Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NagR regulog to Shewanella woodyi ATCC 51908

Reference regulog properties
Source regulog: NagR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella woodyi ATCC 51908
Orthologous TF(s) Swoo_1304
Regulated genes 10
Built upon 105 sites [see more]
Predicted regulatory interactions in Shewanella woodyi ATCC 51908
Locus tag Position Score Sequence
Position: -190
Score: 6.4
Sequence: AATGACAGCGTTGTCATT
Locus tag: Swoo_0943
Swoo_0943 -190 6.4 AATGACAGCGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Shewanella loihica PV-4 Shew_0815 -119 6.4 AATGACAACGCTGTCATT
Shewanella pealeana ATCC 700345 Spea_0760 -182 6.4 AATGACAGCGTTGTCATT
Shewanella halifaxensis HAW-EB4 Shal_0813 -84 6.4 AATGACAGCGTTGTCATT
Shewanella piezotolerans WP3 swp_4289 -91 6.4 AATGACAGCGTTGTCATT
Shewanella sediminis HAW-EB3 Ssed_0844 -84 6.4 AATGACAGCGTTGTCATT
Shewanella woodyi ATCC 51908 Swoo_0943 -190 6.4 AATGACAGCGTTGTCATT
Position: -306
Score: 6.4
Sequence: GATGACAGCGTTGTCATC
Locus tag: Swoo_1100
Swoo_1100 -306 6.4 GATGACAGCGTTGTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chiA
Ortholog function: Chitinase (EC 3.2.1.14)
Shewanella sp ANA-3 Shewana3_2984 -214 6.6 AATGACAACGTTGTCATT
Shewanella sp MR-4 Shewmr4_2805 -212 6.6 AATGACAACGTTGTCATT
Shewanella sp MR-7 Shewmr7_2888 -212 6.6 AATGACAACGTTGTCATT
Shewanella baltica OS155 Sbal_3083 -221 6.6 AATGACAACGTTGTCATT
Shewanella denitrificans OS217 Sden_2136 -212 6.4 AATGACAACGCTGTCATT
Shewanella piezotolerans WP3 swp_0647 -249 6.4 AATGACAACGCTGTCATT
Shewanella woodyi ATCC 51908 Swoo_1100 -306 6.4 GATGACAGCGTTGTCATC
Position: -34
Score: 6.2
Sequence: CATGACAGCGTTGTCATT
Locus tag: Swoo_1305
Swoo_1305 -34 6.2 CATGACAGCGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp_nag
Ortholog function: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Shewanella sp ANA-3 Shewana3_3121 -74 6.2 CATGACAGCGTTGTCATT
Shewanella sp MR-4 Shewmr4_2942 -74 6.2 CATGACAGCGTTGTCATT
Shewanella denitrificans OS217 Sden_2708 -76 6.2 CATGACAGCGTTGTCATT
Shewanella amazonensis SB2B Sama_0938 -75 6.2 CATGACAGCGTTGTCATT
Shewanella woodyi ATCC 51908 Swoo_1305 -34 6.2 CATGACAGCGTTGTCATT
Position: -247
Score: 6.4
Sequence: GATGACAACGCTGTCATT
Position: -92
Score: 5.7
Sequence: TATGACAACGCTGTCAAT
Locus tag: Swoo_1308
Swoo_1308 -247 6.4 GATGACAACGCTGTCATT
-92 5.7 TATGACAACGCTGTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: duf81
Ortholog function: protein of unknown function DUF81
Shewanella sp ANA-3 Shewana3_3118 -66 5.2 TGTGACAACGCTGTCTTT
Shewanella sp MR-4 Shewmr4_2939 -68 5 TGTGACAACGCTGTCCTT
Shewanella sp MR-7 Shewmr7_3021 -68 5.2 TGTGACAACGCTGTCTTT
Shewanella baltica OS155 Sbal_1080 -210 6.4 GATGACAGCGTTGTCATT
-64 5.4 TGTGACAACGTTGTCTTT
Shewanella piezotolerans WP3 swp_3708 -129 5.4 AATGACAACGCTGTCTAA
Shewanella woodyi ATCC 51908 Swoo_1308 -92 5.7 TATGACAACGCTGTCAAT
Position: -311
Score: 6.4
Sequence: AATGACAGCGTTGTCATC
Locus tag: Swoo_1309
Swoo_1309 -311 6.4 AATGACAGCGTTGTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pilM
Ortholog function: homolog of type IV pilus assembly protein PilM
Shewanella sp ANA-3 Shewana3_3117 -294 6.4 AATGACAACGCTGTCATC
Shewanella sp MR-4 Shewmr4_2938 -294 6.4 AATGACAACGCTGTCATC
Shewanella sp MR-7 Shewmr7_3020 -294 6.4 AATGACAACGCTGTCATC
Shewanella baltica OS155 Sbal_1081 -304 6.4 AATGACAACGCTGTCATC
Shewanella amazonensis SB2B Sama_0941 -282 6.4 AATGACAGCGTTGTCATT
Shewanella piezotolerans WP3 swp_3707 -277 5.9 TATGACAGCGTTGTCATC
Shewanella woodyi ATCC 51908 Swoo_1309 -311 6.4 AATGACAGCGTTGTCATC
Position: -108
Score: 6.4
Sequence: AATGACAACGCTGTCATT
Locus tag: Swoo_1312
Swoo_1312 -108 6.4 AATGACAACGCTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagK
Ortholog function: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Shewanella oneidensis MR-1 SO_3507 -115 6.4 AATGACAACGCTGTCATT
Shewanella putrefaciens CN-32 Sputcn32_1076 -90 6.4 AATGACAACGCTGTCATC
Shewanella sp W3-18-1 Sputw3181_3089 -90 6.4 AATGACAACGCTGTCATC
Shewanella sp ANA-3 Shewana3_3114 -114 6.4 AATGACAACGCTGTCATT
Shewanella sp MR-4 Shewmr4_2935 -114 6.4 AATGACAACGCTGTCATT
Shewanella sp MR-7 Shewmr7_3017 -114 6.4 AATGACAACGCTGTCATT
Shewanella baltica OS155 Sbal_1084 -113 6.4 AATGACAACGCTGTCATT
Shewanella denitrificans OS217 Sden_2706 -101 6.4 AATGACAACGCTGTCATT
Shewanella amazonensis SB2B Sama_0944 -105 6.4 AATGACAACGCTGTCATT
Shewanella loihica PV-4 Shew_1116 -106 6.4 AATGACAGCGTTGTCATT
Shewanella pealeana ATCC 700345 Spea_1101 -123 6.4 AATGACAACGCTGTCATT
Shewanella halifaxensis HAW-EB4 Shal_1149 -124 6.4 AATGACAACGCTGTCATT
Shewanella piezotolerans WP3 swp_3703 -106 6.4 AATGACAACGCTGTCATT
Shewanella sediminis HAW-EB3 Ssed_1212 -106 6.4 AATGACAACGCTGTCATT
Shewanella woodyi ATCC 51908 Swoo_1312 -108 6.4 AATGACAACGCTGTCATT
Position: -172
Score: 6.1
Sequence: AATGACAGCGTTGTCTTT
Locus tag: Swoo_1315
Swoo_1315 -172 6.1 AATGACAGCGTTGTCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagP
Ortholog function: N-acetylglucosamine transporter, NagP
Shewanella oneidensis MR-1 SO_3503 -175 6.1 AATGACAGCGTTGTCTTT
Shewanella putrefaciens CN-32 Sputcn32_1080 -179 6.1 AATGACAGCGTTGTCTTT
Shewanella sp W3-18-1 Sputw3181_3084 -179 6.1 AATGACAGCGTTGTCTTT
Shewanella sp ANA-3 Shewana3_3110 -177 6.1 AATGACAGCGTTGTCTTT
Shewanella sp MR-4 Shewmr4_2931 -178 6.1 AATGACAGCGTTGTCTTT
Shewanella sp MR-7 Shewmr7_3013 -178 6.1 AATGACAGCGTTGTCTTT
Shewanella baltica OS155 Sbal_1088 -179 6.1 AATGACAGCGTTGTCTTT
Shewanella denitrificans OS217 Sden_2702 -138 5.6 AATGACAGCGTTGTCTTA
Shewanella amazonensis SB2B Sama_0948 -167 6.1 AATGACAGCGTTGTCTTT
Shewanella loihica PV-4 Shew_1119 -186 6.1 AATGACAGCGTTGTCTTT
Shewanella pealeana ATCC 700345 Spea_1104 -198 6.1 AATGACAGCGTTGTCTTT
Shewanella halifaxensis HAW-EB4 Shal_1152 -199 6.1 AATGACAGCGTTGTCTTT
Shewanella piezotolerans WP3 swp_3698 -177 6.1 AATGACAGCGTTGTCTTT
Shewanella sediminis HAW-EB3 Ssed_1215 -168 6.1 AATGACAGCGTTGTCTTT
Shewanella woodyi ATCC 51908 Swoo_1315 -172 6.1 AATGACAGCGTTGTCTTT
Position: -311
Score: 5.9
Sequence: ATTGACAGCGTTATCATT
Locus tag: Swoo_3879
Swoo_3879 -311 5.9 ATTGACAGCGTTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cbp
Ortholog function: Chitn and N-acetylglucosamine-binding protein A
Shewanella oneidensis MR-1 SO_1072 -304 5.6 TTTGACAACGTTGTCTTT
Shewanella sp MR-4 Shewmr4_3027 -300 5.4 TTTGACAACGCTGTCTTT
Shewanella sp MR-7 Shewmr7_0947 -300 5.2 TTTGACAGCGCTGTCTTT
Shewanella baltica OS155 Sbal_0896 -309 5.4 TTTGACAGCGTTGTCTTT
Shewanella denitrificans OS217 Sden_1030 -183 5.2 TTTGACAGCGCTGTCTTT
Shewanella woodyi ATCC 51908 Swoo_3879 -311 5.9 ATTGACAGCGTTATCATT
Position: -36
Score: 5.9
Sequence: TATGACAGCGTTGTCATT
Locus tag: Swoo_3939
Swoo_3939 -36 5.9 TATGACAGCGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp_nag2
Ortholog function: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Shewanella woodyi ATCC 51908 Swoo_3939 -36 5.9 TATGACAGCGTTGTCATT
Position: -99
Score: 5.6
Sequence: AATGACAGCGTTGTCTTA
Locus tag: Swoo_4312
Swoo_4312 -99 5.6 AATGACAGCGTTGTCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdaA
Ortholog function: Peptidoglycan N-acetylglucosamine deacetylase
Shewanella woodyi ATCC 51908 Swoo_4312 -99 5.6 AATGACAGCGTTGTCTTA