Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Marinobacter sp. ELB17

Reference regulog properties
Source regulog: LexA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Marinobacter sp. ELB17
Orthologous TF(s) MELB17_18189
Regulated genes 6
Built upon 192 sites [see more]
Predicted regulatory interactions in Marinobacter sp. ELB17
Locus tag Position Score Sequence
Position: -46
Score: 5.6
Sequence: CACTGTATGAAAAAACAGTA
Locus tag: MELB17_03505
MELB17_03505 -46 5.6 CACTGTATGAAAAAACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella putrefaciens CN-32 Sputcn32_2771 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp W3-18-1 Sputw3181_1241 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp ANA-3 Shewana3_1104 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp MR-4 Shewmr4_1104 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp MR-7 Shewmr7_1170 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella baltica OS155 Sbal_3153 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella denitrificans OS217 Sden_1151 -71 5.4 TACTGTATAAAAAACCAGTG
-49 5.6 TACTGTTTATCAATACAGTG
Shewanella frigidimarina NCIMB 400 Sfri_1043 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella amazonensis SB2B Sama_1026 -73 5.4 TACTGTACAAAAAATCAGTA
-51 5.3 TACTGTGTATCAATACAGTA
Shewanella loihica PV-4 Shew_1196 -62 5.7 TACTGTATAAAAATTCAGTA
-40 4.9 TACTGTGCATGAATACAGTA
Shewanella pealeana ATCC 700345 Spea_1169 -62 5.9 TACTGTATGAATAAACAGTA
-40 5.3 TACTGTTTAACCATACAGTG
Shewanella halifaxensis HAW-EB4 Shal_1212 -62 5.8 TACTGTATAGATAAACAGTA
-40 5.5 TACTGTTTAACTATACAGTG
Shewanella piezotolerans WP3 swp_1346 -61 5.7 TACTGTATAGAAAAACAGTA
-39 5.6 TACTGTTTATCAATACAGTG
Shewanella sediminis HAW-EB3 Ssed_1281 -62 5.8 TACTGTATATAAAATCAGTA
-40 5.5 TACTGTTTAAAAACACAGTA
Shewanella woodyi ATCC 51908 Swoo_3359 -64 5.9 TACTGTATTTATGAACAGTA
-42 5.9 TACTGTTCATAAATACAGTA
Position: -47
Score: 5.2
Sequence: CACTGTATAAACAAACAGGG
Locus tag: MELB17_18189
MELB17_18189 -47 5.2 CACTGTATAAACAAACAGGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Shewanella oneidensis MR-1 SO_4603 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella putrefaciens CN-32 Sputcn32_3780 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp W3-18-1 Sputw3181_0135 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp ANA-3 Shewana3_3989 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-4 Shewmr4_3789 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-7 Shewmr7_3862 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella baltica OS155 Sbal_0156 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella denitrificans OS217 Sden_3515 -45 5.1 TACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella frigidimarina NCIMB 400 Sfri_0260 -45 5 CACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella amazonensis SB2B Sama_3481 -45 5.6 TACTGTATATACTGACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella loihica PV-4 Shew_0127 -45 4.9 TACTGTATATACTGACAGGT
-26 4.8 TACTGTATGGAAAGACAGGA
Shewanella pealeana ATCC 700345 Spea_3997 -45 5.2 TACTGTATATACTAACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella halifaxensis HAW-EB4 Shal_0260 -45 4.9 TACTGTATATACTGACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella piezotolerans WP3 swp_4821 -45 5.2 TACTGTATATACTAACAGGT
-26 5 TACTGTATAGAAAAACAGGT
Shewanella sediminis HAW-EB3 Ssed_0200 -45 5.6 TACTGTATATACTAACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Shewanella woodyi ATCC 51908 Swoo_0180 -45 5.3 TACTGTATATACTGACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Position: -120
Score: 5.8
Sequence: AACTGTATATATAAACAGTG
Locus tag: MELB17_11410
MELB17_11410 -120 5.8 AACTGTATATATAAACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yebG
Ortholog function: SOS regulon DNA damage-inducible protein
Shewanella oneidensis MR-1 SO_2604 -31 6 TACTGTATATAAAAACAGTG
Shewanella putrefaciens CN-32 Sputcn32_2205 -30 6 TACTGTATATAAAAACAGTG
Shewanella sp W3-18-1 Sputw3181_1804 -30 6 TACTGTATATAAAAACAGTG
Shewanella sp ANA-3 Shewana3_1775 -31 6 TACTGTATATAAAAACAGTG
Shewanella sp MR-4 Shewmr4_1670 -31 6 TACTGTATATAAAAACAGTG
Shewanella sp MR-7 Shewmr7_1745 -31 6 TACTGTATATAAAAACAGTG
Shewanella baltica OS155 Sbal_2450 -31 6 TACTGTATATAAAAACAGTG
Shewanella denitrificans OS217 Sden_1719 -31 6 CACTGTATATAAAAACAGTA
Shewanella frigidimarina NCIMB 400 Sfri_2231 -31 5.9 CACTGTATATAAAAACAGTG
Shewanella amazonensis SB2B Sama_1582 -31 5.8 CACTGTATAAATAAACAGTG
Shewanella loihica PV-4 Shew_1799 -31 5.7 AACTGTATATAAAAACAGTG
Shewanella pealeana ATCC 700345 Spea_1932 -31 5.9 CACTGTATATAAAAACAGTG
Shewanella halifaxensis HAW-EB4 Shal_2367 -31 6 TACTGTATATAAAAACAGTG
Shewanella piezotolerans WP3 swp_2821 11 6 TACTGTATATAAAAACAGTG
Shewanella sediminis HAW-EB3 Ssed_2486 -31 5.9 AACTGTATATAAAAACAGTA
Shewanella woodyi ATCC 51908 Swoo_2130 -31 5.9 AACTGTATATAAAAACAGTA
Position: -35
Score: 6.2
Sequence: TACTGTATATATAAACAGTA
Locus tag: MELB17_15581
MELB17_15581 -35 6.2 TACTGTATATATAAACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: imuA
Ortholog function: Predicted RecA/RadA recombinase
Shewanella amazonensis SB2B Sama_1865 -66 5.9 TACTGTATAAATATACAGTT
Shewanella loihica PV-4 Shew_2102 -145 6.1 TACTGTATTTATATACAGTG
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