Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LiuR regulog to Marinobacter aqueolei

Reference regulog properties
Source regulog: LiuR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Marinobacter aqueolei
Orthologous TF(s) Maqu_2120
Regulated genes 3
Built upon 134 sites [see more]
Predicted regulatory interactions in Marinobacter aqueolei
Locus tag Position Score Sequence
Position: -130
Score: 6.2
Sequence: GTTTACGTTAAGGTAAAG
Locus tag: Maqu_1382
Maqu_1382 -130 6.2 GTTTACGTTAAGGTAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: bkdA1
Ortholog function: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
Shewanella oneidensis MR-1 SO_2339 -90 6.2 GTTTACGTTAACGTAATG
Shewanella putrefaciens CN-32 Sputcn32_1885 -90 6.2 GTTTACGTTAACGTAATG
Shewanella sp W3-18-1 Sputw3181_2123 -90 6.2 GTTTACGTTAACGTAATG
Shewanella sp ANA-3 Shewana3_2131 -90 6.2 GTTTACGTTAACGTAATG
Shewanella sp MR-4 Shewmr4_2028 -90 6.2 GTTTACGTTAACGTAATG
Shewanella sp MR-7 Shewmr7_1947 -90 6.2 GTTTACGTTAACGTAATG
Shewanella baltica OS155 Sbal_2222 -90 6.2 GTTTACGTTAACGTAATG
Shewanella denitrificans OS217 Sden_1786 -83 6.2 GTTTACGTTAACGTAATG
Shewanella frigidimarina NCIMB 400 Sfri_1935 -86 6.2 GTTTACGTTAACGTAATG
Shewanella amazonensis SB2B Sama_1709 -81 6.2 GTTTACGTTAACGTAATG
Shewanella loihica PV-4 Shew_1925 -105 5.7 GTTTACGTTAACGTAACT
Shewanella pealeana ATCC 700345 Spea_2246 -91 6.2 GTTTACGTTAACGTAATG
Shewanella halifaxensis HAW-EB4 Shal_2234 -92 6.2 GTTTACGTTAACGTAATG
Shewanella piezotolerans WP3 swp_2606 -92 6.2 GTTTACGTTAACGTAATG
Shewanella sediminis HAW-EB3 Ssed_2329 -103 6.2 GTTTACGTTAACGTAATG
Shewanella woodyi ATCC 51908 Swoo_2278 -101 6.2 GTTTACGTTAACGTAATG
Position: -52
Score: 6.3
Sequence: CTTTACGTTTACGTAAAC
Locus tag: Maqu_2120
Maqu_2120 -52 6.3 CTTTACGTTTACGTAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: branched chain amino acid metabolism regulator, MerR family
Shewanella oneidensis MR-1 SO_1898 -59 6 CTTTACCTTTACGTAAAC
Shewanella putrefaciens CN-32 Sputcn32_1720 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp W3-18-1 Sputw3181_2305 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp ANA-3 Shewana3_1673 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp MR-4 Shewmr4_2321 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp MR-7 Shewmr7_2393 -59 6 CTTTACCTTTACGTAAAC
Shewanella baltica OS155 Sbal_2827 -59 6 CTTTACCTTTACGTAAAC
Shewanella denitrificans OS217 Sden_2244 -58 6 CTTTACCTTTACGTAAAC
Shewanella frigidimarina NCIMB 400 Sfri_2726 -59 6 CTTTACCTTTACGTAAAC
Shewanella amazonensis SB2B Sama_1363 -65 6 CTTTACCTTTACGTAAAC
Shewanella loihica PV-4 Shew_2569 -63 6 CTTTACCTTTACGTAAAC
Shewanella pealeana ATCC 700345 Spea_2796 -63 6 CTTTACCTTTACGTAAAC
Shewanella halifaxensis HAW-EB4 Shal_2901 -62 6 CTTTACCTTTACGTAAAC
Shewanella piezotolerans WP3 swp_3441 -28 6 CTTTACCTTTACGTAAAC
Shewanella sediminis HAW-EB3 Ssed_1459 -60 6 CTTTACCTTTACGTAAAC
Shewanella woodyi ATCC 51908 Swoo_3222 -61 6 CTTTACCTTTACGTAAAC
Position: -172
Score: 5.8
Sequence: GTTGACGTTCACGTAAAC
Locus tag: Maqu_2878
Maqu_2878 -172 5.8 GTTGACGTTCACGTAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: leucine dehydrogenase
Shewanella oneidensis MR-1 SO_2638 -171 6 CCTTACGTTTACGTAAAG
Shewanella putrefaciens CN-32 Sputcn32_2238 -172 6 GCTTACGTTTACGTAAAG
Shewanella sp W3-18-1 Sputw3181_1771 -172 6 GCTTACGTTTACGTAAAG
Shewanella sp ANA-3 Shewana3_1742 -171 6 CCTTACGTTTACGTAAAG
Shewanella sp MR-4 Shewmr4_1598 -171 6 CCTTACGTTTACGTAAAG
Shewanella sp MR-7 Shewmr7_1673 -171 6 CCTTACGTTTACGTAAAG
Shewanella baltica OS155 Sbal_2483 -151 6 GCTTACGTTTACGTAAAG
Shewanella denitrificans OS217 Sden_1823 -157 6.4 CTTTACGTTTACGTAAAG
Shewanella frigidimarina NCIMB 400 Sfri_2265 -195 6.4 CTTTACGTTTACGTAAAG
Shewanella amazonensis SB2B Sama_2067 -164 6 CTTTACGTTGACGTAAAG
Shewanella loihica PV-4 Shew_1555 -174 6.5 CTTTACGTTAACGTAAAG
Shewanella pealeana ATCC 700345 Spea_2543 -174 6.5 CTTTACGTTAACGTAAAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -174 6.5 CTTTACGTTAACGTAAAG
Shewanella piezotolerans WP3 swp_1857 -175 6.5 CTTTACGTTAACGTAAAG
Shewanella sediminis HAW-EB3 Ssed_1877 -173 6.5 CTTTACGTTAACGTAAAG
Shewanella woodyi ATCC 51908 Swoo_2710 -174 5.8 ATTGACGTTAACGTAAAG
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