Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AraR regulog to Shewanella sp W3-18-1

Reference regulog properties
Source regulog: AraR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp W3-18-1
Orthologous TF(s) Sputw3181_1948
Regulated genes 4
Built upon 30 sites [see more]
Predicted regulatory interactions in Shewanella sp W3-18-1
Locus tag Position Score Sequence
Position: -80
Score: 6.1
Sequence: TAGTAGTATTGTAGTACTA
Locus tag: Sputw3181_1944
Sputw3181_1944 -80 6.1 TAGTAGTATTGTAGTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: Ribulokinase (EC 2.7.1.16)
Shewanella putrefaciens CN-32 Sputcn32_2068 -107 5.3 AAATAATATTGTAATACCA
-80 6.1 TAGTAGTATTGTAGTACTA
Shewanella sp W3-18-1 Sputw3181_1944 -107 5.3 AAATAATATTGTAATACCA
-80 6.1 TAGTAGTATTGTAGTACTA
Position: -45
Score: 6.1
Sequence: TGGTATTACTATAATACTA
Locus tag: Sputw3181_1949
Sputw3181_1949 -45 6.1 TGGTATTACTATAATACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arb43
Ortholog function: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase
Shewanella putrefaciens CN-32 Sputcn32_2063 -45 6.1 TGGTATTACTATAATACTA
Shewanella sp W3-18-1 Sputw3181_1949 -45 6.1 TGGTATTACTATAATACTA
Shewanella sp ANA-3 Shewana3_2069 -45 6 TGGTATTACTATAATACCA
Shewanella sp MR-4 Shewmr4_1982 -45 6 TGGTATTACTATAATACCA
Shewanella sp MR-7 Shewmr7_1992 -45 6 TGGTATTACTATAATACCA
Position: -178
Score: 6.1
Sequence: TAGTATTATAGTAATACCA
Locus tag: Sputw3181_1950
Sputw3181_1950 -178 6.1 TAGTATTATAGTAATACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araC
Ortholog function: L-arabonate dehydratase (EC 4.2.1.25)
Shewanella putrefaciens CN-32 Sputcn32_2062 -178 6.1 TAGTATTATAGTAATACCA
Shewanella sp W3-18-1 Sputw3181_1950 -178 6.1 TAGTATTATAGTAATACCA
Shewanella sp ANA-3 Shewana3_2070 -123 6 TGGTATTATAGTAATACCA
Shewanella sp MR-4 Shewmr4_1983 -150 6 TGGTATTATAGTAATACCA
Shewanella sp MR-7 Shewmr7_1991 -150 6 TGGTATTATAGTAATACCA
Position: -88
Score: 5.4
Sequence: CAGTAGTATTGTATTACAT
Locus tag: Sputw3181_1965
Sputw3181_1965 -88 5.4 CAGTAGTATTGTATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: abnA
Ortholog function: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Shewanella putrefaciens CN-32 Sputcn32_2047 -88 5.4 CAGTAGTATTGTATTACAT
Shewanella sp W3-18-1 Sputw3181_1965 -88 5.4 CAGTAGTATTGTATTACAT
Shewanella sp ANA-3 Shewana3_2086 -85 5.8 CAGTAGTATTGTATTACTT
Shewanella sp MR-4 Shewmr4_1999 -85 5.8 CAGTAGTATTGTATTACTT
Shewanella sp MR-7 Shewmr7_1976 -85 5.8 CAGTAGTATTGTATTACTT
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