Propagation of TyrR regulog to Shewanella amazonensis SB2B
| Source regulog: | TyrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella amazonensis SB2B |
| Orthologous TF(s) | Sama_2220 |
| Regulated genes | 22 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -140
Score: 4.6 Sequence: GTGTAACTCATATGTTACAC
Locus tag: Sama_1201
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| Sama_1201 | -140 | 4.6 | GTGTAACTCATATGTTACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pep2 | ||||
| Ortholog function: peptidase M4 thermolysin | ||||
| Shewanella amazonensis SB2B | Sama_1201 | -140 | 4.6 | GTGTAACTCATATGTTACAC |
|
Position: -123
Score: 4.2 Sequence: CTGTAAGCTAAGCCTGACAC
Locus tag: Sama_1363
|
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| Sama_1363 | -123 | 4.2 | CTGTAAGCTAAGCCTGACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: liuR | ||||
| Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family | ||||
| Shewanella oneidensis MR-1 | SO_1898 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1720 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella sp W3-18-1 | Sputw3181_2305 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella sp ANA-3 | Shewana3_1673 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella sp MR-4 | Shewmr4_2321 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella sp MR-7 | Shewmr7_2393 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella baltica OS155 | Sbal_2827 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella denitrificans OS217 | Sden_2244 | -117 | 4.2 | GTGGAAACAGAATTTAACAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2726 | -117 | 4.7 | GTGGCAAGCAAAATTAACAC |
| Shewanella amazonensis SB2B | Sama_1363 | -123 | 4.2 | CTGTAAGCTAAGCCTGACAC |
| Shewanella pealeana ATCC 700345 | Spea_2796 | -111 | 4.4 | GTGGCAAGCGCAATTGACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2901 | -110 | 4.4 | GTGGCAAGCGCGATTGACAT |
| Shewanella piezotolerans WP3 | swp_3441 | -76 | 4.2 | TTGGCACGCACAATTGACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3222 | -129 | 4.5 | CTGGAAAACTTACTTGCCAT |
|
Position: -195
Score: 3.8 Sequence: GTGTCAATCTCAGTTCCCGC
Position: -173
Score: 4.6 Sequence: CTGTAAATCCAGAGTGACAA
Locus tag: Sama_1375
|
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| Sama_1375 | -195 | 3.8 | GTGTCAATCTCAGTTCCCGC | |
| -173 | 4.6 | CTGTAAATCCAGAGTGACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ivdA | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) | ||||
| Shewanella oneidensis MR-1 | SO_1677 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1397 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp W3-18-1 | Sputw3181_2704 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp ANA-3 | Shewana3_2771 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-4 | Shewmr4_2597 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-7 | Shewmr7_2664 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella baltica OS155 | Sbal_1495 | -162 | 4.3 | CTGTAAATCCTTACTGACAT |
| Shewanella denitrificans OS217 | Sden_1943 | -159 | 4.4 | GTGTAAATCTTCAGTGACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1338 | -140 | 4.1 | CTGTAAATCTTCACTGACAA |
| Shewanella amazonensis SB2B | Sama_1375 | -195 | 3.8 | GTGTCAATCTCAGTTCCCGC |
| -173 | 4.6 | CTGTAAATCCAGAGTGACAA | ||
| Shewanella loihica PV-4 | Shew_1667 | -168 | 4.4 | CTGTAAATTCAGCCTGACAA |
| Shewanella pealeana ATCC 700345 | Spea_2783 | -231 | 4.5 | GTGTAAATTCTATGTGACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2878 | -231 | 4.4 | GTGTAAATCCTTTGTGACAT |
| Shewanella piezotolerans WP3 | swp_3387 | -75 | 3.8 | TTTTAAGTTGATGTTTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_1473 | -185 | 4.5 | CTGTAAATCCTGAGTGACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3202 | -173 | 4.7 | CTGTAAATCTTGAGTGACAT |
|
Position: -150
Score: 4.3 Sequence: CTGTAAAGCAATTAATACAT
Locus tag: Sama_1709
|
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| Sama_1709 | -150 | 4.3 | CTGTAAAGCAATTAATACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bkdA1 | ||||
| Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) | ||||
| Shewanella oneidensis MR-1 | SO_2339 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1885 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella sp W3-18-1 | Sputw3181_2123 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella sp ANA-3 | Shewana3_2131 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella sp MR-4 | Shewmr4_2028 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella sp MR-7 | Shewmr7_1947 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella baltica OS155 | Sbal_4508 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella denitrificans OS217 | Sden_1786 | -153 | 4.5 | GCGTAAAGCAAATTATACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1935 | -156 | 4.5 | TCGTAAAGCAATATATACAT |
| Shewanella amazonensis SB2B | Sama_1709 | -150 | 4.3 | CTGTAAAGCAATTAATACAT |
| Shewanella loihica PV-4 | Shew_1925 | -175 | 4.7 | TTGTAAAGCTAGCGATACAT |
| Shewanella pealeana ATCC 700345 | Spea_2246 | -161 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2234 | -161 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella piezotolerans WP3 | swp_2606 | -162 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella sediminis HAW-EB3 | Ssed_2329 | -172 | 4.4 | TTGTAAAGCTAAAGATACGC |
| Shewanella woodyi ATCC 51908 | Swoo_2278 | -171 | 4 | ATGTAAAGCTAAACATACGG |
|
Position: -224
Score: 3.8 Sequence: ATTGCAAGATTTGTTGCCAT
Locus tag: Sama_1733
|
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| Sama_1733 | -224 | 3.8 | ATTGCAAGATTTGTTGCCAT | |
| Supported by regulated orthologs from reference regulons | ||||