Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AgaR regulog to Shewanella amazonensis SB2B

Reference regulog properties
Source regulog: AgaR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: N-acetylgalactosamine utilization
Effector: N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella amazonensis SB2B
Orthologous TF(s) Sama_1193
Regulated genes 2
Built upon 8 sites [see more]
Predicted regulatory interactions in Shewanella amazonensis SB2B
Locus tag Position Score Sequence
Position: -151
Score: 4.6
Locus tag: Sama_1192
Sama_1192 -151 4.6 GAAAGAAAATAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp_aga
Ortholog function: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
Shewanella sp ANA-3 Shewana3_2703 -157 6.1 GAAACTTTTTGAAAG
Shewanella sp MR-4 Shewmr4_2537 -157 6.1 GAAACTTTTTGAAAG
Shewanella sp MR-7 Shewmr7_2604 -157 6.1 GAAACTTTTTGAAAG
Shewanella amazonensis SB2B Sama_1192 -151 4.6 GAAAGAAAATAAAAG
Position: -67
Score: 5.6
Locus tag: Sama_1193
Sama_1193 -67 5.6 GAAACCTATTGAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: agaR
Ortholog function: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
Shewanella sp ANA-3 Shewana3_2702 -71 5.7 GAAAGTGTTTGAAGG
Shewanella sp MR-4 Shewmr4_2536 -71 6 GAAAGTGTTTGAAAG
Shewanella sp MR-7 Shewmr7_2603 -71 6 GAAAGTGTTTGAAAG
Shewanella amazonensis SB2B Sama_1193 -67 5.6 GAAACCTATTGAAAG