Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NhaR regulog to Shewanella woodyi ATCC 51908

Reference regulog properties
Source regulog: NhaR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator
Biological process: Osmotic stress response
Effector: Potassium ion
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella woodyi ATCC 51908
Orthologous TF(s) Swoo_1233
Regulated genes 1
Built upon 33 sites [see more]
Predicted regulatory interactions in Shewanella woodyi ATCC 51908
Locus tag Position Score Sequence
Position: -88
Score: 5.2
Sequence: CCTCGATCGTATCGAGG
Locus tag: Swoo_2421
Swoo_2421 -88 5.2 CCTCGATCGTATCGAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoH
Ortholog function: Cbb3-type cytochrome oxidase assembly protein
Shewanella oneidensis MR-1 SO_2360 -88 5.6 CCTCGATAACCTCGAGG
Shewanella putrefaciens CN-32 Sputcn32_1955 -86 5.5 CCTCGAGAGTATCGAGG
Shewanella sp W3-18-1 Sputw3181_2050 -86 5.5 CCTCGAGAGTATCGAGG
Shewanella sp ANA-3 Shewana3_2111 -88 5.6 CCTCGATAACGTCGAGG
Shewanella sp MR-4 Shewmr4_2010 -88 5.6 CCTCGATAACGTCGAGG
Shewanella sp MR-7 Shewmr7_1965 -88 5.6 CCTCGATAACGTCGAGG
Shewanella baltica OS155 Sbal_2205 -88 5.4 CCTCGAAGACTTCGAGG
Shewanella frigidimarina NCIMB 400 Sfri_2014 -94 5.9 CCTCGAGATTATCGAGG
Shewanella pealeana ATCC 700345 Spea_2218 -115 5.3 CCTCGTTAACAACGAGG
Shewanella halifaxensis HAW-EB4 Shal_2201 -114 5.3 CCTCGTCATTAACGAGG
Shewanella piezotolerans WP3 swp_2576 -103 4.9 CCTCGTCACTTACGAGG
Shewanella sediminis HAW-EB3 Ssed_2215 -88 5.6 CCTCGATCTTATCGAGG
Shewanella woodyi ATCC 51908 Swoo_2421 -88 5.2 CCTCGATCGTATCGAGG
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