw3181_2305 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -98
Score: 5.2 Sequence: ATTGACGTTAACGTTAAC
Locus tag: Sputw3181_1497
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| Sputw3181_1497 | -98 | 5.2 | ATTGACGTTAACGTTAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfB | ||||
| Ortholog function: electron transfer flavoprotein, beta subunit | ||||
| Shewanella oneidensis MR-1 | SO_3145 | -98 | 5.2 | ATTGACGTTAACGTTAAC |
| Shewanella putrefaciens CN-32 | Sputcn32_2511 | -98 | 5.5 | ATTGACGTTAACGTCAAC |
| Shewanella sp W3-18-1 | Sputw3181_1497 | -98 | 5.2 | ATTGACGTTAACGTTAAC |
| Shewanella sp ANA-3 | Shewana3_1405 | -98 | 5.7 | GTTGACGTTAACGTTAAC |
| Shewanella sp MR-4 | Shewmr4_1352 | -98 | 5.7 | GTTGACGTTAACGTTAAC |
| Shewanella sp MR-7 | Shewmr7_1417 | -98 | 5.7 | GTTGACGTTAACGTTAAC |
| Shewanella baltica OS155 | Sbal_2847 | -98 | 5.7 | GTTGACGTTAACGTTAAC |
| Shewanella denitrificans OS217 | Sden_2539 | -97 | 5.9 | GTTGACGTTAACGTCAAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2748 | -99 | 5.2 | ATTGACGTTAACGTTAAC |
| Shewanella amazonensis SB2B | Sama_1169 | -106 | 5.5 | GTTGACGTTTACGTTAAC |
| Shewanella loihica PV-4 | Shew_2584 | -100 | 5.9 | GTTGACGTTAACGTCAAC |
| Shewanella pealeana ATCC 700345 | Spea_2855 | -121 | 5.7 | GTTGACGTTAACGTTAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_2945 | -120 | 5.7 | GTTGACGTTAACGTTAAC |
| Shewanella piezotolerans WP3 | swp_3472 | -116 | 5.9 | GTTGACGTTAACGTCAAC |
| Shewanella sediminis HAW-EB3 | Ssed_1445 | -96 | 5.7 | GTTGACGTTAACGTTAAC |
| Shewanella woodyi ATCC 51908 | Swoo_3236 | -99 | 5.7 | GTTGACGTTAACGTTAAC |
|
Position: -172
Score: 6 Sequence: GCTTACGTTTACGTAAAG
Locus tag: Sputw3181_1771
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| Sputw3181_1771 | -172 | 6 | GCTTACGTTTACGTAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ldh | ||||
| Ortholog function: leucine dehydrogenase | ||||
| Shewanella oneidensis MR-1 | SO_2638 | -171 | 6 | CCTTACGTTTACGTAAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_2238 | -172 | 6 | GCTTACGTTTACGTAAAG |
| Shewanella sp W3-18-1 | Sputw3181_1771 | -172 | 6 | GCTTACGTTTACGTAAAG |
| Shewanella sp ANA-3 | Shewana3_1742 | -171 | 6 | CCTTACGTTTACGTAAAG |
| Shewanella sp MR-4 | Shewmr4_1598 | -171 | 6 | CCTTACGTTTACGTAAAG |
| Shewanella sp MR-7 | Shewmr7_1673 | -171 | 6 | CCTTACGTTTACGTAAAG |
| Shewanella baltica OS155 | Sbal_2483 | -151 | 6 | GCTTACGTTTACGTAAAG |
| Shewanella denitrificans OS217 | Sden_1823 | -157 | 6.4 | CTTTACGTTTACGTAAAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2265 | -195 | 6.4 | CTTTACGTTTACGTAAAG |
| Shewanella amazonensis SB2B | Sama_2067 | -164 | 6 | CTTTACGTTGACGTAAAG |
| Shewanella loihica PV-4 | Shew_1555 | -174 | 6.5 | CTTTACGTTAACGTAAAG |
| Shewanella pealeana ATCC 700345 | Spea_2543 | -174 | 6.5 | CTTTACGTTAACGTAAAG |
| Shewanella halifaxensis HAW-EB4 | Shal_1711 | -174 | 6.5 | CTTTACGTTAACGTAAAG |
| Shewanella piezotolerans WP3 | swp_1857 | -175 | 6.5 | CTTTACGTTAACGTAAAG |
| Shewanella sediminis HAW-EB3 | Ssed_1877 | -173 | 6.5 | CTTTACGTTAACGTAAAG |
| Shewanella woodyi ATCC 51908 | Swoo_2710 | -174 | 5.8 | ATTGACGTTAACGTAAAG |
|
Position: -90
Score: 6.2 Sequence: GTTTACGTTAACGTAATG
Locus tag: Sputw3181_2123
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| Sputw3181_2123 | -90 | 6.2 | GTTTACGTTAACGTAATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bkdA1 | ||||
| Ortholog function: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit | ||||
| Shewanella oneidensis MR-1 | SO_2339 | -90 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella putrefaciens CN-32 | Sputcn32_1885 | -90 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella sp W3-18-1 | Sputw3181_2123 | -90 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella sp ANA-3 | Shewana3_2131 | -90 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella sp MR-4 | Shewmr4_2028 | -90 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella sp MR-7 | Shewmr7_1947 | -90 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella baltica OS155 | Sbal_2222 | -90 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella denitrificans OS217 | Sden_1786 | -83 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella frigidimarina NCIMB 400 | Sfri_1935 | -86 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella amazonensis SB2B | Sama_1709 | -81 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella loihica PV-4 | Shew_1925 | -105 | 5.7 | GTTTACGTTAACGTAACT |
| Shewanella pealeana ATCC 700345 | Spea_2246 | -91 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella halifaxensis HAW-EB4 | Shal_2234 | -92 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella piezotolerans WP3 | swp_2606 | -92 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella sediminis HAW-EB3 | Ssed_2329 | -103 | 6.2 | GTTTACGTTAACGTAATG |
| Shewanella woodyi ATCC 51908 | Swoo_2278 | -101 | 6.2 | GTTTACGTTAACGTAATG |
|
Position: -59
Score: 6 Sequence: CTTTACCTTTACGTAAAC
Locus tag: Sputw3181_2305
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| Sputw3181_2305 | -59 | 6 | CTTTACCTTTACGTAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: liuR | ||||
| Ortholog function: branched chain amino acid metabolism regulator, MerR family | ||||
| Shewanella oneidensis MR-1 | SO_1898 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1720 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella sp W3-18-1 | Sputw3181_2305 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella sp ANA-3 | Shewana3_1673 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella sp MR-4 | Shewmr4_2321 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella sp MR-7 | Shewmr7_2393 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella baltica OS155 | Sbal_2827 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella denitrificans OS217 | Sden_2244 | -58 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2726 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella amazonensis SB2B | Sama_1363 | -65 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella loihica PV-4 | Shew_2569 | -63 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella pealeana ATCC 700345 | Spea_2796 | -63 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_2901 | -62 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella piezotolerans WP3 | swp_3441 | -28 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella sediminis HAW-EB3 | Ssed_1459 | -60 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella woodyi ATCC 51908 | Swoo_3222 | -61 | 6 | CTTTACCTTTACGTAAAC |
|
Position: -104
Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Sputw3181_2704
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| Sputw3181_2704 | -104 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ivdA | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase | ||||
| Shewanella oneidensis MR-1 | SO_1677 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1397 | -104 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella sp W3-18-1 | Sputw3181_2704 | -104 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella sp ANA-3 | Shewana3_2771 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella sp MR-4 | Shewmr4_2597 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella sp MR-7 | Shewmr7_2664 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella baltica OS155 | Sbal_1495 | -100 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella denitrificans OS217 | Sden_1943 | -97 | 6.2 | CTTTACGTTAGCGTAAAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1338 | -78 | 5.6 | CTTTACGTTCGCGTCAAC |
| Shewanella amazonensis SB2B | Sama_1375 | -110 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella loihica PV-4 | Shew_1667 | -105 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella pealeana ATCC 700345 | Spea_2783 | -168 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_2878 | -168 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella piezotolerans WP3 | swp_3387 | -206 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella sediminis HAW-EB3 | Ssed_1473 | -122 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella woodyi ATCC 51908 | Swoo_3202 | -110 | 5.9 | CTTTACGTTCGCGTAAAC |
|
Position: -121
Score: 6 Sequence: GTTTACGTTTGCGTAAAG
Locus tag: Sputw3181_2713
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| Sputw3181_2713 | -121 | 6 | GTTTACGTTTGCGTAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tyrR | ||||
| Ortholog function: aromatic amino acid biosynthesis/transport transciptional regulator | ||||
| Shewanella oneidensis MR-1 | SO_1669 | -122 | 6 | CTTTACGTTTGCGTAAAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1388 | -121 | 6 | GTTTACGTTTGCGTAAAG |
| Shewanella sp W3-18-1 | Sputw3181_2713 | -121 | 6 | GTTTACGTTTGCGTAAAG |
| Shewanella sp ANA-3 | Shewana3_2779 | -137 | 5.7 | TTTTACGTTTGCGTAAAC |
| Shewanella sp MR-4 | Shewmr4_2605 | -137 | 5.7 | TTTTACGTTTGCGTAAAC |
| Shewanella sp MR-7 | Shewmr7_2672 | -137 | 5.7 | TTTTACGTTTGCGTAAAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1330 | -140 | 5.1 | TGTTACGTTAACGTAACA |
|
Position: -187
Score: 5.9 Sequence: GTTGACGTTAACGTAATG
Locus tag: Sputw3181_3028
|
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| Sputw3181_3028 | -187 | 5.9 | GTTGACGTTAACGTAATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: glutamate synthase, large subunit | ||||
| Shewanella oneidensis MR-1 | SO_1325 | -188 | 5.9 | GTTGACGTTAACGTCAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1136 | -187 | 5.8 | GTTGACGTTAACGTAACG |
| Shewanella sp W3-18-1 | Sputw3181_3028 | -187 | 5.9 | GTTGACGTTAACGTAATG |
| Shewanella sp ANA-3 | Shewana3_3050 | -189 | 5.7 | GTTAACGTTAACGTCAAG |
| Shewanella sp MR-4 | Shewmr4_2872 | -188 | 5.7 | GTTAACGTTAACGTCAAG |
| Shewanella sp MR-7 | Shewmr7_2954 | -188 | 5.7 | GTTAACGTTAACGTCAAG |
| Shewanella baltica OS155 | Sbal_1178 | -189 | 6.2 | GTTGACGTTAACGTAAAG |
| Shewanella denitrificans OS217 | Sden_2790 | -188 | 6.2 | GCTTACGTTAACGTAAAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2951 | -186 | 6.2 | GTTTACGTTAACGTCAAG |
| Shewanella amazonensis SB2B | Sama_0857 | -191 | 5.8 | GTTGACGTTAACGTAACC |
| Shewanella loihica PV-4 | Shew_1032 | -178 | 5.8 | GTTGACGTTAACGTAAGG |
| Shewanella pealeana ATCC 700345 | Spea_1013 | -184 | 5.8 | GTTTACGTTAAGGTAAGC |
| Shewanella halifaxensis HAW-EB4 | Shal_1061 | -185 | 6.2 | GTTTACGTTAAGGTAAAC |
| Shewanella piezotolerans WP3 | swp_3803 | -185 | 6 | GTTTACGTAAAGGTAAAC |
| Shewanella sediminis HAW-EB3 | Ssed_1126 | -177 | 6 | GTTTACGTAAACGTCAAC |
| Shewanella woodyi ATCC 51908 | Swoo_1221 | -179 | 6.2 | GTTTACGTTAACGTAATG |