Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SoxR regulog to Shewanella amazonensis SB2B

Reference regulog properties
Source regulog: SoxR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Superoxide stress response
Effector: Paraquat
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella amazonensis SB2B
Orthologous TF(s) Sama_3347
Regulated genes 2
Built upon 12 sites [see more]
Predicted regulatory interactions in Shewanella amazonensis SB2B
Locus tag Position Score Sequence
Position: -32
Score: 6.2
Sequence: ACTTCAAGTCAACTTGAGGT
Locus tag: Sama_3347
Sama_3347 -32 6.2 ACTTCAAGTCAACTTGAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxR
Ortholog function: Redox-sensitive transcriptional activator, MerR family
Shewanella amazonensis SB2B Sama_3347 -32 6.2 ACTTCAAGTCAACTTGAGGT
Shewanella loihica PV-4 Shew_0423 -32 5.7 ACTTCAAGTCGACTTGAGGT
Shewanella woodyi ATCC 51908 Swoo_3439 -113 4.4 AgtTaAAGTcgACTTtAaGT
Position: -62
Score: 6.2
Sequence: ACCTCAAGTTGACTTGAAGT
Locus tag: Sama_3348
Sama_3348 -62 6.2 ACCTCAAGTTGACTTGAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF11158
Ortholog function: Protein of unknown function DUF2938
Shewanella amazonensis SB2B Sama_3348 -62 6.2 ACCTCAAGTTGACTTGAAGT
© 2009-2020 RegPrecise