Propagation of NagR regulog to Shewanella woodyi ATCC 51908

Reference regulog properties
Source regulog:	NagR - Shewanellaceae
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	N-acetylglucosamine utilization
Effector:	N-acetylglucosamine
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Shewanella woodyi ATCC 51908
Orthologous TF(s)	Swoo_1304
Regulated genes	10

Built upon 105 sites [see more]

Predicted regulatory interactions in *Shewanella woodyi ATCC 51908*
	Locus tag	Position	Score	Sequence
Position: -190 Score: 6.4 Sequence: AATGACAGCGTTGTCATT Locus tag: Swoo_0943
	Swoo_0943	-190	6.4	AATGACAGCGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Shewanella loihica PV-4	Shew_0815	-119	6.4	AATGACAACGCTGTCATT
Shewanella pealeana ATCC 700345	Spea_0760	-182	6.4	AATGACAGCGTTGTCATT
Shewanella halifaxensis HAW-EB4	Shal_0813	-84	6.4	AATGACAGCGTTGTCATT
Shewanella piezotolerans WP3	swp_4289	-91	6.4	AATGACAGCGTTGTCATT
Shewanella sediminis HAW-EB3	Ssed_0844	-84	6.4	AATGACAGCGTTGTCATT
Shewanella woodyi ATCC 51908	Swoo_0943	-190	6.4	AATGACAGCGTTGTCATT

Position: -306 Score: 6.4 Sequence: GATGACAGCGTTGTCATC Locus tag: Swoo_1100
	Swoo_1100	-306	6.4	GATGACAGCGTTGTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chiA
Ortholog function: Chitinase (EC 3.2.1.14)
Shewanella sp ANA-3	Shewana3_2984	-214	6.6	AATGACAACGTTGTCATT
Shewanella sp MR-4	Shewmr4_2805	-212	6.6	AATGACAACGTTGTCATT
Shewanella sp MR-7	Shewmr7_2888	-212	6.6	AATGACAACGTTGTCATT
Shewanella baltica OS155	Sbal_3083	-221	6.6	AATGACAACGTTGTCATT
Shewanella denitrificans OS217	Sden_2136	-212	6.4	AATGACAACGCTGTCATT
Shewanella piezotolerans WP3	swp_0647	-249	6.4	AATGACAACGCTGTCATT
Shewanella woodyi ATCC 51908	Swoo_1100	-306	6.4	GATGACAGCGTTGTCATC

Position: -34 Score: 6.2 Sequence: CATGACAGCGTTGTCATT Locus tag: Swoo_1305
	Swoo_1305	-34	6.2	CATGACAGCGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp_nag
Ortholog function: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Shewanella sp ANA-3	Shewana3_3121	-74	6.2	CATGACAGCGTTGTCATT
Shewanella sp MR-4	Shewmr4_2942	-74	6.2	CATGACAGCGTTGTCATT
Shewanella denitrificans OS217	Sden_2708	-76	6.2	CATGACAGCGTTGTCATT
Shewanella amazonensis SB2B	Sama_0938	-75	6.2	CATGACAGCGTTGTCATT
Shewanella woodyi ATCC 51908	Swoo_1305	-34	6.2	CATGACAGCGTTGTCATT

Position: -247 Score: 6.4 Sequence: GATGACAACGCTGTCATT Position: -92 Score: 5.7 Sequence: TATGACAACGCTGTCAAT Locus tag: Swoo_1308
	Swoo_1308	-247	6.4	GATGACAACGCTGTCATT
		-92	5.7	TATGACAACGCTGTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: duf81
Ortholog function: protein of unknown function DUF81
Shewanella sp ANA-3	Shewana3_3118	-66	5.2	TGTGACAACGCTGTCTTT
Shewanella sp MR-4	Shewmr4_2939	-68	5	TGTGACAACGCTGTCCTT
Shewanella sp MR-7	Shewmr7_3021	-68	5.2	TGTGACAACGCTGTCTTT
Shewanella baltica OS155	Sbal_1080	-210	6.4	GATGACAGCGTTGTCATT
		-64	5.4	TGTGACAACGTTGTCTTT
Shewanella piezotolerans WP3	swp_3708	-129	5.4	AATGACAACGCTGTCTAA
Shewanella woodyi ATCC 51908	Swoo_1308	-92	5.7	TATGACAACGCTGTCAAT

Position: -311 Score: 6.4 Sequence: AATGACAGCGTTGTCATC Locus tag: Swoo_1309
	Swoo_1309	-311	6.4	AATGACAGCGTTGTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pilM
Ortholog function: homolog of type IV pilus assembly protein PilM
Shewanella sp ANA-3	Shewana3_3117	-294	6.4	AATGACAACGCTGTCATC
Shewanella sp MR-4	Shewmr4_2938	-294	6.4	AATGACAACGCTGTCATC
Shewanella sp MR-7	Shewmr7_3020	-294	6.4	AATGACAACGCTGTCATC
Shewanella baltica OS155	Sbal_1081	-304	6.4	AATGACAACGCTGTCATC
Shewanella amazonensis SB2B	Sama_0941	-282	6.4	AATGACAGCGTTGTCATT
Shewanella piezotolerans WP3	swp_3707	-277	5.9	TATGACAGCGTTGTCATC
Shewanella woodyi ATCC 51908	Swoo_1309	-311	6.4	AATGACAGCGTTGTCATC

Position: -108 Score: 6.4 Sequence: AATGACAACGCTGTCATT Locus tag: Swoo_1312
	Swoo_1312	-108	6.4	AATGACAACGCTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagK
Ortholog function: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Shewanella oneidensis MR-1	SO_3507	-115	6.4	AATGACAACGCTGTCATT
Shewanella putrefaciens CN-32	Sputcn32_1076	-90	6.4	AATGACAACGCTGTCATC
Shewanella sp W3-18-1	Sputw3181_3089	-90	6.4	AATGACAACGCTGTCATC
Shewanella sp ANA-3	Shewana3_3114	-114	6.4	AATGACAACGCTGTCATT
Shewanella sp MR-4	Shewmr4_2935	-114	6.4	AATGACAACGCTGTCATT
Shewanella sp MR-7	Shewmr7_3017	-114	6.4	AATGACAACGCTGTCATT
Shewanella baltica OS155	Sbal_1084	-113	6.4	AATGACAACGCTGTCATT
Shewanella denitrificans OS217	Sden_2706	-101	6.4	AATGACAACGCTGTCATT
Shewanella amazonensis SB2B	Sama_0944	-105	6.4	AATGACAACGCTGTCATT
Shewanella loihica PV-4	Shew_1116	-106	6.4	AATGACAGCGTTGTCATT
Shewanella pealeana ATCC 700345	Spea_1101	-123	6.4	AATGACAACGCTGTCATT
Shewanella halifaxensis HAW-EB4	Shal_1149	-124	6.4	AATGACAACGCTGTCATT
Shewanella piezotolerans WP3	swp_3703	-106	6.4	AATGACAACGCTGTCATT
Shewanella sediminis HAW-EB3	Ssed_1212	-106	6.4	AATGACAACGCTGTCATT
Shewanella woodyi ATCC 51908	Swoo_1312	-108	6.4	AATGACAACGCTGTCATT

Position: -172 Score: 6.1 Sequence: AATGACAGCGTTGTCTTT Locus tag: Swoo_1315
	Swoo_1315	-172	6.1	AATGACAGCGTTGTCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagP
Ortholog function: N-acetylglucosamine transporter, NagP
Shewanella oneidensis MR-1	SO_3503	-175	6.1	AATGACAGCGTTGTCTTT
Shewanella putrefaciens CN-32	Sputcn32_1080	-179	6.1	AATGACAGCGTTGTCTTT
Shewanella sp W3-18-1	Sputw3181_3084	-179	6.1	AATGACAGCGTTGTCTTT
Shewanella sp ANA-3	Shewana3_3110	-177	6.1	AATGACAGCGTTGTCTTT
Shewanella sp MR-4	Shewmr4_2931	-178	6.1	AATGACAGCGTTGTCTTT
Shewanella sp MR-7	Shewmr7_3013	-178	6.1	AATGACAGCGTTGTCTTT
Shewanella baltica OS155	Sbal_1088	-179	6.1	AATGACAGCGTTGTCTTT
Shewanella denitrificans OS217	Sden_2702	-138	5.6	AATGACAGCGTTGTCTTA
Shewanella amazonensis SB2B	Sama_0948	-167	6.1	AATGACAGCGTTGTCTTT
Shewanella loihica PV-4	Shew_1119	-186	6.1	AATGACAGCGTTGTCTTT
Shewanella pealeana ATCC 700345	Spea_1104	-198	6.1	AATGACAGCGTTGTCTTT
Shewanella halifaxensis HAW-EB4	Shal_1152	-199	6.1	AATGACAGCGTTGTCTTT
Shewanella piezotolerans WP3	swp_3698	-177	6.1	AATGACAGCGTTGTCTTT
Shewanella sediminis HAW-EB3	Ssed_1215	-168	6.1	AATGACAGCGTTGTCTTT
Shewanella woodyi ATCC 51908	Swoo_1315	-172	6.1	AATGACAGCGTTGTCTTT

Position: -311 Score: 5.9 Sequence: ATTGACAGCGTTATCATT Locus tag: Swoo_3879
	Swoo_3879	-311	5.9	ATTGACAGCGTTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cbp
Ortholog function: Chitn and N-acetylglucosamine-binding protein A
Shewanella oneidensis MR-1	SO_1072	-304	5.6	TTTGACAACGTTGTCTTT
Shewanella sp MR-4	Shewmr4_3027	-300	5.4	TTTGACAACGCTGTCTTT
Shewanella sp MR-7	Shewmr7_0947	-300	5.2	TTTGACAGCGCTGTCTTT
Shewanella baltica OS155	Sbal_0896	-309	5.4	TTTGACAGCGTTGTCTTT
Shewanella denitrificans OS217	Sden_1030	-183	5.2	TTTGACAGCGCTGTCTTT
Shewanella woodyi ATCC 51908	Swoo_3879	-311	5.9	ATTGACAGCGTTATCATT

Position: -36 Score: 5.9 Sequence: TATGACAGCGTTGTCATT Locus tag: Swoo_3939
	Swoo_3939	-36	5.9	TATGACAGCGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp_nag2
Ortholog function: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Shewanella woodyi ATCC 51908	Swoo_3939	-36	5.9	TATGACAGCGTTGTCATT

Position: -99 Score: 5.6 Sequence: AATGACAGCGTTGTCTTA Locus tag: Swoo_4312
	Swoo_4312	-99	5.6	AATGACAGCGTTGTCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdaA
Ortholog function: Peptidoglycan N-acetylglucosamine deacetylase
Shewanella woodyi ATCC 51908	Swoo_4312	-99	5.6	AATGACAGCGTTGTCTTA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NagR regulog to Shewanella woodyi ATCC 51908

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --