Propagation of MalR regulog to Shewanella woodyi ATCC 51908
| Source regulog: | MalR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Maltodextrin utilization |
| Effector: | Maltose |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella woodyi ATCC 51908 |
| Orthologous TF(s) | Swoo_2196 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -282
Score: 5.9 Sequence: CATGAATACGTATGCAAG
Locus tag: Swoo_2202
|
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| Swoo_2202 | -282 | 5.9 | CATGAATACGTATGCAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malT | ||||
| Ortholog function: Predicted maltose transporter MalT | ||||
| Shewanella oneidensis MR-1 | SO_2458 | -393 | 5.6 | gaTGaATACGTATGtAAg |
| Shewanella sp ANA-3 | Shewana3_1925 | -377 | 5.6 | GATGAATACGTATGTAAG |
| Shewanella baltica OS155 | Sbal_2347 | -518 | 5.6 | gaTGaATACGTATGtAAg |
| Shewanella denitrificans OS217 | Sden_2003 | -294 | 5.6 | GATGAATACGTATGTAGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1776 | -353 | 5.6 | CATGAATACGTATGTAGT |
| Shewanella amazonensis SB2B | Sama_1657 | -268 | 5.6 | GATGAATACGTATGTAAG |
| Shewanella piezotolerans WP3 | swp_2681 | -469 | 5.5 | caTGaATACGTATGtAtt |
| Shewanella woodyi ATCC 51908 | Swoo_2202 | -282 | 5.9 | CATGAATACGTATGCAAG |
|
Position: -345
Score: 6.2 Sequence: TCTGCATACGTATGCATA
Position: -194
Score: 6.1 Sequence: TTTGAATACGTATGCATA
Locus tag: Swoo_2209
|
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| Swoo_2209 | -345 | 6.2 | TCTGCATACGTATGCATA | |
| -194 | 6.1 | TTTGAATACGTATGCATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp(Mal) | ||||
| Ortholog function: Predicted maltose-specific TonB-dependent receptor | ||||
| Shewanella denitrificans OS217 | Sden_2029 | -354 | 6.2 | ACTGCATACGTATGCAAA |
| -205 | 6.1 | ATTGAATACGTATGCATA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1787 | -375 | 6.2 | CCTGCATACGTATGCAAA |
| -226 | 6 | GTTGAATACGTATGCATA | ||
| Shewanella woodyi ATCC 51908 | Swoo_2209 | -345 | 6.2 | TCTGCATACGTATGCATA |
| -194 | 6.1 | TTTGAATACGTATGCATA | ||
|
Position: -198
Score: 6.1 Sequence: TATGCATACGTATTCAAA
Position: -47
Score: 6.2 Sequence: TATGCATACGTATGCAGA
Locus tag: Swoo_2210
|
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| Swoo_2210 | -198 | 6.1 | TATGCATACGTATTCAAA | |
| -47 | 6.2 | TATGCATACGTATGCAGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malZ | ||||
| Ortholog function: Maltodextrin glucosidase (EC 3.2.1.20) | ||||
| Shewanella sp ANA-3 | Shewana3_2311 | -312 | 6.1 | TGTGCATACGTATTCAAT |
| -163 | 6.2 | TTTGCATACGTATGCAGG | ||
| Shewanella sp MR-4 | Shewmr4_2133 | -312 | 6.1 | TGTGCATACGTATTCAAT |
| -163 | 6.2 | TTTGCATACGTATGCAGG | ||
| Shewanella sp MR-7 | Shewmr7_2209 | -312 | 6.1 | TGTGCATACGTATTCAAT |
| -163 | 6.2 | TTTGCATACGTATGCAGG | ||
| Shewanella baltica OS155 | Sbal_2287 | -312 | 6 | AGTGCATACGTATTCAAT |
| -163 | 6.2 | TCTGCATACGTATGCAGG | ||
| Shewanella denitrificans OS217 | Sden_2028 | -292 | 6.1 | TATGCATACGTATTCAAT |
| -143 | 6.2 | TTTGCATACGTATGCAGT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1788 | -296 | 6 | TATGCATACGTATTCAAC |
| -147 | 6.2 | TTTGCATACGTATGCAGG | ||
| Shewanella amazonensis SB2B | Sama_1662 | -317 | 6.1 | AGTGCATACGTATTCAAA |
| -167 | 6.1 | TGTGCATACGTATGCAGC | ||
| Shewanella loihica PV-4 | Shew_1889 | -311 | 6.1 | TATGCATACGTATTCAAA |
| -160 | 6.2 | TTTGCATACGTATGCAGT | ||
| Shewanella piezotolerans WP3 | swp_2670 | -303 | 6.1 | TATGCATACGTATTCAAT |
| -154 | 5.9 | ATTACATACGTATGCAGA | ||
| Shewanella woodyi ATCC 51908 | Swoo_2210 | -198 | 6.1 | TATGCATACGTATTCAAA |
| -47 | 6.2 | TATGCATACGTATGCAGA | ||
|
Position: -178
Score: 6.1 Sequence: AATGAATACGTATGCAAA
Locus tag: Swoo_3416
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| Swoo_3416 | -178 | 6.1 | AATGAATACGTATGCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amyA2 | ||||
| Ortholog function: alpha amylase catalytic region | ||||
| Shewanella woodyi ATCC 51908 | Swoo_3416 | -178 | 6.1 | AATGAATACGTATGCAAA |