Propagation of ArgR regulog to Shewanella sp W3-18-1
| Source regulog: | ArgR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella sp W3-18-1 |
| Orthologous TF(s) | Sputw3181_0721 |
| Regulated genes | 33 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -112
Score: 5.3 Sequence: GATGCATTTAAATTCACA
Locus tag: Sputw3181_0037
|
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| Sputw3181_0037 | -112 | 5.3 | GATGCATTTAAATTCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4732 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO_4732 | -106 | 4.2 | TTTAAATTCACATTCAGT |
| Shewanella putrefaciens CN-32 | Sputcn32_3915 | -112 | 5.3 | GATGCATTTAAATTCACA |
| Shewanella sp W3-18-1 | Sputw3181_0037 | -112 | 5.3 | GATGCATTTAAATTCACA |
| Shewanella sp ANA-3 | Shewana3_4118 | -106 | 4.2 | TTTAAATTCACATTCAGT |
| Shewanella sp MR-4 | Shewmr4_3913 | -106 | 4.2 | TTTAAATTCACATTCAGT |
| Shewanella sp MR-7 | Shewmr7_4005 | -106 | 4.2 | TTTAAATTCACATTCAGT |
| Shewanella baltica OS155 | Sbal_0045 | -112 | 4.8 | AACGCATTTAAATTCACA |
|
Position: -332
Score: 5.3 Sequence: GATGAATTTATATGCATT
Locus tag: Sputw3181_0230
|
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| Sputw3181_0230 | -332 | 5.3 | GATGAATTTATATGCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mcp(Arg) | ||||
| Ortholog function: Methyl-accepting chemotaxis protein | ||||
| Shewanella oneidensis MR-1 | SO_4466 | -286 | 5.5 | TGTGAATATATATGCAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0380 | -332 | 5.3 | GATGAATTTATATGCATT |
| Shewanella sp W3-18-1 | Sputw3181_0230 | -332 | 5.3 | GATGAATTTATATGCATT |
| Shewanella sp ANA-3 | Shewana3_0264 | -289 | 5.1 | TTTGAATTTGTATTCAAT |
| Shewanella sp MR-7 | Shewmr7_3758 | -274 | 5.5 | TATGAATTTATATTCATT |
| -253 | 4.8 | TGTGATTTTCAATTCAAT | ||
| Shewanella baltica OS155 | Sbal_0274 | -332 | 5.2 | GATGAATTTATATGCATA |
| -311 | 4.5 | AATAAATTTCAATGCATT | ||
|
Position: -96
Score: 5.5 Sequence: TGTGAATTAAAATGCAAT
Locus tag: Sputw3181_0368
|
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| Sputw3181_0368 | -96 | 5.5 | TGTGAATTAAAATGCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argA | ||||
| Ortholog function: N-acetylglutamate synthase (EC 2.3.1.1) | ||||
| Shewanella oneidensis MR-1 | SO_4245 | -141 | 4.3 | TTTGAAAATATAAGCACT |
| -79 | 5.4 | GGTGAATTAAAATGCAAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0465 | -117 | 3.9 | AGTGAGAATAAATTCTTT |
| -96 | 5.5 | TGTGAATTAAAATGCAAT | ||
| Shewanella sp W3-18-1 | Sputw3181_0368 | -117 | 3.9 | AGTGAGAATAAATTCTTT |
| -96 | 5.5 | TGTGAATTAAAATGCAAT | ||
| Shewanella sp ANA-3 | Shewana3_3767 | -141 | 4.3 | TTTGAAAATATAAGCACT |
| -79 | 5.4 | GGTGAATTAAAATGCAAT | ||
| Shewanella sp MR-4 | Shewmr4_3594 | -141 | 4.3 | TTTGAAAATATAAGCACT |
| -79 | 5.4 | GGTGAATTAAAATGCAAT | ||
| Shewanella sp MR-7 | Shewmr7_0362 | -100 | 3.8 | AATGAGAATAAATTCTTT |
| -79 | 5.4 | GGTGAATTAAAATGCAAT | ||
| Shewanella baltica OS155 | Sbal_0380 | -118 | 3.8 | AATGAGAATAAATTCTTT |
| -97 | 5.5 | TGTGAATTAAAATGCAAT | ||
| Shewanella denitrificans OS217 | Sden_0329 | -212 | 4.3 | TCTGTAATAAAATGCACT |
| -144 | 5.4 | ACTGCATTAAAATGCAAT | ||
| -123 | 4 | ATTGCGTTTTTATTGATG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3825 | -130 | 4.2 | AGTGAAATAAAATGCTTT |
| -109 | 5.6 | AGTGAATTAAAATGCAAT | ||
| Shewanella amazonensis SB2B | Sama_0330 | -86 | 5.7 | TGTGAATTTAAATTCACT |
| Shewanella loihica PV-4 | Shew_3478 | -80 | 5.5 | TGTGAATTTAAATGCAAT |
| Shewanella pealeana ATCC 700345 | Spea_3834 | -120 | 4.3 | AGTGAAAATAAATGCTTT |
| -99 | 5.6 | AATGAATTTAAATGCAAT | ||
| -34 | 4.4 | GGTGAATATCTATTTATT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0432 | -100 | 5.6 | AATGAATTTAAATGCACT |
| Shewanella piezotolerans WP3 | swp_2207 | -110 | 3.7 | AGTGATAATAAATGCTTT |
| -89 | 5.4 | ATTGCATTAAAATGCAAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0388 | -199 | 4.9 | ACTCAATAAAAATTCACA |
| -88 | 5.3 | TTTGCATTAAAATGCAAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_4558 | -198 | 4.9 | TGTGAAAAAATATTCAGT |
| -84 | 5.6 | AGTGAATTAAAATGCAAT | ||
|
Position: -96
Score: 5.5 Sequence: AGTGAATTTTTATTCAAC
Locus tag: Sputw3181_0721
|
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| Sputw3181_0721 | -96 | 5.5 | AGTGAATTTTTATTCAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argR | ||||
| Ortholog function: Arginine metabolism transcriptional regulator ArgR | ||||
| Shewanella oneidensis MR-1 | SO_0769 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
| Shewanella putrefaciens CN-32 | Sputcn32_3220 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
| Shewanella sp W3-18-1 | Sputw3181_0721 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
| Shewanella sp ANA-3 | Shewana3_3510 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
| Shewanella sp MR-4 | Shewmr4_3340 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
| Shewanella sp MR-7 | Shewmr7_0613 | -93 | 5.2 | ACTGCATTTTTATTCATC |
| Shewanella baltica OS155 | Sbal_0608 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
| Shewanella denitrificans OS217 | Sden_0825 | -89 | 5.7 | AGTGAATTTTTATTCACT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0640 | -104 | 5.6 | AATGAATTTTTATTCAAT |
| Shewanella amazonensis SB2B | Sama_0671 | -98 | 5.3 | TCTGCATTTTTATTCACA |
| Shewanella loihica PV-4 | Shew_0866 | -95 | 5.1 | CCTGAATTTTTATTCACA |
| Shewanella pealeana ATCC 700345 | Spea_0849 | -95 | 5.5 | AATGAATTTTTATTCAGA |
| Shewanella halifaxensis HAW-EB4 | Shal_0902 | -95 | 5.5 | AATGAATTTTTATTCACA |
| Shewanella piezotolerans WP3 | swp_4101 | -95 | 5.3 | CATGAATTTTTATTCAAT |
| Shewanella sediminis HAW-EB3 | Ssed_0951 | -95 | 5.2 | GTTGCATTTTTATTCATA |
| Shewanella woodyi ATCC 51908 | Swoo_1001 | -95 | 5 | ATTGCATTCTTATTCATT |
|
Position: -106
Score: 5.1 Sequence: AATGAATTTATAGTCACA
Locus tag: Sputw3181_0918
|
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| Sputw3181_0918 | -106 | 5.1 | AATGAATTTATAGTCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artI | ||||
| Ortholog function: Arginine ABC transporter, substrate-binding protein | ||||
| Shewanella oneidensis MR-1 | SO_1044 | -97 | 5.1 | AATGAATTTTTAGTCACA |
| -76 | 4 | AAAGCATAATTATTGACA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3027 | -106 | 5.1 | AATGAATTTATAGTCACA |
| -85 | 4 | AAAGCATAATTATTGACA | ||
| Shewanella sp W3-18-1 | Sputw3181_0918 | -106 | 5.1 | AATGAATTTATAGTCACA |
| -85 | 4 | AAAGCATAATTATTGACA | ||
| Shewanella sp ANA-3 | Shewana3_0882 | -254 | 4.4 | AATGAATAAAAAATGATA |
| -97 | 4.8 | TATGCATTTTTAATCATT | ||
| -76 | 4 | AAAGCATAATTATTGAAA | ||
| Shewanella sp MR-4 | Shewmr4_3053 | -254 | 4.4 | AATGAATAAAAAATGATA |
| -97 | 5 | TATGAATTTTTAATCATT | ||
| -76 | 4 | AAAGCATAATTATTGACA | ||
| Shewanella sp MR-7 | Shewmr7_0919 | -97 | 5 | AATGAATTTTTAATCAAA |
| -76 | 4 | AAAGCATAATTATTGACA | ||
| Shewanella baltica OS155 | Sbal_3392 | -99 | 5 | AATGAATTTTTAATCAAA |
| -78 | 4 | ACAGCATAATTATTGACA | ||
| Shewanella loihica PV-4 | Shew_3166 | -103 | 4.6 | AATGACTAAATAGTCATT |
| -82 | 3.7 | ATCGCATAAGTATTGACT | ||
| Shewanella pealeana ATCC 700345 | Spea_3397 | -239 | 4.7 | AGTACATATTTATTCACA |
| -98 | 4.3 | ATCGAATTTTTACGCATT | ||
| -77 | 4.1 | GATGCATAAGTATTGATT | ||
| -51 | 4 | TATCAGTTTATAGTCAAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3484 | -228 | 5.3 | AATGAATTATTATTCAAC |
| -98 | 4.7 | CTTGAATTTTTAATCAAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3760 | -98 | 5.2 | AGTGAATTTATAATCATT |
| -77 | 3.7 | CACGCATAATTATTGACT | ||
|
Position: -124
Score: 4.9 Sequence: GTTGAATGAAAATGCACC
Locus tag: Sputw3181_1204
|
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| Sputw3181_1204 | -124 | 4.9 | GTTGAATGAAAATGCACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argW | ||||
| Ortholog function: Predicted arginine uptake transporter, COG3314 family | ||||
| Shewanella oneidensis MR-1 | SO_1245 | -99 | 4.8 | GTTGAATGAAAATGCAGC |
| Shewanella putrefaciens CN-32 | Sputcn32_2808 | -124 | 4.9 | GTTGAATGAAAATGCACC |
| Shewanella sp W3-18-1 | Sputw3181_1204 | -124 | 4.9 | GTTGAATGAAAATGCACC |
| Shewanella sp ANA-3 | Shewana3_1062 | -99 | 4.9 | GTTGAATGAAAATGCACC |
| Shewanella sp MR-4 | Shewmr4_1058 | -98 | 4.8 | GTTGAATGAAAATGCATC |
| Shewanella sp MR-7 | Shewmr7_1129 | -98 | 4.8 | GTTGAATGAAAATGCATC |
| Shewanella baltica OS155 | Sbal_3205 | -99 | 5.2 | GTTGAATTTAAATGCACC |
| Shewanella denitrificans OS217 | Sden_1037 | -98 | 4.1 | ACTCTATTTTTATGCAGC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1012 | -88 | 4.8 | ACTGAATGGACATTCAAT |
| Shewanella amazonensis SB2B | Sama_0994 | -102 | 4.2 | CCTGCATGGACATGCACT |
| Shewanella loihica PV-4 | Shew_2790 | -90 | 4.5 | CATGAATGGATATTCAGA |
| Shewanella pealeana ATCC 700345 | Spea_3024 | -93 | 4.9 | GTTGAATGGATATTCAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3114 | -91 | 4.9 | GTTGAATGGATATTCAAT |
| Shewanella piezotolerans WP3 | swp_1256 | -90 | 5.2 | GTTGAATGAATATTCAAT |
| Shewanella sediminis HAW-EB3 | Ssed_3353 | -58 | 4.8 | TTTGAATGGATATTCATA |
| Shewanella woodyi ATCC 51908 | Swoo_3520 | -89 | 4.6 | CATGAATGGATATTCAGT |
|
Position: -71
Score: 4.6 Sequence: ACTGTATATAAAATCAGT
Locus tag: Sputw3181_1241
|
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| Sputw3181_1241 | -71 | 4.6 | ACTGTATATAAAATCAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recN | ||||
| Ortholog function: DNA repair protein RecN | ||||
| Shewanella oneidensis MR-1 | SO_3462 | -71 | 4.6 | ACTGTATATAAAATCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2771 | -71 | 4.6 | ACTGTATATAAAATCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp W3-18-1 | Sputw3181_1241 | -71 | 4.6 | ACTGTATATAAAATCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp ANA-3 | Shewana3_1104 | -71 | 5.1 | ACTGTATATAAATTCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp MR-4 | Shewmr4_1104 | -71 | 5.1 | ACTGTATATAAATTCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp MR-7 | Shewmr7_1170 | -71 | 5.1 | ACTGTATATAAATTCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella baltica OS155 | Sbal_3153 | -137 | 3.6 | CATGCATAATCAGTTAAT |
| -71 | 4.6 | ACTGTATATAAAATCAGT | ||
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella denitrificans OS217 | Sden_1151 | -95 | 3.7 | ACTCAAAATTAACTCAGC |
| -70 | 3.9 | ACTGTATAAAAAACCAGT | ||
| -48 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1043 | -112 | 3.6 | GATGATAAAATAGTCAAC |
| -71 | 4.6 | ACTGTATATAAAATCAGT | ||
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella amazonensis SB2B | Sama_1026 | -72 | 3.8 | ACTGTACAAAAAATCAGT |
| -50 | 3.7 | ACTGTGTATCAATACAGT | ||
| Shewanella loihica PV-4 | Shew_1196 | -61 | 5.1 | ACTGTATAAAAATTCAGT |
| Shewanella sediminis HAW-EB3 | Ssed_1281 | -61 | 4.6 | ACTGTATATAAAATCAGT |
|
Position: -84
Score: 4.5 Sequence: TTTGAACAAACATTCAAA
Position: -60
Score: 4.7 Sequence: CTTGAATGTTCATTCAAA
Locus tag: Sputw3181_1292
|
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| Sputw3181_1292 | -84 | 4.5 | TTTGAACAAACATTCAAA | |
| -60 | 4.7 | CTTGAATGTTCATTCAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3392 | ||||
| Ortholog function: NADH-dependent flavin oxidoreductase, Oye family | ||||
| Shewanella oneidensis MR-1 | SO_3392 | -84 | 4.6 | ATTGAACAAACATTCAAA |
| -60 | 4.6 | CTTGAATGATCATTCAAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2720 | -84 | 4.5 | TTTGAACAAACATTCAAA |
| -60 | 4.7 | CTTGAATGTTCATTCAAA | ||
| -33 | 4 | CTTGAATGCACATTCAAG | ||
| Shewanella sp W3-18-1 | Sputw3181_1292 | -84 | 4.5 | TTTGAACAAACATTCAAA |
| -60 | 4.7 | CTTGAATGTTCATTCAAA | ||
| -33 | 4 | CTTGAATGCACATTCAAG | ||
| Shewanella sp ANA-3 | Shewana3_1159 | -84 | 4.5 | TTTGAACAAACATTCAAA |
| -60 | 3.9 | CTTGAATGATCGTTCAAA | ||
| -33 | 4 | CTTGAATGCACATTCAAG | ||
| Shewanella sp MR-4 | Shewmr4_1158 | -84 | 4.5 | TTTGAACAAACATTCAAA |
| -60 | 3.9 | CTTGAATGATCGTTCAAA | ||
| Shewanella sp MR-7 | Shewmr7_1229 | -84 | 4.5 | TTTGAACAAACATTCAAA |
| -60 | 3.9 | CTTGAATGATCGTTCAAA | ||
| -33 | 4.2 | CTTGAATGCATATTCAAG | ||
| Shewanella baltica OS155 | Sbal_1249 | -84 | 4.9 | TTTGAATGAACATTCAAA |
| -33 | 4.2 | CTTGAATGCATATTCAAG | ||
| Shewanella denitrificans OS217 | Sden_1230 | -81 | 4.7 | TTTGAAAAATTATTCAAA |
| -58 | 4.2 | CTTGAATGAATGTTCAAA | ||
| -31 | 4 | CTTGAATGCACATTCAAG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1089 | -61 | 4.4 | CTTGAATGTGCATTCAAT |
| -33 | 4.2 | CTTGAATGCATATTCAAG | ||
| Shewanella amazonensis SB2B | Sama_2407 | -85 | 4.5 | TTTGAATGTATGTTCAAA |
| -61 | 4 | CTTGAATGTATGTTCAAG | ||
| -34 | 3.7 | TTTGAATGCCTGTTCAAA | ||
| Shewanella loihica PV-4 | Shew_3098 | -83 | 4.2 | TTTGAATGAACGTTCAAA |
| Shewanella piezotolerans WP3 | swp_0975 | -83 | 4.5 | TTTGAATGTTTGTTCAAA |
| -59 | 4.8 | CTTGAATGATTATTCAAA | ||
| -32 | 4.4 | CTTGAATGTTCATTCAAG | ||
| Shewanella sediminis HAW-EB3 | Ssed_3644 | -83 | 4.5 | TTTGAATGTTTGTTCAAA |
| -59 | 3.9 | CTTGAATGATCGTTCAAA | ||
| -32 | 4.4 | CTTGAATGAACATTCAAG | ||
| Shewanella woodyi ATCC 51908 | Swoo_4055 | -83 | 4.5 | TTTGAATGTTTGTTCAAA |
| -59 | 3.9 | CTTGAATGATCGTTCAAA | ||
| -32 | 4.4 | CTTGAATGAACATTCAAG | ||
|
Position: -156
Score: 5.6 Sequence: ATTGAATTTTTATTCACA
Locus tag: Sputw3181_1531
|
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| Sputw3181_1531 | -156 | 5.6 | ATTGAATTTTTATTCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aprE | ||||
| Ortholog function: Alkaline serine protease | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2477 | -156 | 5.6 | ATTGAATTTTTATTCACA |
| Shewanella sp W3-18-1 | Sputw3181_1531 | -156 | 5.6 | ATTGAATTTTTATTCACA |
| Shewanella sp ANA-3 | Shewana3_1443 | -190 | 4.7 | CATGAGTATTTATTCATT |
| Shewanella sp MR-4 | Shewmr4_1390 | -190 | 4.9 | TATGAGTATTTATTCATT |
| -123 | 3.8 | ATTTAATTTACAAACACT | ||
| Shewanella sp MR-7 | Shewmr7_1455 | -190 | 4.9 | TATGAGTATTTATTCATT |
| -123 | 3.8 | ATTTAATTTACAAACACT | ||
| Shewanella baltica OS155 | Sbal_2779 | -189 | 5.4 | GTTGAATTTATATTCACA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2692 | -190 | 5.4 | GTTGAATTTTAATTCAAA |
| Shewanella amazonensis SB2B | Sama_2185 | -236 | 4.3 | TCCGAATATTCATTCAGC |
| -185 | 4.5 | TTTGCATAAATATTCTAA | ||
| Shewanella loihica PV-4 | Shew_2443 | -229 | 4.2 | TTCGAATAAATACTCAAA |
| -166 | 4.5 | TCTGCATAAAAATGCTCT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1611 | -187 | 4.2 | ACGCAATATTTATTCAGT |
| Shewanella woodyi ATCC 51908 | Swoo_3041 | -240 | 4.2 | GTCGCATATTAATTCAGG |
|
Position: -225
Score: 4 Sequence: AGTCACTTTTTAATCAAA
Position: -131
Score: 4.2 Sequence: TATGCATTTATCGTCAAA
Locus tag: Sputw3181_1757
|
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| Sputw3181_1757 | -225 | 4 | AGTCACTTTTTAATCAAA | |
| -131 | 4.2 | TATGCATTTATCGTCAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astB | ||||
| Ortholog function: Succinylarginine dihydrolase (EC 3.5.3.23) | ||||
| Shewanella oneidensis MR-1 | SO_2706 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -142 | 3.6 | AAGAAATAGTTATGCATT | ||
| -40 | 4.1 | TTTGAATAAATAATAACC | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2251 | -225 | 4 | AGTCACTTTTTAATCAAA |
| -131 | 4.2 | TATGCATTTATCGTCAAA | ||
| Shewanella sp W3-18-1 | Sputw3181_1757 | -225 | 4 | AGTCACTTTTTAATCAAA |
| -131 | 4.2 | TATGCATTTATCGTCAAA | ||
| Shewanella sp ANA-3 | Shewana3_1728 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -132 | 3.6 | TATGCATTTATCGTGAAA | ||
| -40 | 4.1 | TTTGAATAAATAATAACC | ||
| Shewanella sp MR-4 | Shewmr4_1584 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -142 | 3.6 | AAGAAATAGTTATGCATT | ||
| Shewanella sp MR-7 | Shewmr7_1659 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -142 | 3.6 | AAGAAATAGTTATGCATT | ||
| Shewanella baltica OS155 | Sbal_2497 | -226 | 4 | AGTCACTTTTTAATCAAA |
| -132 | 3.6 | TATGCATTTATCGTGAAA | ||
| -40 | 3.6 | TATGAACAAATAATAACT | ||
| Shewanella denitrificans OS217 | Sden_2329 | -201 | 4.7 | CTTGCATTTTTAATCACT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2479 | -186 | 5 | AGTGCATTTTTAGTCATT |
| Shewanella amazonensis SB2B | Sama_1321 | -233 | 4.1 | AGTCACTTTTTAATCAAT |
| -147 | 3.6 | AAGCAATAGTTATGCAAA | ||
| Shewanella pealeana ATCC 700345 | Spea_1534 | -137 | 5 | TGTGCATTTCAATTCAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1604 | -169 | 4.1 | ATTTCATTAATAGTCATC |
| -137 | 4.6 | TGTGCATTTTGATGCAAA | ||
| Shewanella piezotolerans WP3 | swp_1743 | -167 | 4 | ATTTCATTATTAGTCATC |
| -135 | 4.6 | TGTGCATTTTGATGCAAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_2842 | -354 | 4 | ATTTCATTATTAGTCATC |
| -322 | 4.3 | TGTGCATTTCGATGCAAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_1802 | -236 | 4 | ATTTCATTATTAGTCATC |
| -204 | 5 | TGTGAATTTCAATGCAAA | ||
|
Position: -179
Score: 3.8 Sequence: AATAAACAATAATGCAAC
Locus tag: Sputw3181_2068
|
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| Sputw3181_2068 | -179 | 3.8 | AATAAACAATAATGCAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp(Arg) | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO_2427 | -383 | 4.7 | TATGCATATTTTTTCATT |
| -204 | 3.7 | TATGTGTAAGCATTCAAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1940 | -478 | 4 | TGTGCATAAAAATTACAT |
| Shewanella sp W3-18-1 | Sputw3181_2068 | -517 | 3.8 | GATGCATATTTGTTAATT |
| -478 | 4 | TGTGCATAAAAATTACAT | ||
| Shewanella sp ANA-3 | Shewana3_1958 | -468 | 3.9 | AATCACAATTTATTCATT |
| -384 | 3.8 | TATGCATATTTCTCCATA | ||
| -106 | 3.6 | ACTGAATGAAAGTGAATC | ||
| Shewanella sp MR-4 | Shewmr4_1903 | -457 | 3.5 | AATCACAAGTTATTCATT |
| -373 | 3.6 | CGTGCATAATTAATCGAC | ||
| -105 | 3.6 | ACTGAATGAAAGTGAATC | ||
| Shewanella sp MR-7 | Shewmr7_2075 | -457 | 3.5 | AATCACAAGTTATTCATT |
| -373 | 3.9 | TGTGCATAATTAATCGAC | ||
| -105 | 3.6 | ACTGAATGAAAGTGAATC | ||
| Shewanella baltica OS155 | Sbal_2044 | -487 | 3.8 | TTTGCATAAATATTACAA |
| -390 | 3.5 | TGTCTATAGCTATGCATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2416 | -451 | 4.9 | TCTGAATAAATACTCAGT |
| -72 | 4.2 | ACTGACCAATTATTCATA | ||
| Shewanella amazonensis SB2B | Sama_1838 | -201 | 5.5 | TTTGAATAAATATTCAGT |
| Shewanella loihica PV-4 | Shew_2074 | -609 | 4.7 | AGTGCATTTAAATTGAAG |
| Shewanella piezotolerans WP3 | swp_2362 | -612 | 4 | TGTGATTTTTAATGCCTC |
| -393 | 3.7 | AGTTCATTTAATATCAAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_2036 | -287 | 3.6 | TTTGCATGGTTAGTGAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2565 | -598 | 3.9 | TGTGCATATAATTTAATC |
| -551 | 4.3 | GATGAGTATATATTGATT | ||
|
Position: -25
Score: 4.7 Sequence: AATGAAAATAAATTCAGG
Locus tag: Sputw3181_2358
|
||||
| Sputw3181_2358 | -25 | 4.7 | AATGAAAATAAATTCAGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ggt2 | ||||
| Ortholog function: Gamma-glutamyltranspeptidase (EC 2.3.2.2) | ||||
| Shewanella oneidensis MR-1 | SO_1952 | -25 | 4.7 | AATGAAAATAAATTCAGG |
| Shewanella putrefaciens CN-32 | Sputcn32_1667 | -25 | 4.7 | AATGAAAATAAATTCAGG |
| Shewanella sp W3-18-1 | Sputw3181_2358 | -25 | 4.7 | AATGAAAATAAATTCAGG |
| Shewanella sp ANA-3 | Shewana3_2487 | -25 | 4.7 | AATGAAAATAAATTCAGG |
| Shewanella sp MR-4 | Shewmr4_2297 | -25 | 4.7 | AATGAAAATAAATTCAGG |
| Shewanella sp MR-7 | Shewmr7_2369 | -25 | 4.7 | AATGAAAATAAATTCAGG |
| Shewanella baltica OS155 | Sbal_2620 | -25 | 4.7 | AATGAAAATAAATTCAGG |
|
Position: -172
Score: 5 Sequence: AGTGCATAAAAATACATT
Locus tag: Sputw3181_2420
|
||||
| Sputw3181_2420 | -172 | 5 | AGTGCATAAAAATACATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2753 | ||||
| Ortholog function: Prolyl endopeptidase (EC 3.4.21.26) | ||||
| Shewanella oneidensis MR-1 | SO_2753 | -445 | 4.1 | AATGCATTTGCAATCAAC |
| -173 | 5 | AATGCATAAAAATACACT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1602 | -444 | 4.1 | AATGCATTTGCAATCAAC |
| -193 | 3.6 | AATAACTTATCAATCAGT | ||
| -172 | 5 | AGTGCATAAAAATACATT | ||
| Shewanella sp W3-18-1 | Sputw3181_2420 | -444 | 4.1 | AATGCATTTGCAATCAAC |
| -193 | 3.6 | AATAACTTATCAATCAGT | ||
| -172 | 5 | AGTGCATAAAAATACATT | ||
| Shewanella sp ANA-3 | Shewana3_2536 | -444 | 4.1 | AATGCATTTGCAATCAAC |
| -172 | 5 | AATGCATAAAAATACACT | ||
| Shewanella sp MR-4 | Shewmr4_2373 | -445 | 4.1 | AATGCATTTGCAATCAAC |
| -182 | 4.2 | AGTCAAAATTAATGCATA | ||
| -172 | 5 | AATGCATAAAAATACACT | ||
| Shewanella sp MR-7 | Shewmr7_2445 | -445 | 4.1 | AATGCATTTGCAATCAAC |
| -172 | 5 | AATGCATAAAAATACACT | ||
| Shewanella baltica OS155 | Sbal_1741 | -444 | 4.1 | AATGCATTTGCAATCAAC |
| -192 | 3.9 | AATAACTTATAAATCACT | ||
| -171 | 4.9 | AGTGCATAATAATACACT | ||
| Shewanella pealeana ATCC 700345 | Spea_2569 | -297 | 4.2 | ATTGAATAAAGATGAACT |
| -215 | 3.9 | CATGATATTTAATTCATC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1686 | -230 | 3.9 | CATGATATTTAATTCATC |
|
Position: -312
Score: 4.3 Sequence: TTTGCAATAAAAATCACT
Position: -147
Score: 4.2 Sequence: TATGAATTAATACCCATA
Locus tag: Sputw3181_3028
|
||||
| Sputw3181_3028 | -312 | 4.3 | TTTGCAATAAAAATCACT | |
| -147 | 4.2 | TATGAATTAATACCCATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | ||||
| Shewanella oneidensis MR-1 | SO_1325 | -359 | 4.5 | AAAGAATAACAATTCACT |
| -313 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1136 | -358 | 4.7 | GAAGAATAAAAATTCACT |
| -312 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella sp W3-18-1 | Sputw3181_3028 | -358 | 4.8 | GGAGAATAAAAATTCACT |
| -312 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella sp ANA-3 | Shewana3_3050 | -360 | 4.5 | ATAGAATAACAATTCATT |
| -339 | 4 | TATAAATTTTTATACATC | ||
| -314 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella sp MR-4 | Shewmr4_2872 | -359 | 4.5 | AAAGAATAACAATTCACT |
| -313 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella sp MR-7 | Shewmr7_2954 | -359 | 4.5 | AAAGAATAACAATTCACT |
| -313 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella baltica OS155 | Sbal_1178 | -361 | 5.3 | AATGAATAATAATTCAAC |
| -315 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella denitrificans OS217 | Sden_2790 | -359 | 5.1 | AGTGAATATTTAGTCAGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2951 | -358 | 5 | AATGAATATTTAATCATT |
| -312 | 4.3 | TTTAAAATAAAATTCACT | ||
| Shewanella amazonensis SB2B | Sama_0857 | -362 | 4.6 | TTTGAATAGTTAATCAAT |
| -316 | 4 | CCTGCAAAAAAAATCACT | ||
| Shewanella loihica PV-4 | Shew_1032 | -324 | 3.8 | TTTGTTAAATAATTCACT |
| -303 | 4.3 | TATGCAATAAAAATCACT | ||
| Shewanella pealeana ATCC 700345 | Spea_1013 | -354 | 4.9 | AATGCATAAATAGTCACA |
| -330 | 4.3 | AGTGATTATCATTTCACT | ||
| -309 | 4.3 | TCTGCAAAAAAAATCACT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1061 | -355 | 4.6 | TATGCATAAATAAGCAAA |
| -331 | 3.8 | AGTGACTACCATTTCACT | ||
| -310 | 4 | TCTGCAAGAAAAATCACT | ||
| Shewanella piezotolerans WP3 | swp_3803 | -355 | 4.4 | TCTGCATAATTAGTCAAG |
| -331 | 4.3 | AGTGACTATCATTTCACT | ||
| -310 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1126 | -301 | 4.1 | CGTGCAAAAAAAATCACT |
| -127 | 4.3 | ACTCAAATTTTATGCAAT | ||
| -62 | 3.8 | GGTGAATATCTATACTAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_1221 | -349 | 4.7 | ACTGCATAAATAAGCAAA |
| -314 | 3.9 | ATTCATTATATTTGCAAT | ||
|
Position: -230
Score: 4.6 Sequence: TATGATTGATAATGCAAT
Locus tag: Sputw3181_3070
|
||||
| Sputw3181_3070 | -230 | 4.6 | TATGATTGATAATGCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: potF | ||||
| Ortholog function: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2) | ||||
| Shewanella oneidensis MR-1 | SO_1270 | -226 | 4.2 | TTTGCTTGTTAATGCAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1094 | -230 | 4.6 | TATGATTGATAATGCAAT |
| Shewanella sp W3-18-1 | Sputw3181_3070 | -230 | 4.6 | TATGATTGATAATGCAAT |
| Shewanella sp ANA-3 | Shewana3_3097 | -376 | 3.9 | TTTGAAATCCCATTCAAT |
| -164 | 4.2 | ACTGCTTGTTAATGCAAG | ||
| Shewanella sp MR-4 | Shewmr4_2918 | -427 | 4.4 | AGTGCTTTTAAATTGAAA |
| -375 | 4.2 | TGTGAAATCTCATTCAAT | ||
| -164 | 4.2 | TGTGCTTGTTAATGCAAG | ||
| Shewanella sp MR-7 | Shewmr7_3000 | -427 | 4.4 | AGTGCTTTTAAATTGAAA |
| -375 | 4.2 | TGTGAAATCTCATTCAAT | ||
| -164 | 4.2 | TGTGCTTGTTAATGCAAG | ||
| Shewanella baltica OS155 | Sbal_1108 | -225 | 4.7 | TTTGAGTGTTAATGCAAT |
| Shewanella denitrificans OS217 | Sden_3031 | -266 | 4.9 | AATGAGTTTTTATGCAAA |
| -163 | 4.3 | GCTGATTAATCATGCAAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3009 | -249 | 3.9 | ACTGAATGATTATTGCAA |
| -228 | 4 | AGTGATTTTTTAACCAAT | ||
| Shewanella amazonensis SB2B | Sama_2642 | -239 | 4.1 | ACTGATTTTTAAAGCAAG |
| -177 | 3.6 | ACTGAGTGCATATTAAAA | ||
| Shewanella loihica PV-4 | Shew_0973 | -179 | 4.2 | ATTAGATATAAATTCATA |
| Shewanella sediminis HAW-EB3 | Ssed_1061 | -257 | 3.9 | TGTGACTGACGATTCAAT |
|
Position: -265
Score: 4.3 Sequence: TATCCTTATAAATTCACT
Position: -154
Score: 4.3 Sequence: TGTGAATATTTAGTCTTT
Position: -133
Score: 4 Sequence: TGTGATTTTATATGCTGC
Locus tag: Sputw3181_3136
|
||||
| Sputw3181_3136 | -265 | 4.3 | TATCCTTATAAATTCACT | |
| -154 | 4.3 | TGTGAATATTTAGTCTTT | ||
| -133 | 4 | TGTGATTTTATATGCTGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oadG | ||||
| Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1029 | -265 | 4.3 | TATCCTTATAAATTCACT |
| -154 | 4.3 | TGTGAATATTTAGTCTTT | ||
| -133 | 4 | TGTGATTTTATATGCTGC | ||
| Shewanella sp W3-18-1 | Sputw3181_3136 | -265 | 4.3 | TATCCTTATAAATTCACT |
| -154 | 4.3 | TGTGAATATTTAGTCTTT | ||
| -133 | 4 | TGTGATTTTATATGCTGC | ||
| Shewanella sp MR-7 | Shewmr7_3069 | -322 | 3.9 | ATTCAATTTAAAGGCCAT |
| -176 | 3.7 | AACGAATGTTCATTTAAT | ||
| Shewanella baltica OS155 | Sbal_1024 | -139 | 4.9 | TGTGATTTTTTATTCAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1065 | -182 | 3.8 | GTTGAATAATCGTTGAGT |
| -165 | 4.6 | TTTGAATATTTATGCTTT | ||
| Shewanella amazonensis SB2B | Sama_1051 | -352 | 4.1 | ACTGCATATACTTCCACT |
| -307 | 3.6 | TCTGCCCATGAATGCAGT | ||
| Shewanella loihica PV-4 | Shew_1219 | -377 | 4.3 | ATTGCATAATCTTGCATA |
| -331 | 4 | ATTCAATTTTCAAGCAGA | ||
| Shewanella pealeana ATCC 700345 | Spea_1198 | -73 | 4.2 | TGTGAATGAATAGTGAAT |
| -62 | 4.1 | AGTGAATATTTATTTTTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1235 | -63 | 4.8 | GGTGAATATTTATTGAGT |
| -43 | 4.1 | CATCCATGTTTATTCACA | ||
| Shewanella piezotolerans WP3 | swp_1378 | -157 | 3.6 | TATCAACAGAAATGCATA |
| -136 | 4.4 | TGTGAATAAATAGTGATT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1320 | -322 | 4.4 | ACTGCATAACTTTTCATT |
| Shewanella woodyi ATCC 51908 | Swoo_3337 | -110 | 4.4 | AATGAATAAAAAGTTATT |
|
Position: -11
Score: 4.1 Sequence: AAGGAGTTTTTATGCATA
Locus tag: Sputw3181_3526
|
||||
| Sputw3181_3526 | -11 | 4.1 | AAGGAGTTTTTATGCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0620 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO_0620 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0648 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAC | ||
| Shewanella sp W3-18-1 | Sputw3181_3526 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAC | ||
| Shewanella sp ANA-3 | Shewana3_0613 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella sp MR-4 | Shewmr4_0614 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella sp MR-7 | Shewmr7_3416 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella baltica OS155 | Sbal_0574 | -247 | 3.9 | TATGACTAATTATGCTGA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3296 | -301 | 4.4 | TATGTGTAATTATTCACT |
| -241 | 3.9 | TATGACTATTTATGCTTC | ||
| -189 | 4 | TATCAATCTTTATGCAGA | ||
| Shewanella amazonensis SB2B | Sama_3008 | -308 | 3.8 | TATGTCTATTTATCCAAT |
| -247 | 4.2 | TCTGACTAAATATGCCAT | ||
| Shewanella loihica PV-4 | Shew_0581 | -304 | 5 | TGTGACTATATATTCATA |
| -244 | 4 | TCTGACTATTTATGCTCA | ||
| Shewanella pealeana ATCC 700345 | Spea_3513 | -281 | 3.7 | CGTGAATAACTAGTAATT |
| -242 | 4 | TGTGACTATTTATGCTTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3607 | -242 | 4 | TATGACTATTTATGCTTA |
| Shewanella piezotolerans WP3 | swp_0750 | -244 | 4 | TATGACTAAATATGCTTA |
| Shewanella sediminis HAW-EB3 | Ssed_0812 | -246 | 3.9 | TATGACTAATTATGCTTA |
| Shewanella woodyi ATCC 51908 | Swoo_0658 | -245 | 4.2 | TATGACTAAATATGCTCT |
|
Position: -112
Score: 4.2 Sequence: GCTGAATTTATTCGCACT
Locus tag: Sputw3181_3528
|
||||
| Sputw3181_3528 | -112 | 4.2 | GCTGAATTTATTCGCACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astA | ||||
| Ortholog function: Arginine N-succinyltransferase (EC 2.3.1.109) | ||||
| Shewanella oneidensis MR-1 | SO_0618 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0646 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAC | ||
| Shewanella sp W3-18-1 | Sputw3181_3528 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAC | ||
| Shewanella sp ANA-3 | Shewana3_0611 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella sp MR-4 | Shewmr4_0612 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella sp MR-7 | Shewmr7_3418 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella baltica OS155 | Sbal_0572 | -247 | 3.9 | TATGACTAATTATGCTGA |
| Shewanella denitrificans OS217 | Sden_3192 | -300 | 4.4 | TATGGCTATTTATTCACT |
| -188 | 4.8 | ATTCAATTTATATGCAGA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3298 | -301 | 4.4 | TATGTGTAATTATTCACT |
| -241 | 3.9 | TATGACTATTTATGCTTC | ||
| -189 | 4 | TATCAATCTTTATGCAGA | ||
| Shewanella amazonensis SB2B | Sama_3010 | -308 | 3.8 | TATGTCTATTTATCCAAT |
| -247 | 4.2 | TCTGACTAAATATGCCAT | ||
| Shewanella loihica PV-4 | Shew_0579 | -304 | 5 | TGTGACTATATATTCATA |
| -244 | 4 | TCTGACTATTTATGCTCA | ||
| Shewanella pealeana ATCC 700345 | Spea_3515 | -281 | 3.7 | CGTGAATAACTAGTAATT |
| -242 | 4 | TGTGACTATTTATGCTTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3609 | -242 | 4 | TATGACTATTTATGCTTA |
| Shewanella piezotolerans WP3 | swp_0748 | -244 | 4 | TATGACTAAATATGCTTA |
| Shewanella sediminis HAW-EB3 | Ssed_0810 | -246 | 3.9 | TATGACTAATTATGCTTA |
| Shewanella woodyi ATCC 51908 | Swoo_0656 | -245 | 4.2 | TATGACTAAATATGCTCT |
|
Position: -307
Score: 4.1 Sequence: ATTGTGTAGTTATTCATA
Position: -247
Score: 4 Sequence: TCTGACTAAATATGCTAC
Locus tag: Sputw3181_3529
|
||||
| Sputw3181_3529 | -307 | 4.1 | ATTGTGTAGTTATTCATA | |
| -247 | 4 | TCTGACTAAATATGCTAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astC | ||||
| Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) | ||||
| Shewanella oneidensis MR-1 | SO_0617 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0645 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAC | ||
| Shewanella sp W3-18-1 | Sputw3181_3529 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAC | ||
| Shewanella sp ANA-3 | Shewana3_0610 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella sp MR-4 | Shewmr4_0611 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella sp MR-7 | Shewmr7_3419 | -307 | 4.1 | ATTGTGTAGTTATTCATA |
| -247 | 4 | TCTGACTAAATATGCTAA | ||
| Shewanella baltica OS155 | Sbal_0571 | -247 | 3.9 | TATGACTAATTATGCTGA |
| Shewanella denitrificans OS217 | Sden_3193 | -300 | 4.4 | TATGGCTATTTATTCACT |
| -188 | 4.8 | ATTCAATTTATATGCAGA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3299 | -301 | 4.4 | TATGTGTAATTATTCACT |
| -241 | 3.9 | TATGACTATTTATGCTTC | ||
| -189 | 4 | TATCAATCTTTATGCAGA | ||
| Shewanella amazonensis SB2B | Sama_3011 | -308 | 3.8 | TATGTCTATTTATCCAAT |
| -247 | 4.2 | TCTGACTAAATATGCCAT | ||
| Shewanella loihica PV-4 | Shew_0578 | -304 | 5 | TGTGACTATATATTCATA |
| -244 | 4 | TCTGACTATTTATGCTCA | ||
| Shewanella pealeana ATCC 700345 | Spea_3516 | -281 | 3.7 | CGTGAATAACTAGTAATT |
| -242 | 4 | TGTGACTATTTATGCTTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3610 | -242 | 4 | TATGACTATTTATGCTTA |
| Shewanella piezotolerans WP3 | swp_0747 | -244 | 4 | TATGACTAAATATGCTTA |
| Shewanella sediminis HAW-EB3 | Ssed_0809 | -246 | 3.9 | TATGACTAATTATGCTTA |
| Shewanella woodyi ATCC 51908 | Swoo_0655 | -245 | 4.2 | TATGACTAAATATGCTCT |
|
Position: -214
Score: 4.2 Sequence: CGTGATTATTAAATCACA
Locus tag: Sputw3181_3754
|
||||
| Sputw3181_3754 | -214 | 4.2 | CGTGATTATTAAATCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvG | ||||
| Ortholog function: Acetolactate synthase large subunit (EC 2.2.1.6) | ||||
| Shewanella oneidensis MR-1 | SO_4347 | -216 | 4.2 | CGTGATTATTAAATCACA |
| Shewanella putrefaciens CN-32 | Sputcn32_3614 | -214 | 4.2 | CGTGATTATTAAATCACA |
| Shewanella sp W3-18-1 | Sputw3181_3754 | -214 | 4.2 | CGTGATTATTAAATCACA |
| Shewanella sp ANA-3 | Shewana3_0356 | -201 | 4.5 | AGTGATTATTAAATCACA |
| Shewanella sp MR-4 | Shewmr4_0362 | -201 | 4.5 | AGTGATTATTAAATCACA |
| Shewanella sp MR-7 | Shewmr7_3664 | -219 | 4.5 | AGTGATTATTAAATCACA |
| Shewanella denitrificans OS217 | Sden_3414 | -153 | 4.6 | AGTGATTATTAAGTCACA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0422 | -202 | 4.6 | AGTGATTATTAAGTCACA |
| Shewanella amazonensis SB2B | Sama_3281 | -157 | 4.5 | AGTGATTATTAAATCACA |
| Shewanella loihica PV-4 | Shew_0289 | -166 | 4.5 | AGTGATTATTAAATCACA |
| Shewanella pealeana ATCC 700345 | Spea_0345 | -181 | 4.2 | CGTGATTATTAAATCACA |
| Shewanella halifaxensis HAW-EB4 | Shal_3944 | -193 | 4.2 | CGTGATTATTAAATCACA |
| Shewanella piezotolerans WP3 | swp_0359 | -189 | 4.2 | CGTGATTATTAAATCACA |
| Shewanella woodyi ATCC 51908 | Swoo_0442 | -190 | 4.2 | CGTGATTATTAAATCACA |
|
Position: -193
Score: 4.2 Sequence: TATGAAAATAAATTAAAA
Position: -180
Score: 4 Sequence: TAAAAATATATATTCACA
Position: -57
Score: 4 Sequence: AGTGAATAAAATAACAAT
Locus tag: Sputw3181_3860
|
||||
| Sputw3181_3860 | -193 | 4.2 | TATGAAAATAAATTAAAA | |
| -180 | 4 | TAAAAATATATATTCACA | ||
| -57 | 4 | AGTGAATAAAATAACAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Shewanella oneidensis MR-1 | SO_0275 | -327 | 3.6 | ATTGAAATATTAAGTAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| -127 | 3.7 | AGTGAATAAAATAACAAG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3717 | -192 | 4.2 | TATGAAAATAAATTAAAA |
| -57 | 3.8 | AGTGAATAAAATAACAAC | ||
| Shewanella sp W3-18-1 | Sputw3181_3860 | -193 | 4.2 | TATGAAAATAAATTAAAA |
| -180 | 4 | TAAAAATATATATTCACA | ||
| -57 | 4 | AGTGAATAAAATAACAAT | ||
| Shewanella sp ANA-3 | Shewana3_3905 | -357 | 3.7 | ACTGATTTTTCAGTCTTT |
| -327 | 4.4 | ACTGAGTTATTAAGCAGT | ||
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella sp MR-4 | Shewmr4_3709 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella sp MR-7 | Shewmr7_0236 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella baltica OS155 | Sbal_4124 | -471 | 4.2 | ATTCAATATAAATGCGAA |
| -252 | 4 | TAAAAATATATATTCACA | ||
| -130 | 3.8 | AGTGAATAAAATAACAAC | ||
| Shewanella denitrificans OS217 | Sden_0250 | -235 | 4.3 | AATAAATATGTATTCACA |
| -214 | 3.7 | ATTGCATAACAATTTGAT | ||
| -145 | 4.3 | ATCGAATATAAAAGCACA | ||
| Shewanella amazonensis SB2B | Sama_0256 | -241 | 3.7 | AATAGATATTCATGCATA |
| Shewanella loihica PV-4 | Shew_0202 | -249 | 3.7 | TAAAAATATCTATTCAAT |
| -228 | 3.5 | ATTGCATAATTAGTTTGT | ||
| Shewanella pealeana ATCC 700345 | Spea_0227 | -266 | 3.8 | CCCAAATATATATTCAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4093 | -267 | 4.5 | CCTAAATATATATTCAAA |
| Shewanella piezotolerans WP3 | swp_2055 | -266 | 4.5 | CCTAAATATATATTCAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4276 | -256 | 4 | GTAAAATATATATTCAAA |
| -235 | 3.5 | ATTGCATAATTAGTTTGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0329 | -423 | 3.5 | TTTGCATTCAAAACCAAG |
| -263 | 4 | GTAAAATATATATTCAAA | ||