Propagation of AraR regulog to Shewanella sp W3-18-1
| Source regulog: | AraR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Arabinose utilization |
| Effector: | Arabinose |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella sp W3-18-1 |
| Orthologous TF(s) | Sputw3181_1948 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -80
Score: 6.1 Sequence: TAGTAGTATTGTAGTACTA
Locus tag: Sputw3181_1944
|
||||
| Sputw3181_1944 | -80 | 6.1 | TAGTAGTATTGTAGTACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araB | ||||
| Ortholog function: Ribulokinase (EC 2.7.1.16) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2068 | -107 | 5.3 | AAATAATATTGTAATACCA |
| -80 | 6.1 | TAGTAGTATTGTAGTACTA | ||
| Shewanella sp W3-18-1 | Sputw3181_1944 | -107 | 5.3 | AAATAATATTGTAATACCA |
| -80 | 6.1 | TAGTAGTATTGTAGTACTA | ||
|
Position: -45
Score: 6.1 Sequence: TGGTATTACTATAATACTA
Locus tag: Sputw3181_1949
|
||||
| Sputw3181_1949 | -45 | 6.1 | TGGTATTACTATAATACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arb43 | ||||
| Ortholog function: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2063 | -45 | 6.1 | TGGTATTACTATAATACTA |
| Shewanella sp W3-18-1 | Sputw3181_1949 | -45 | 6.1 | TGGTATTACTATAATACTA |
| Shewanella sp ANA-3 | Shewana3_2069 | -45 | 6 | TGGTATTACTATAATACCA |
| Shewanella sp MR-4 | Shewmr4_1982 | -45 | 6 | TGGTATTACTATAATACCA |
| Shewanella sp MR-7 | Shewmr7_1992 | -45 | 6 | TGGTATTACTATAATACCA |
|
Position: -178
Score: 6.1 Sequence: TAGTATTATAGTAATACCA
Locus tag: Sputw3181_1950
|
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| Sputw3181_1950 | -178 | 6.1 | TAGTATTATAGTAATACCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araC | ||||
| Ortholog function: L-arabonate dehydratase (EC 4.2.1.25) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2062 | -178 | 6.1 | TAGTATTATAGTAATACCA |
| Shewanella sp W3-18-1 | Sputw3181_1950 | -178 | 6.1 | TAGTATTATAGTAATACCA |
| Shewanella sp ANA-3 | Shewana3_2070 | -123 | 6 | TGGTATTATAGTAATACCA |
| Shewanella sp MR-4 | Shewmr4_1983 | -150 | 6 | TGGTATTATAGTAATACCA |
| Shewanella sp MR-7 | Shewmr7_1991 | -150 | 6 | TGGTATTATAGTAATACCA |
|
Position: -88
Score: 5.4 Sequence: CAGTAGTATTGTATTACAT
Locus tag: Sputw3181_1965
|
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| Sputw3181_1965 | -88 | 5.4 | CAGTAGTATTGTATTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: abnA | ||||
| Ortholog function: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2047 | -88 | 5.4 | CAGTAGTATTGTATTACAT |
| Shewanella sp W3-18-1 | Sputw3181_1965 | -88 | 5.4 | CAGTAGTATTGTATTACAT |
| Shewanella sp ANA-3 | Shewana3_2086 | -85 | 5.8 | CAGTAGTATTGTATTACTT |
| Shewanella sp MR-4 | Shewmr4_1999 | -85 | 5.8 | CAGTAGTATTGTATTACTT |
| Shewanella sp MR-7 | Shewmr7_1976 | -85 | 5.8 | CAGTAGTATTGTATTACTT |